Wall clock time and date at job start Mon Mar 30 2020 03:39:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47325 * 2 1 4 4 C 1.53004 * 109.47028 * 119.99878 * 2 1 3 5 5 N 1.46902 * 109.47166 * 174.99971 * 4 2 1 6 6 C 1.46899 * 110.99916 * 169.55699 * 5 4 2 7 7 C 1.50693 * 109.47037 * 196.63985 * 6 5 4 8 8 H 1.07999 * 120.00155 * 356.01335 * 7 6 5 9 9 C 1.37872 * 120.00346 * 176.01087 * 7 6 5 10 10 N 1.31514 * 119.99776 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 120.00296 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.47132 * 60.00539 * 11 9 7 13 13 H 1.48508 * 109.47150 * 180.02562 * 11 9 7 14 14 H 1.48497 * 109.47391 * 300.00175 * 11 9 7 15 15 C 1.46903 * 110.99729 * 293.51269 * 5 4 2 16 16 H 1.09000 * 110.74951 * 207.13393 * 15 5 4 17 17 C 1.55304 * 110.84875 * 330.82321 * 15 5 4 18 18 C 1.54947 * 100.94346 * 152.32626 * 17 15 5 19 19 O 1.43646 * 105.13624 * 323.55640 * 18 17 15 20 20 C 1.43245 * 109.96849 * 24.42836 * 19 18 17 21 21 H 1.08994 * 109.46955 * 300.00364 * 1 2 3 22 22 H 1.08998 * 109.46653 * 60.00244 * 1 2 3 23 23 H 1.09000 * 109.47217 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47017 * 239.99519 * 2 1 3 25 25 H 1.08994 * 109.46914 * 59.99701 * 3 2 1 26 26 H 1.08999 * 109.47203 * 180.02562 * 3 2 1 27 27 H 1.09007 * 109.46562 * 299.99867 * 3 2 1 28 28 H 1.08998 * 109.46992 * 295.00077 * 4 2 1 29 29 H 1.09006 * 109.46858 * 55.00155 * 4 2 1 30 30 H 1.08998 * 109.47093 * 316.64303 * 6 5 4 31 31 H 1.09003 * 109.46852 * 76.64369 * 6 5 4 32 32 H 0.96997 * 120.00331 * 179.97438 * 10 9 7 33 33 H 1.09006 * 111.12814 * 270.24637 * 17 15 5 34 34 H 1.08998 * 111.12463 * 34.40843 * 17 15 5 35 35 H 1.09001 * 110.31190 * 204.64271 * 18 17 15 36 36 H 1.09007 * 110.30785 * 82.46980 * 18 17 15 37 37 H 1.08999 * 109.82597 * 238.77369 * 20 19 18 38 38 H 1.08996 * 109.83053 * 117.80017 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5040 -0.8267 1.1905 6 6 4.0507 -1.2865 2.4741 7 6 5.5291 -0.9988 2.5224 8 1 6.0265 -0.5813 1.6594 9 6 6.2469 -1.2686 3.6682 10 7 5.6414 -1.7774 4.7189 11 14 8.0797 -0.9127 3.7278 12 1 8.3107 0.5353 3.4924 13 1 8.6141 -1.2893 5.0612 14 1 8.7716 -1.7015 2.6770 15 6 3.9247 -1.7080 0.0931 16 1 4.8892 -2.1656 0.3133 17 6 2.8470 -2.7896 -0.1913 18 6 3.1014 -3.0705 -1.6937 19 8 3.4481 -1.7967 -2.2600 20 6 3.9749 -0.9363 -1.2430 21 1 -0.3633 0.5139 0.8899 22 1 -0.3632 0.5138 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 1.8933 -0.5139 -0.8900 25 1 1.6767 1.9563 0.8899 26 1 3.1300 1.4424 -0.0005 27 1 1.6767 1.9563 -0.8901 28 1 1.7516 -0.1583 2.1370 29 1 1.6053 -1.7198 1.2952 30 1 3.5518 -0.7632 3.2898 31 1 3.8858 -2.3592 2.5759 32 1 6.1464 -1.9676 5.5249 33 1 3.0184 -3.6826 0.4099 34 1 1.8434 -2.3962 -0.0297 35 1 2.1987 -3.4604 -2.1639 36 1 3.9253 -3.7743 -1.8127 37 1 3.3681 -0.0337 -1.1717 38 1 5.0058 -0.6727 -1.4792 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069622571.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:39:00 Heat of formation + Delta-G solvation = -37.251571 kcal Electronic energy + Delta-G solvation = -17109.834130 eV Core-core repulsion = 14566.649574 eV Total energy + Delta-G solvation = -2543.184556 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.85631 -36.64235 -34.20499 -32.44278 -30.29585 -28.64953 -27.21741 -26.77437 -24.40172 -22.03360 -22.00216 -19.97952 -19.30777 -16.49644 -16.36150 -15.78443 -14.71629 -14.59877 -14.33561 -14.00906 -13.78262 -13.40454 -12.72849 -12.42627 -12.23187 -11.93253 -11.81361 -11.55172 -11.21279 -11.08642 -10.97631 -10.85879 -10.66278 -10.40991 -10.34747 -10.21676 -9.88445 -9.74417 -9.25239 -9.01033 -8.45166 -7.27131 -6.04889 -4.06541 3.32083 3.36247 3.39313 4.23007 4.40314 4.71997 5.12503 5.19882 5.28631 5.30497 5.33928 5.38606 5.53577 5.71520 5.79566 5.84662 5.94760 5.99549 6.03800 6.12383 6.17337 6.19334 6.26822 6.34329 6.42059 6.44624 6.66789 6.75816 6.85519 7.16221 7.28413 7.36051 7.79075 8.06291 8.16339 8.50445 9.00747 9.57834 11.05515 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.027562 B = 0.008360 C = 0.007465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.665069 B = 3348.375237 C = 3750.111499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.113 4.113 3 C -0.138 4.138 4 C 0.051 3.949 5 N -0.520 5.520 6 C 0.194 3.806 7 C -0.507 4.507 8 H 0.062 0.938 9 C 0.056 3.944 10 N -0.899 5.899 11 Si 0.897 3.103 12 H -0.276 1.276 13 H -0.288 1.288 14 H -0.277 1.277 15 C 0.065 3.935 16 H 0.099 0.901 17 C -0.202 4.202 18 C 0.056 3.944 19 O -0.392 6.392 20 C 0.038 3.962 21 H 0.051 0.949 22 H 0.051 0.949 23 H 0.048 0.952 24 H 0.086 0.914 25 H 0.049 0.951 26 H 0.071 0.929 27 H 0.040 0.960 28 H 0.067 0.933 29 H 0.034 0.966 30 H 0.033 0.967 31 H -0.010 1.010 32 H 0.262 0.738 33 H 0.077 0.923 34 H 0.093 0.907 35 H 0.076 0.924 36 H 0.055 0.945 37 H 0.094 0.906 38 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.610 0.439 -9.397 12.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.131 4.131 3 C -0.195 4.195 4 C -0.077 4.077 5 N -0.243 5.243 6 C 0.069 3.931 7 C -0.545 4.545 8 H 0.080 0.920 9 C -0.146 4.146 10 N -0.538 5.538 11 Si 0.725 3.275 12 H -0.201 1.201 13 H -0.214 1.214 14 H -0.203 1.203 15 C -0.046 4.046 16 H 0.118 0.882 17 C -0.240 4.240 18 C -0.021 4.021 19 O -0.312 6.312 20 C -0.039 4.039 21 H 0.070 0.930 22 H 0.070 0.930 23 H 0.067 0.933 24 H 0.104 0.896 25 H 0.068 0.932 26 H 0.090 0.910 27 H 0.059 0.941 28 H 0.086 0.914 29 H 0.052 0.948 30 H 0.051 0.949 31 H 0.008 0.992 32 H 0.071 0.929 33 H 0.096 0.904 34 H 0.111 0.889 35 H 0.094 0.906 36 H 0.073 0.927 37 H 0.112 0.888 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -7.394 0.918 -9.483 12.060 hybrid contribution 0.742 -0.796 0.692 1.290 sum -6.651 0.122 -8.791 11.024 Atomic orbital electron populations 1.21813 0.96092 1.01038 1.01286 1.21557 0.94485 0.97494 0.99568 1.21744 1.02579 0.95026 1.00193 1.22323 0.89640 0.98201 0.97524 1.62109 1.07191 1.48851 1.06152 1.19747 0.95374 0.93593 0.84357 1.21116 0.92848 1.41487 0.99091 0.91968 1.24978 0.98656 0.95356 0.95561 1.69942 1.36201 1.44197 1.03502 0.86573 0.85067 0.78848 0.76999 1.20144 1.21375 1.20314 1.23158 0.98720 0.90751 0.91926 0.88244 1.24114 1.02480 1.01071 0.96378 1.23196 0.99331 0.86568 0.93017 1.88343 1.83821 1.24553 1.34440 1.23701 0.99003 0.94447 0.86712 0.92960 0.93029 0.93319 0.89586 0.93204 0.90985 0.94061 0.91447 0.94838 0.94936 0.99229 0.92868 0.90446 0.88888 0.90615 0.92690 0.88802 0.91965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 9.19 37.16 0.34 -1.45 16 2 C -0.11 -1.66 1.79 -90.62 -0.16 -1.83 16 3 C -0.14 -2.03 8.27 37.16 0.31 -1.72 16 4 C 0.05 0.90 3.83 -3.82 -0.01 0.88 16 5 N -0.52 -10.66 3.88 -225.76 -0.88 -11.54 16 6 C 0.19 4.90 4.68 -4.98 -0.02 4.87 16 7 C -0.51 -13.92 8.41 -34.45 -0.29 -14.21 16 8 H 0.06 1.70 7.79 -52.49 -0.41 1.29 16 9 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 10 N -0.90 -26.37 13.29 55.43 0.74 -25.64 16 11 Si 0.90 21.50 29.54 -169.99 -5.02 16.48 16 12 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 13 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 14 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 15 C 0.06 1.21 2.82 -65.77 -0.19 1.03 16 16 H 0.10 2.10 7.19 -51.93 -0.37 1.73 16 17 C -0.20 -3.22 5.55 -24.48 -0.14 -3.36 16 18 C 0.06 0.81 7.78 38.19 0.30 1.11 16 19 O -0.39 -6.56 11.04 -35.23 -0.39 -6.95 16 20 C 0.04 0.65 6.45 37.88 0.24 0.89 16 21 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 22 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 23 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.09 1.34 3.98 -51.93 -0.21 1.13 16 25 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.07 1.19 6.78 -51.93 -0.35 0.83 16 27 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.07 1.23 7.84 -51.93 -0.41 0.82 16 29 H 0.03 0.58 5.64 -51.93 -0.29 0.28 16 30 H 0.03 0.89 7.79 -51.93 -0.40 0.48 16 31 H -0.01 -0.27 8.04 -51.93 -0.42 -0.69 16 32 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 33 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 34 H 0.09 1.44 4.38 -51.93 -0.23 1.21 16 35 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.09 1.57 3.44 -51.93 -0.18 1.39 16 38 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 LS Contribution 287.77 15.07 4.34 4.34 Total: -1.00 -28.55 287.77 -7.14 -35.69 By element: Atomic # 1 Polarization: 6.15 SS G_CDS: -6.21 Total: -0.06 kcal Atomic # 6 Polarization: -12.60 SS G_CDS: 0.28 Total: -12.32 kcal Atomic # 7 Polarization: -37.03 SS G_CDS: -0.14 Total: -37.17 kcal Atomic # 8 Polarization: -6.56 SS G_CDS: -0.39 Total: -6.95 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -28.55 -7.14 -35.69 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069622571.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.559 kcal (2) G-P(sol) polarization free energy of solvation -28.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds