Wall clock time and date at job start Mon Mar 30 2020 03:38:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47325 * 2 1 4 4 C 1.53004 * 109.47028 * 119.99878 * 2 1 3 5 5 N 1.46902 * 109.47166 * 174.99971 * 4 2 1 6 6 C 1.46899 * 110.99916 * 169.55699 * 5 4 2 7 7 C 1.50693 * 109.47037 * 196.63985 * 6 5 4 8 8 H 1.07999 * 120.00155 * 356.01335 * 7 6 5 9 9 C 1.37872 * 120.00346 * 176.01087 * 7 6 5 10 10 N 1.31514 * 119.99776 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 120.00296 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.47132 * 60.00539 * 11 9 7 13 13 H 1.48508 * 109.47150 * 180.02562 * 11 9 7 14 14 H 1.48497 * 109.47391 * 300.00175 * 11 9 7 15 15 C 1.46903 * 110.99729 * 293.51269 * 5 4 2 16 16 H 1.09000 * 110.74951 * 207.13393 * 15 5 4 17 17 C 1.55304 * 110.84875 * 330.82321 * 15 5 4 18 18 C 1.54947 * 100.94346 * 152.32626 * 17 15 5 19 19 O 1.43646 * 105.13624 * 323.55640 * 18 17 15 20 20 C 1.43245 * 109.96849 * 24.42836 * 19 18 17 21 21 H 1.08994 * 109.46955 * 300.00364 * 1 2 3 22 22 H 1.08998 * 109.46653 * 60.00244 * 1 2 3 23 23 H 1.09000 * 109.47217 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47017 * 239.99519 * 2 1 3 25 25 H 1.08994 * 109.46914 * 59.99701 * 3 2 1 26 26 H 1.08999 * 109.47203 * 180.02562 * 3 2 1 27 27 H 1.09007 * 109.46562 * 299.99867 * 3 2 1 28 28 H 1.08998 * 109.46992 * 295.00077 * 4 2 1 29 29 H 1.09006 * 109.46858 * 55.00155 * 4 2 1 30 30 H 1.08998 * 109.47093 * 316.64303 * 6 5 4 31 31 H 1.09003 * 109.46852 * 76.64369 * 6 5 4 32 32 H 0.96997 * 120.00331 * 179.97438 * 10 9 7 33 33 H 1.09006 * 111.12814 * 270.24637 * 17 15 5 34 34 H 1.08998 * 111.12463 * 34.40843 * 17 15 5 35 35 H 1.09001 * 110.31190 * 204.64271 * 18 17 15 36 36 H 1.09007 * 110.30785 * 82.46980 * 18 17 15 37 37 H 1.08999 * 109.82597 * 238.77369 * 20 19 18 38 38 H 1.08996 * 109.83053 * 117.80017 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5040 -0.8267 1.1905 6 6 4.0507 -1.2865 2.4741 7 6 5.5291 -0.9988 2.5224 8 1 6.0265 -0.5813 1.6594 9 6 6.2469 -1.2686 3.6682 10 7 5.6414 -1.7774 4.7189 11 14 8.0797 -0.9127 3.7278 12 1 8.3107 0.5353 3.4924 13 1 8.6141 -1.2893 5.0612 14 1 8.7716 -1.7015 2.6770 15 6 3.9247 -1.7080 0.0931 16 1 4.8892 -2.1656 0.3133 17 6 2.8470 -2.7896 -0.1913 18 6 3.1014 -3.0705 -1.6937 19 8 3.4481 -1.7967 -2.2600 20 6 3.9749 -0.9363 -1.2430 21 1 -0.3633 0.5139 0.8899 22 1 -0.3632 0.5138 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 1.8933 -0.5139 -0.8900 25 1 1.6767 1.9563 0.8899 26 1 3.1300 1.4424 -0.0005 27 1 1.6767 1.9563 -0.8901 28 1 1.7516 -0.1583 2.1370 29 1 1.6053 -1.7198 1.2952 30 1 3.5518 -0.7632 3.2898 31 1 3.8858 -2.3592 2.5759 32 1 6.1464 -1.9676 5.5249 33 1 3.0184 -3.6826 0.4099 34 1 1.8434 -2.3962 -0.0297 35 1 2.1987 -3.4604 -2.1639 36 1 3.9253 -3.7743 -1.8127 37 1 3.3681 -0.0337 -1.1717 38 1 5.0058 -0.6727 -1.4792 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069622571.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:38:59 Heat of formation + Delta-G solvation = -55.469330 kcal Electronic energy + Delta-G solvation = -17110.624111 eV Core-core repulsion = 14566.649574 eV Total energy + Delta-G solvation = -2543.974537 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.26425 -38.04465 -35.77157 -34.36340 -31.77446 -30.06561 -29.02461 -27.87337 -26.06357 -23.85915 -23.30064 -21.37075 -20.72446 -18.42629 -17.87321 -17.25681 -16.61461 -15.91772 -15.71429 -15.46207 -15.23259 -14.75498 -14.31775 -14.06572 -13.75716 -13.32173 -13.13790 -12.92965 -12.81753 -12.74374 -12.55225 -12.26708 -12.24630 -11.95617 -11.81070 -11.67631 -11.50487 -11.18714 -11.12157 -10.60646 -10.32446 -8.95590 -8.20392 -6.30356 1.39979 1.42430 1.50348 2.38997 2.90139 3.11300 3.21187 3.74800 3.93740 4.01299 4.09279 4.18585 4.26031 4.35693 4.43165 4.64931 4.74617 4.77549 4.82921 4.84353 4.91514 4.96566 5.00786 5.06777 5.13610 5.20790 5.23761 5.26777 5.32599 5.54459 5.63673 5.66636 5.99601 6.07776 6.37290 6.63357 6.84873 7.39071 8.89566 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.027562 B = 0.008360 C = 0.007465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.665069 B = 3348.375237 C = 3750.111499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.104 4.104 3 C -0.136 4.136 4 C 0.050 3.950 5 N -0.524 5.524 6 C 0.211 3.789 7 C -0.520 4.520 8 H 0.060 0.940 9 C 0.003 3.997 10 N -0.933 5.933 11 Si 0.965 3.035 12 H -0.269 1.269 13 H -0.283 1.283 14 H -0.269 1.269 15 C 0.058 3.942 16 H 0.069 0.931 17 C -0.195 4.195 18 C 0.058 3.942 19 O -0.397 6.397 20 C 0.048 3.952 21 H 0.054 0.946 22 H 0.069 0.931 23 H 0.055 0.945 24 H 0.084 0.916 25 H 0.047 0.953 26 H 0.049 0.951 27 H 0.064 0.936 28 H 0.055 0.945 29 H 0.039 0.961 30 H 0.004 0.996 31 H -0.036 1.036 32 H 0.264 0.736 33 H 0.072 0.928 34 H 0.102 0.898 35 H 0.107 0.893 36 H 0.062 0.938 37 H 0.102 0.898 38 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.073 0.692 -11.016 13.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.123 4.123 3 C -0.194 4.194 4 C -0.077 4.077 5 N -0.247 5.247 6 C 0.085 3.915 7 C -0.559 4.559 8 H 0.078 0.922 9 C -0.195 4.195 10 N -0.574 5.574 11 Si 0.790 3.210 12 H -0.194 1.194 13 H -0.208 1.208 14 H -0.194 1.194 15 C -0.052 4.052 16 H 0.087 0.913 17 C -0.234 4.234 18 C -0.019 4.019 19 O -0.316 6.316 20 C -0.029 4.029 21 H 0.073 0.927 22 H 0.088 0.912 23 H 0.075 0.925 24 H 0.102 0.898 25 H 0.066 0.934 26 H 0.068 0.932 27 H 0.083 0.917 28 H 0.073 0.927 29 H 0.056 0.944 30 H 0.022 0.978 31 H -0.018 1.018 32 H 0.073 0.927 33 H 0.091 0.909 34 H 0.120 0.880 35 H 0.125 0.875 36 H 0.080 0.920 37 H 0.119 0.881 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -7.869 1.171 -11.128 13.679 hybrid contribution 0.842 -0.898 1.189 1.711 sum -7.027 0.274 -9.939 12.175 Atomic orbital electron populations 1.21776 0.93725 1.01941 1.02330 1.21485 0.96344 0.96966 0.97477 1.21719 1.01130 0.95240 1.01280 1.22427 0.87706 0.98759 0.98841 1.62017 1.09195 1.49112 1.04366 1.19354 0.94595 0.91490 0.86034 1.21417 0.94079 1.41275 0.99108 0.92195 1.25856 1.03441 0.95042 0.95146 1.70066 1.38047 1.45183 1.04099 0.85502 0.79324 0.78937 0.77262 1.19419 1.20837 1.19419 1.23103 0.98268 0.91751 0.92066 0.91299 1.24052 1.01753 0.99835 0.97714 1.23353 1.01021 0.85821 0.91674 1.88336 1.83812 1.25288 1.34202 1.23547 0.99140 0.94564 0.85644 0.92719 0.91212 0.92546 0.89796 0.93364 0.93203 0.91737 0.92672 0.94360 0.97762 1.01840 0.92725 0.90937 0.87991 0.87524 0.92008 0.88072 0.92324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.07 9.19 71.98 0.66 -2.41 16 2 C -0.10 -2.90 1.79 -10.79 -0.02 -2.92 16 3 C -0.14 -3.79 8.27 71.98 0.60 -3.20 16 4 C 0.05 1.76 3.83 86.30 0.33 2.09 16 5 N -0.52 -21.94 3.88 -868.16 -3.37 -25.30 16 6 C 0.21 11.12 4.68 85.56 0.40 11.52 16 7 C -0.52 -29.35 8.41 25.60 0.22 -29.14 16 8 H 0.06 3.33 7.79 -2.91 -0.02 3.31 16 9 C 0.00 0.18 5.46 84.65 0.46 0.65 16 10 N -0.93 -56.00 13.29 21.45 0.28 -55.71 16 11 Si 0.96 44.40 29.54 68.60 2.03 46.43 16 12 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 13 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 14 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 15 C 0.06 2.19 2.82 46.17 0.13 2.32 16 16 H 0.07 3.01 7.19 -2.39 -0.02 2.99 16 17 C -0.19 -6.02 5.55 32.05 0.18 -5.85 16 18 C 0.06 1.53 7.78 72.65 0.56 2.10 16 19 O -0.40 -12.38 11.04 -148.98 -1.64 -14.03 16 20 C 0.05 1.59 6.45 72.45 0.47 2.05 16 21 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 22 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 23 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 24 H 0.08 2.40 3.98 -2.39 -0.01 2.40 16 25 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 26 H 0.05 1.60 6.78 -2.39 -0.02 1.59 16 27 H 0.06 1.49 8.14 -2.38 -0.02 1.47 16 28 H 0.05 2.04 7.84 -2.39 -0.02 2.02 16 29 H 0.04 1.30 5.64 -2.38 -0.01 1.29 16 30 H 0.00 0.24 7.79 -2.39 -0.02 0.23 16 31 H -0.04 -2.04 8.04 -2.39 -0.02 -2.06 16 32 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 33 H 0.07 2.30 8.14 -2.38 -0.02 2.28 16 34 H 0.10 2.97 4.38 -2.39 -0.01 2.96 16 35 H 0.11 2.23 8.14 -2.39 -0.02 2.22 16 36 H 0.06 1.58 8.14 -2.38 -0.02 1.56 16 37 H 0.10 3.25 3.44 -2.39 -0.01 3.24 16 38 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 Total: -1.00 -61.75 287.77 2.31 -59.44 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: 1.02 Total: 11.96 kcal Atomic # 6 Polarization: -26.78 SS G_CDS: 3.99 Total: -22.79 kcal Atomic # 7 Polarization: -77.93 SS G_CDS: -3.08 Total: -81.01 kcal Atomic # 8 Polarization: -12.38 SS G_CDS: -1.64 Total: -14.03 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Total: -61.75 2.31 -59.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069622571.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.969 kcal (2) G-P(sol) polarization free energy of solvation -61.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds