Wall clock time and date at job start Mon Mar 30 2020 03:25:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53007 * 109.47201 * 2 1 4 4 C 1.52997 * 109.47201 * 179.97438 * 3 2 1 5 5 H 1.08997 * 109.49059 * 304.97646 * 4 3 2 6 6 C 1.53092 * 109.48150 * 184.94080 * 4 3 2 7 7 C 1.53175 * 109.16179 * 182.41023 * 6 4 3 8 8 H 1.08997 * 109.54332 * 297.10912 * 7 6 4 9 9 N 1.46905 * 109.53865 * 176.85125 * 7 6 4 10 10 C 1.46895 * 110.99965 * 155.44711 * 9 7 6 11 11 C 1.50704 * 109.47509 * 180.02562 * 10 9 7 12 12 H 1.08001 * 119.99289 * 359.97438 * 11 10 9 13 13 C 1.37875 * 120.00390 * 179.97438 * 11 10 9 14 14 N 1.31517 * 119.99629 * 359.97438 * 13 11 10 15 15 Si 1.86796 * 120.00212 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.47027 * 89.99617 * 15 13 11 17 17 H 1.48493 * 109.47335 * 209.99998 * 15 13 11 18 18 H 1.48503 * 109.47059 * 330.00337 * 15 13 11 19 19 C 1.53176 * 109.03666 * 56.98460 * 7 6 4 20 20 C 1.53090 * 109.16134 * 303.01424 * 19 7 6 21 21 O 1.42900 * 109.41229 * 57.61417 * 20 19 7 22 22 H 1.09002 * 109.46883 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.46929 * 299.99412 * 1 2 3 24 24 H 1.08993 * 109.47701 * 59.99731 * 1 2 3 25 25 H 1.09000 * 109.46923 * 240.00032 * 2 1 3 26 26 H 1.09004 * 109.47316 * 120.00131 * 2 1 3 27 27 H 1.09000 * 109.46440 * 59.99963 * 3 2 1 28 28 H 1.08997 * 109.46772 * 300.00246 * 3 2 1 29 29 H 1.09006 * 109.51892 * 62.50257 * 6 4 3 30 30 H 1.08998 * 109.52361 * 302.31939 * 6 4 3 31 31 H 1.00897 * 110.99729 * 279.39663 * 9 7 6 32 32 H 1.09008 * 109.46828 * 299.99749 * 10 9 7 33 33 H 1.08997 * 109.47787 * 59.99531 * 10 9 7 34 34 H 0.96998 * 119.99439 * 179.97438 * 14 13 11 35 35 H 1.09001 * 109.52023 * 62.92336 * 19 7 6 36 36 H 1.08998 * 109.52257 * 183.04488 * 19 7 6 37 37 H 1.09003 * 109.47673 * 177.59165 * 20 19 7 38 38 H 1.08995 * 109.48193 * 297.61744 * 20 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 1 3.9333 0.8537 0.8428 6 6 4.0805 2.8805 0.1249 7 6 5.6110 2.8776 0.0643 8 1 6.0085 2.3199 0.9122 9 7 6.1070 4.2598 0.1071 10 6 7.4804 4.3104 0.6259 11 6 7.9538 5.7408 0.6556 12 1 7.2999 6.5330 0.3220 13 6 9.2216 6.0382 1.1087 14 7 10.0176 5.0735 1.5155 15 14 9.8086 7.8111 1.1449 16 1 9.4666 8.4192 2.4559 17 1 11.2802 7.8494 0.9504 18 1 9.1454 8.5744 0.0573 19 6 6.0581 2.2130 -1.2414 20 6 5.4712 0.8008 -1.3129 21 8 4.0471 0.8730 -1.2202 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5137 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5139 0.8900 27 1 1.6766 1.9563 0.8900 28 1 1.6766 1.9563 -0.8899 29 1 3.7543 3.3018 1.0759 30 1 3.6845 3.4798 -0.6949 31 1 6.0478 4.6934 -0.8020 32 1 7.5027 3.8996 1.6354 33 1 8.1345 3.7242 -0.0194 34 1 10.9096 5.2827 1.8339 35 1 5.7020 2.7988 -2.0888 36 1 7.1463 2.1580 -1.2681 37 1 5.7509 0.3385 -2.2596 38 1 5.8596 0.2036 -0.4880 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069859879.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:22 Heat of formation + Delta-G solvation = -77.576748 kcal Electronic energy + Delta-G solvation = -16017.630358 eV Core-core repulsion = 13472.697171 eV Total energy + Delta-G solvation = -2544.933187 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.42334 -35.81402 -34.82530 -32.83255 -31.18250 -30.50367 -27.20406 -25.95391 -23.26542 -22.57302 -21.47258 -20.72135 -19.90830 -16.51237 -16.37812 -15.66473 -14.92658 -14.73042 -14.49546 -14.05493 -14.04807 -13.52886 -13.04543 -12.78527 -12.35388 -12.14695 -12.11995 -11.53236 -11.41443 -11.21597 -10.93679 -10.86338 -10.81765 -10.72173 -10.58885 -10.40578 -10.14145 -9.84124 -9.33246 -9.09793 -8.49224 -7.28126 -6.04598 -4.06571 3.31455 3.37096 3.41031 3.92255 4.41306 4.65022 4.96629 5.03141 5.11643 5.16813 5.28442 5.29260 5.31574 5.40406 5.52974 5.61483 5.71799 5.76647 5.76928 5.83698 5.95879 6.04424 6.10796 6.17529 6.20373 6.29271 6.36296 6.52705 6.61721 7.23635 7.40516 7.43166 7.77642 8.11575 8.38561 8.60359 9.02879 9.58481 11.06485 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.056054 B = 0.004650 C = 0.004452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 499.394432 B = 6020.417718 C = 6288.106933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.123 4.123 3 C -0.110 4.110 4 C 0.090 3.910 5 H 0.054 0.946 6 C -0.135 4.135 7 C 0.086 3.914 8 H 0.069 0.931 9 N -0.684 5.684 10 C 0.194 3.806 11 C -0.515 4.515 12 H 0.062 0.938 13 C 0.055 3.945 14 N -0.898 5.898 15 Si 0.900 3.100 16 H -0.280 1.280 17 H -0.287 1.287 18 H -0.274 1.274 19 C -0.184 4.184 20 C 0.068 3.932 21 O -0.382 6.382 22 H 0.051 0.949 23 H 0.052 0.948 24 H 0.053 0.947 25 H 0.068 0.932 26 H 0.058 0.942 27 H 0.075 0.925 28 H 0.069 0.931 29 H 0.075 0.925 30 H 0.067 0.933 31 H 0.329 0.671 32 H 0.026 0.974 33 H -0.013 1.013 34 H 0.261 0.739 35 H 0.068 0.932 36 H 0.073 0.927 37 H 0.087 0.913 38 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.760 -9.605 -3.896 17.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.160 4.160 3 C -0.147 4.147 4 C 0.032 3.968 5 H 0.072 0.928 6 C -0.173 4.173 7 C -0.025 4.025 8 H 0.088 0.912 9 N -0.312 5.312 10 C 0.067 3.933 11 C -0.553 4.553 12 H 0.080 0.920 13 C -0.146 4.146 14 N -0.538 5.538 15 Si 0.727 3.273 16 H -0.206 1.206 17 H -0.213 1.213 18 H -0.198 1.198 19 C -0.224 4.224 20 C -0.010 4.010 21 O -0.302 6.302 22 H 0.070 0.930 23 H 0.071 0.929 24 H 0.072 0.928 25 H 0.087 0.913 26 H 0.076 0.924 27 H 0.093 0.907 28 H 0.088 0.912 29 H 0.094 0.906 30 H 0.086 0.914 31 H 0.146 0.854 32 H 0.044 0.956 33 H 0.005 0.995 34 H 0.071 0.929 35 H 0.086 0.914 36 H 0.092 0.908 37 H 0.106 0.894 38 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -13.973 -9.537 -3.335 17.243 hybrid contribution 1.304 0.685 -0.465 1.544 sum -12.669 -8.852 -3.800 15.916 Atomic orbital electron populations 1.21781 0.96191 1.01313 1.01658 1.21491 0.95316 0.96891 1.02324 1.21627 0.93061 0.97327 1.02720 1.22165 0.94154 0.93654 0.86846 0.92776 1.22211 0.96201 0.95871 1.03026 1.21549 0.94000 0.91428 0.95536 0.91227 1.60740 1.27042 1.13257 1.30186 1.19578 0.81923 0.96990 0.94781 1.21199 0.98610 0.92783 1.42740 0.91988 1.24994 0.96650 0.97559 0.95395 1.69964 1.08380 1.31777 1.43667 0.86475 0.77635 0.84672 0.78481 1.20597 1.21300 1.19838 1.22960 1.01743 0.97371 1.00316 1.22474 0.80895 0.96198 1.01422 1.87855 1.20995 1.82448 1.38858 0.93022 0.92913 0.92810 0.91333 0.92361 0.90675 0.91211 0.90644 0.91438 0.85365 0.95572 0.99531 0.92914 0.91366 0.90817 0.89444 0.93506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 9.91 37.16 0.37 -0.93 16 2 C -0.12 -1.23 5.83 -26.73 -0.16 -1.39 16 3 C -0.11 -1.22 4.92 -26.73 -0.13 -1.35 16 4 C 0.09 1.20 2.64 -26.69 -0.07 1.13 16 5 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 6 C -0.13 -2.04 5.03 -26.59 -0.13 -2.18 16 7 C 0.09 1.54 2.55 -67.53 -0.17 1.37 16 8 H 0.07 1.32 7.81 -51.93 -0.41 0.92 16 9 N -0.68 -14.78 6.24 -107.80 -0.67 -15.45 16 10 C 0.19 5.11 5.24 -4.98 -0.03 5.08 16 11 C -0.51 -14.71 9.32 -34.44 -0.32 -15.03 16 12 H 0.06 1.74 7.81 -52.49 -0.41 1.33 16 13 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 14 N -0.90 -26.96 13.29 55.43 0.74 -26.22 16 15 Si 0.90 21.81 29.54 -169.99 -5.02 16.79 16 16 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 17 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 18 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 19 C -0.18 -2.96 5.39 -26.59 -0.14 -3.10 16 20 C 0.07 0.93 6.84 37.20 0.25 1.18 16 21 O -0.38 -5.50 9.94 -35.23 -0.35 -5.85 16 22 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 23 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 24 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 25 H 0.07 0.75 7.82 -51.93 -0.41 0.34 16 26 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 31 H 0.33 6.90 8.44 -39.29 -0.33 6.56 16 32 H 0.03 0.75 8.06 -51.92 -0.42 0.33 16 33 H -0.01 -0.36 7.51 -51.93 -0.39 -0.75 16 34 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 35 H 0.07 1.08 8.09 -51.93 -0.42 0.66 16 36 H 0.07 1.27 7.55 -51.93 -0.39 0.88 16 37 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 304.43 15.07 4.59 4.59 Total: -1.00 -29.79 304.43 -8.31 -38.09 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: -6.96 Total: 1.77 kcal Atomic # 6 Polarization: -13.10 SS G_CDS: -0.63 Total: -13.73 kcal Atomic # 7 Polarization: -41.73 SS G_CDS: 0.06 Total: -41.67 kcal Atomic # 8 Polarization: -5.50 SS G_CDS: -0.35 Total: -5.85 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -29.79 -8.31 -38.09 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069859879.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.484 kcal (2) G-P(sol) polarization free energy of solvation -29.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds