Wall clock time and date at job start Mon Mar 30 2020 03:25:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53007 * 109.47201 * 2 1 4 4 C 1.52997 * 109.47201 * 179.97438 * 3 2 1 5 5 H 1.08997 * 109.49059 * 304.97646 * 4 3 2 6 6 C 1.53092 * 109.48150 * 184.94080 * 4 3 2 7 7 C 1.53175 * 109.16179 * 182.41023 * 6 4 3 8 8 H 1.08997 * 109.54332 * 297.10912 * 7 6 4 9 9 N 1.46905 * 109.53865 * 176.85125 * 7 6 4 10 10 C 1.46895 * 110.99965 * 155.44711 * 9 7 6 11 11 C 1.50704 * 109.47509 * 180.02562 * 10 9 7 12 12 H 1.08001 * 119.99289 * 359.97438 * 11 10 9 13 13 C 1.37875 * 120.00390 * 179.97438 * 11 10 9 14 14 N 1.31517 * 119.99629 * 359.97438 * 13 11 10 15 15 Si 1.86796 * 120.00212 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.47027 * 89.99617 * 15 13 11 17 17 H 1.48493 * 109.47335 * 209.99998 * 15 13 11 18 18 H 1.48503 * 109.47059 * 330.00337 * 15 13 11 19 19 C 1.53176 * 109.03666 * 56.98460 * 7 6 4 20 20 C 1.53090 * 109.16134 * 303.01424 * 19 7 6 21 21 O 1.42900 * 109.41229 * 57.61417 * 20 19 7 22 22 H 1.09002 * 109.46883 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.46929 * 299.99412 * 1 2 3 24 24 H 1.08993 * 109.47701 * 59.99731 * 1 2 3 25 25 H 1.09000 * 109.46923 * 240.00032 * 2 1 3 26 26 H 1.09004 * 109.47316 * 120.00131 * 2 1 3 27 27 H 1.09000 * 109.46440 * 59.99963 * 3 2 1 28 28 H 1.08997 * 109.46772 * 300.00246 * 3 2 1 29 29 H 1.09006 * 109.51892 * 62.50257 * 6 4 3 30 30 H 1.08998 * 109.52361 * 302.31939 * 6 4 3 31 31 H 1.00897 * 110.99729 * 279.39663 * 9 7 6 32 32 H 1.09008 * 109.46828 * 299.99749 * 10 9 7 33 33 H 1.08997 * 109.47787 * 59.99531 * 10 9 7 34 34 H 0.96998 * 119.99439 * 179.97438 * 14 13 11 35 35 H 1.09001 * 109.52023 * 62.92336 * 19 7 6 36 36 H 1.08998 * 109.52257 * 183.04488 * 19 7 6 37 37 H 1.09003 * 109.47673 * 177.59165 * 20 19 7 38 38 H 1.08995 * 109.48193 * 297.61744 * 20 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 1 3.9333 0.8537 0.8428 6 6 4.0805 2.8805 0.1249 7 6 5.6110 2.8776 0.0643 8 1 6.0085 2.3199 0.9122 9 7 6.1070 4.2598 0.1071 10 6 7.4804 4.3104 0.6259 11 6 7.9538 5.7408 0.6556 12 1 7.2999 6.5330 0.3220 13 6 9.2216 6.0382 1.1087 14 7 10.0176 5.0735 1.5155 15 14 9.8086 7.8111 1.1449 16 1 9.4666 8.4192 2.4559 17 1 11.2802 7.8494 0.9504 18 1 9.1454 8.5744 0.0573 19 6 6.0581 2.2130 -1.2414 20 6 5.4712 0.8008 -1.3129 21 8 4.0471 0.8730 -1.2202 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5137 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5139 0.8900 27 1 1.6766 1.9563 0.8900 28 1 1.6766 1.9563 -0.8899 29 1 3.7543 3.3018 1.0759 30 1 3.6845 3.4798 -0.6949 31 1 6.0478 4.6934 -0.8020 32 1 7.5027 3.8996 1.6354 33 1 8.1345 3.7242 -0.0194 34 1 10.9096 5.2827 1.8339 35 1 5.7020 2.7988 -2.0888 36 1 7.1463 2.1580 -1.2681 37 1 5.7509 0.3385 -2.2596 38 1 5.8596 0.2036 -0.4880 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069859879.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:21 Heat of formation + Delta-G solvation = -96.794272 kcal Electronic energy + Delta-G solvation = -16018.463692 eV Core-core repulsion = 13472.697171 eV Total energy + Delta-G solvation = -2545.766521 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.64594 -37.36539 -35.79618 -34.86455 -32.42347 -32.00526 -28.68031 -27.48198 -24.69542 -23.96412 -23.00085 -21.75948 -21.25909 -18.58505 -17.45312 -17.02419 -16.77303 -15.98672 -15.66518 -15.50856 -15.24425 -15.02818 -14.37500 -14.14912 -13.78317 -13.59141 -13.46758 -12.98162 -12.73017 -12.66317 -12.46158 -12.28123 -12.15522 -12.09921 -11.83337 -11.72329 -11.47140 -11.39935 -11.04103 -10.68821 -10.44663 -9.10014 -8.24722 -6.36260 1.40082 1.41931 1.53231 2.38417 2.83756 3.08456 3.38939 3.78206 3.88074 3.96565 4.14665 4.18422 4.21366 4.33062 4.38570 4.50294 4.67538 4.73862 4.76149 4.84172 4.89106 4.99675 5.02190 5.07178 5.12318 5.19873 5.21798 5.31385 5.34833 5.42662 5.53627 5.60062 5.99870 6.29693 6.42638 6.69045 6.86386 7.34911 8.86773 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.056054 B = 0.004650 C = 0.004452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 499.394432 B = 6020.417718 C = 6288.106933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.120 4.120 3 C -0.106 4.106 4 C 0.091 3.909 5 H 0.056 0.944 6 C -0.125 4.125 7 C 0.081 3.919 8 H 0.053 0.947 9 N -0.683 5.683 10 C 0.211 3.789 11 C -0.538 4.538 12 H 0.064 0.936 13 C 0.001 3.999 14 N -0.934 5.934 15 Si 0.974 3.026 16 H -0.273 1.273 17 H -0.281 1.281 18 H -0.263 1.263 19 C -0.178 4.178 20 C 0.071 3.929 21 O -0.386 6.386 22 H 0.059 0.941 23 H 0.058 0.942 24 H 0.054 0.946 25 H 0.058 0.942 26 H 0.060 0.940 27 H 0.087 0.913 28 H 0.068 0.932 29 H 0.074 0.926 30 H 0.068 0.932 31 H 0.334 0.666 32 H -0.004 1.004 33 H -0.036 1.036 34 H 0.265 0.735 35 H 0.071 0.929 36 H 0.055 0.945 37 H 0.110 0.890 38 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.911 -9.272 -4.314 18.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.158 4.158 3 C -0.143 4.143 4 C 0.033 3.967 5 H 0.074 0.926 6 C -0.163 4.163 7 C -0.029 4.029 8 H 0.071 0.929 9 N -0.312 5.312 10 C 0.083 3.917 11 C -0.576 4.576 12 H 0.082 0.918 13 C -0.197 4.197 14 N -0.574 5.574 15 Si 0.798 3.202 16 H -0.198 1.198 17 H -0.206 1.206 18 H -0.187 1.187 19 C -0.217 4.217 20 C -0.006 4.006 21 O -0.305 6.305 22 H 0.078 0.922 23 H 0.077 0.923 24 H 0.073 0.927 25 H 0.077 0.923 26 H 0.079 0.921 27 H 0.105 0.895 28 H 0.087 0.913 29 H 0.093 0.907 30 H 0.087 0.913 31 H 0.152 0.848 32 H 0.014 0.986 33 H -0.018 1.018 34 H 0.074 0.926 35 H 0.090 0.910 36 H 0.074 0.926 37 H 0.128 0.872 38 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -15.152 -9.218 -3.765 18.131 hybrid contribution 1.649 0.534 -0.326 1.764 sum -13.503 -8.684 -4.091 16.567 Atomic orbital electron populations 1.21759 0.94889 1.02030 1.02034 1.21458 0.96441 0.95906 1.01975 1.21629 0.91132 0.98315 1.03260 1.22237 0.95689 0.92052 0.86681 0.92570 1.22129 0.93650 0.97530 1.03039 1.21659 0.95905 0.89329 0.96038 0.92878 1.60640 1.24032 1.16012 1.30516 1.19196 0.83991 0.95714 0.92813 1.21561 0.99227 0.93663 1.43172 0.91815 1.25966 0.96692 1.02446 0.94606 1.70091 1.08851 1.34263 1.44197 0.85312 0.77219 0.78739 0.78905 1.19824 1.20609 1.18718 1.22849 1.00692 0.99062 0.99101 1.22507 0.80658 0.94516 1.02916 1.87869 1.21024 1.82324 1.39305 0.92188 0.92289 0.92694 0.92303 0.92114 0.89503 0.91301 0.90717 0.91311 0.84832 0.98597 1.01847 0.92577 0.91049 0.92622 0.87196 0.93034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.21 9.91 71.98 0.71 -1.50 16 2 C -0.12 -2.18 5.83 30.60 0.18 -2.00 16 3 C -0.11 -2.15 4.92 30.60 0.15 -1.99 16 4 C 0.09 2.30 2.64 30.62 0.08 2.38 16 5 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 6 C -0.13 -3.69 5.03 30.68 0.15 -3.54 16 7 C 0.08 2.93 2.55 45.03 0.11 3.05 16 8 H 0.05 2.08 7.81 -2.39 -0.02 2.06 16 9 N -0.68 -30.05 6.24 -494.96 -3.09 -33.14 16 10 C 0.21 11.48 5.24 85.56 0.45 11.93 16 11 C -0.54 -31.16 9.32 25.60 0.24 -30.92 16 12 H 0.06 3.59 7.81 -2.91 -0.02 3.56 16 13 C 0.00 0.07 5.46 84.65 0.46 0.53 16 14 N -0.93 -56.87 13.29 21.45 0.28 -56.58 16 15 Si 0.97 44.57 29.54 68.60 2.03 46.60 16 16 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 17 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 18 H -0.26 -11.50 7.11 99.48 0.71 -10.80 16 19 C -0.18 -5.68 5.39 30.68 0.17 -5.51 16 20 C 0.07 1.87 6.84 72.01 0.49 2.37 16 21 O -0.39 -10.43 9.94 -148.98 -1.48 -11.91 16 22 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 23 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 24 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 25 H 0.06 1.18 7.82 -2.39 -0.02 1.17 16 26 H 0.06 1.07 8.14 -2.38 -0.02 1.05 16 27 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 28 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.07 2.21 8.14 -2.38 -0.02 2.20 16 30 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 31 H 0.33 14.11 8.44 -89.70 -0.76 13.35 16 32 H 0.00 -0.24 8.06 -2.38 -0.02 -0.26 16 33 H -0.04 -2.10 7.51 -2.39 -0.02 -2.11 16 34 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 35 H 0.07 2.23 8.09 -2.39 -0.02 2.21 16 36 H 0.06 1.97 7.55 -2.39 -0.02 1.95 16 37 H 0.11 2.42 8.14 -2.39 -0.02 2.40 16 38 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 Total: -1.00 -63.53 304.43 1.18 -62.35 By element: Atomic # 1 Polarization: 17.66 SS G_CDS: 0.25 Total: 17.90 kcal Atomic # 6 Polarization: -28.41 SS G_CDS: 3.20 Total: -25.21 kcal Atomic # 7 Polarization: -86.92 SS G_CDS: -2.81 Total: -89.73 kcal Atomic # 8 Polarization: -10.43 SS G_CDS: -1.48 Total: -11.91 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Total: -63.53 1.18 -62.35 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069859879.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.446 kcal (2) G-P(sol) polarization free energy of solvation -63.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds