Wall clock time and date at job start Mon Mar 30 2020 03:23:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52997 * 109.47275 * 2 1 4 4 C 1.52995 * 109.47208 * 60.25516 * 3 2 1 5 5 C 1.53001 * 109.47011 * 300.25307 * 3 2 1 6 6 O 1.42901 * 109.47082 * 299.99973 * 5 3 2 7 7 N 1.46901 * 109.47056 * 180.25680 * 3 2 1 8 8 C 1.46907 * 110.99967 * 178.48913 * 7 3 2 9 9 C 1.53003 * 109.47071 * 178.06352 * 8 7 3 10 10 C 1.50704 * 115.54359 * 64.72391 * 9 8 7 11 11 H 1.08002 * 119.99710 * 267.11251 * 10 9 8 12 12 C 1.37873 * 120.00172 * 87.11906 * 10 9 8 13 13 N 1.31516 * 120.00122 * 179.24375 * 12 10 9 14 14 Si 1.86803 * 119.99918 * 359.23670 * 12 10 9 15 15 H 1.48505 * 109.46702 * 89.98290 * 14 12 10 16 16 H 1.48495 * 109.47249 * 209.97847 * 14 12 10 17 17 H 1.48498 * 109.47127 * 329.98357 * 14 12 10 18 18 C 1.52998 * 117.50169 * 279.05180 * 9 8 7 19 19 C 1.52992 * 117.50000 * 210.38728 * 9 8 7 20 20 H 1.08999 * 109.47506 * 60.00043 * 1 2 3 21 21 H 1.09001 * 109.47546 * 180.02562 * 1 2 3 22 22 H 1.09003 * 109.47088 * 299.99450 * 1 2 3 23 23 H 1.09006 * 109.47006 * 239.99793 * 2 1 3 24 24 H 1.08999 * 109.47496 * 120.00515 * 2 1 3 25 25 H 1.08998 * 109.47102 * 180.02562 * 4 3 2 26 26 H 1.08998 * 109.47055 * 299.99809 * 4 3 2 27 27 H 1.09003 * 109.47285 * 59.99902 * 4 3 2 28 28 H 1.08998 * 109.47196 * 60.00225 * 5 3 2 29 29 H 1.09001 * 109.47100 * 180.02562 * 5 3 2 30 30 H 0.96704 * 113.99763 * 179.97438 * 6 5 3 31 31 H 1.00895 * 111.00397 * 54.53518 * 7 3 2 32 32 H 1.09001 * 109.47100 * 298.06960 * 8 7 3 33 33 H 1.09004 * 109.47043 * 58.06511 * 8 7 3 34 34 H 0.97004 * 119.99935 * 179.97438 * 13 12 10 35 35 H 1.08998 * 117.49364 * 0.02562 * 18 9 8 36 36 H 1.08998 * 117.49554 * 145.01899 * 18 9 8 37 37 H 1.08995 * 117.50164 * 214.98598 * 19 9 8 38 38 H 1.09004 * 117.49815 * 359.97438 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5353 2.1619 1.2524 5 6 1.5248 2.1655 -1.2461 6 8 1.9962 1.4936 -2.4158 7 7 3.5090 1.4424 -0.0062 8 6 4.0353 2.8135 -0.0425 9 6 5.5642 2.7741 0.0007 10 6 6.2317 2.1319 -1.1881 11 1 6.4795 1.0810 -1.1658 12 6 6.5260 2.8861 -2.3042 13 7 7.1219 2.3290 -3.3358 14 14 6.0781 4.6990 -2.3510 15 1 7.2073 5.5017 -1.8161 16 1 5.8027 5.1048 -3.7527 17 1 4.8687 4.9317 -1.5215 18 6 6.2279 2.5922 1.3672 19 6 6.2827 3.9507 0.6640 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3633 0.5138 0.8901 23 1 1.8933 -0.5139 -0.8900 24 1 1.8933 -0.5139 0.8899 25 1 1.8982 3.1896 1.2521 26 1 0.4453 2.1619 1.2569 27 1 1.9023 1.6467 2.1401 28 1 0.4348 2.1656 -1.2415 29 1 1.8885 3.1931 -1.2463 30 1 1.7071 1.8981 -3.2452 31 1 3.8673 0.8970 -0.7757 32 1 3.7102 3.3032 -0.9604 33 1 3.6617 3.3690 0.8176 34 1 7.3286 2.8596 -4.1212 35 1 5.5752 2.5001 2.2353 36 1 7.1475 2.0083 1.4063 37 1 7.2383 4.2602 0.2409 38 1 5.6662 4.7532 1.0692 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083854446.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:13 Heat of formation + Delta-G solvation = -53.870509 kcal Electronic energy + Delta-G solvation = -17045.469024 eV Core-core repulsion = 14501.563817 eV Total energy + Delta-G solvation = -2543.905207 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.18228 -38.40129 -36.29928 -34.20510 -33.44152 -29.86284 -27.94845 -27.13934 -26.54853 -23.90183 -23.19966 -20.78709 -19.64749 -18.34483 -18.10582 -17.08814 -16.83055 -15.97706 -15.87969 -15.53823 -15.16243 -14.75043 -14.14974 -13.93144 -13.56825 -13.24372 -13.09790 -13.06865 -12.91867 -12.70915 -12.50912 -12.26524 -12.03720 -11.84624 -11.51632 -11.35246 -11.28439 -10.87546 -10.80609 -10.57415 -10.19501 -9.03583 -8.25569 -6.30435 1.33690 1.34948 1.48137 2.38123 3.04148 3.11017 3.39687 3.69687 3.96918 4.03585 4.19535 4.36544 4.39752 4.44824 4.52127 4.57975 4.59948 4.69057 4.77428 4.84948 4.89197 4.90695 5.03582 5.15055 5.19331 5.22262 5.27880 5.44607 5.46733 5.53759 5.56319 5.78487 6.35760 6.49354 6.62761 6.79456 6.87091 7.38263 8.90480 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.028618 B = 0.009635 C = 0.008527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.169904 B = 2905.346138 C = 3283.009982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.103 4.103 3 C 0.105 3.895 4 C -0.135 4.135 5 C 0.044 3.956 6 O -0.585 6.585 7 N -0.669 5.669 8 C 0.108 3.892 9 C -0.018 4.018 10 C -0.475 4.475 11 H 0.028 0.972 12 C 0.020 3.980 13 N -0.951 5.951 14 Si 0.942 3.058 15 H -0.273 1.273 16 H -0.301 1.301 17 H -0.237 1.237 18 C -0.155 4.155 19 C -0.201 4.201 20 H 0.054 0.946 21 H 0.061 0.939 22 H 0.071 0.929 23 H 0.044 0.956 24 H 0.063 0.937 25 H 0.051 0.949 26 H 0.083 0.917 27 H 0.067 0.933 28 H 0.071 0.929 29 H 0.032 0.968 30 H 0.388 0.612 31 H 0.339 0.661 32 H 0.009 0.991 33 H 0.069 0.931 34 H 0.262 0.738 35 H 0.100 0.900 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.293 2.310 7.645 17.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.141 4.141 3 C 0.014 3.986 4 C -0.192 4.192 5 C -0.036 4.036 6 O -0.391 6.391 7 N -0.299 5.299 8 C -0.021 4.021 9 C -0.019 4.019 10 C -0.513 4.513 11 H 0.046 0.954 12 C -0.177 4.177 13 N -0.591 5.591 14 Si 0.767 3.233 15 H -0.199 1.199 16 H -0.228 1.228 17 H -0.160 1.160 18 C -0.193 4.193 19 C -0.239 4.239 20 H 0.073 0.927 21 H 0.080 0.920 22 H 0.090 0.910 23 H 0.062 0.938 24 H 0.082 0.918 25 H 0.070 0.930 26 H 0.102 0.898 27 H 0.086 0.914 28 H 0.089 0.911 29 H 0.050 0.950 30 H 0.236 0.764 31 H 0.157 0.843 32 H 0.027 0.973 33 H 0.087 0.913 34 H 0.071 0.929 35 H 0.118 0.882 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -14.900 1.892 8.623 17.319 hybrid contribution 0.179 1.167 -2.104 2.412 sum -14.722 3.059 6.519 16.389 Atomic orbital electron populations 1.21821 0.93771 1.02281 1.02275 1.21372 0.96922 0.94462 1.01363 1.21229 0.87817 0.96400 0.93192 1.21861 1.01610 0.99679 0.96048 1.23079 0.98612 0.95004 0.86866 1.86494 1.78340 1.57442 1.16860 1.60645 1.05879 1.12694 1.50669 1.21503 0.92961 0.89888 0.97769 1.19330 0.91694 0.98571 0.92341 1.20418 1.37251 0.95307 0.98327 0.95364 1.25784 0.94262 1.02846 0.94804 1.70063 1.44040 1.38395 1.06649 0.85856 0.80550 0.80473 0.76372 1.19877 1.22825 1.16000 1.22692 1.02038 0.98257 0.96276 1.23025 1.02132 0.92259 1.06442 0.92725 0.92040 0.91039 0.93755 0.91777 0.93024 0.89820 0.91374 0.91149 0.95008 0.76391 0.84286 0.97272 0.91289 0.92874 0.88157 0.91241 0.91223 0.88230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.87 9.21 71.98 0.66 -2.21 16 2 C -0.10 -2.81 5.08 30.59 0.16 -2.66 16 3 C 0.11 3.11 0.55 3.53 0.00 3.11 16 4 C -0.13 -3.20 7.94 71.98 0.57 -2.63 16 5 C 0.04 1.25 5.17 71.98 0.37 1.62 16 6 O -0.58 -19.22 12.51 -148.98 -1.86 -21.09 16 7 N -0.67 -25.75 6.06 -470.16 -2.85 -28.60 16 8 C 0.11 4.37 4.39 86.30 0.38 4.75 16 9 C -0.02 -0.84 1.02 -52.93 -0.05 -0.90 16 10 C -0.48 -27.40 8.84 25.60 0.23 -27.17 16 11 H 0.03 1.85 8.06 -2.91 -0.02 1.83 16 12 C 0.02 1.16 5.47 84.65 0.46 1.63 16 13 N -0.95 -60.50 13.96 21.45 0.30 -60.20 16 14 Si 0.94 45.44 24.82 68.60 1.70 47.14 16 15 H -0.27 -12.78 7.11 99.48 0.71 -12.07 16 16 H -0.30 -14.56 7.11 99.48 0.71 -13.86 16 17 H -0.24 -10.41 5.81 99.48 0.58 -9.83 16 18 C -0.16 -6.36 9.96 30.62 0.30 -6.06 16 19 C -0.20 -8.32 7.59 30.62 0.23 -8.09 16 20 H 0.05 1.07 6.42 -2.39 -0.02 1.06 16 21 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 22 H 0.07 1.18 6.44 -2.39 -0.02 1.17 16 23 H 0.04 1.42 7.69 -2.38 -0.02 1.40 16 24 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 25 H 0.05 1.26 6.39 -2.39 -0.02 1.25 16 26 H 0.08 1.51 6.43 -2.39 -0.02 1.50 16 27 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 28 H 0.07 1.58 6.42 -2.39 -0.02 1.57 16 29 H 0.03 0.98 6.42 -2.39 -0.02 0.97 16 30 H 0.39 9.56 9.12 -74.05 -0.68 8.88 16 31 H 0.34 15.51 7.74 -89.70 -0.69 14.81 16 32 H 0.01 0.40 4.96 -2.39 -0.01 0.39 16 33 H 0.07 2.45 6.19 -2.38 -0.01 2.44 16 34 H 0.26 15.73 8.31 -92.71 -0.77 14.96 16 35 H 0.10 3.55 8.14 -2.39 -0.02 3.53 16 36 H 0.07 2.99 8.14 -2.39 -0.02 2.97 16 37 H 0.07 3.10 7.21 -2.39 -0.02 3.08 16 38 H 0.10 3.52 8.14 -2.39 -0.02 3.50 16 Total: -1.00 -67.55 289.25 0.16 -67.39 By element: Atomic # 1 Polarization: 34.40 SS G_CDS: -0.44 Total: 33.96 kcal Atomic # 6 Polarization: -41.91 SS G_CDS: 3.31 Total: -38.60 kcal Atomic # 7 Polarization: -86.25 SS G_CDS: -2.55 Total: -88.80 kcal Atomic # 8 Polarization: -19.22 SS G_CDS: -1.86 Total: -21.09 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 1.70 Total: 47.14 kcal Total: -67.55 0.16 -67.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083854446.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.516 kcal (2) G-P(sol) polarization free energy of solvation -67.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds