Wall clock time and date at job start Mon Mar 30 2020 02:55:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46626 * 2 1 4 4 C 1.53006 * 109.47000 * 180.02562 * 3 2 1 5 5 O 1.42898 * 112.93824 * 55.33232 * 4 3 2 6 6 C 1.53935 * 113.73431 * 283.77188 * 4 3 2 7 7 N 1.48190 * 86.10282 * 221.95530 * 6 4 3 8 8 C 1.46892 * 111.07127 * 137.51775 * 7 6 4 9 9 H 1.08998 * 109.47518 * 320.56374 * 8 7 6 10 10 C 1.50707 * 109.47032 * 200.56788 * 8 7 6 11 11 H 1.07993 * 119.99586 * 0.02562 * 10 8 7 12 12 C 1.37876 * 119.99956 * 180.02562 * 10 8 7 13 13 N 1.31520 * 119.99982 * 359.97438 * 12 10 8 14 14 Si 1.86803 * 119.99903 * 179.97438 * 12 10 8 15 15 H 1.48501 * 109.46851 * 89.99780 * 14 12 10 16 16 H 1.48493 * 109.47216 * 209.99546 * 14 12 10 17 17 H 1.48497 * 109.47015 * 330.00061 * 14 12 10 18 18 C 1.52999 * 109.47140 * 80.56752 * 8 7 6 19 19 C 1.52995 * 109.47274 * 294.99889 * 18 8 7 20 20 C 1.47968 * 90.79470 * 24.59721 * 7 6 4 21 21 H 1.09001 * 109.46801 * 59.99811 * 1 2 3 22 22 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47050 * 299.99699 * 1 2 3 24 24 H 1.08993 * 109.46955 * 120.00472 * 2 1 3 25 25 H 1.09000 * 109.47050 * 240.00301 * 2 1 3 26 26 H 1.08993 * 109.47839 * 299.99931 * 3 2 1 27 27 H 1.09000 * 109.47160 * 60.00369 * 3 2 1 28 28 H 0.96704 * 114.00159 * 309.67074 * 5 4 3 29 29 H 1.09004 * 113.75614 * 336.23426 * 6 4 3 30 30 H 1.08997 * 113.76209 * 107.59685 * 6 4 3 31 31 H 0.97000 * 119.99365 * 179.97438 * 13 12 10 32 32 H 1.09002 * 109.47106 * 55.00113 * 18 8 7 33 33 H 1.09001 * 109.47383 * 174.99521 * 18 8 7 34 34 H 1.09004 * 109.47062 * 180.02562 * 19 18 8 35 35 H 1.09002 * 109.47238 * 300.00143 * 19 18 8 36 36 H 1.08998 * 109.47032 * 60.00036 * 19 18 8 37 37 H 1.09001 * 113.75564 * 221.08337 * 20 7 6 38 38 H 1.09000 * 113.75656 * 89.72439 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 8 4.1265 0.6943 -1.0833 6 6 4.1902 1.1070 1.3677 7 7 5.1559 2.1944 1.0834 8 6 5.3868 3.0208 2.2756 9 1 4.4455 3.1643 2.8062 10 6 5.9379 4.3603 1.8594 11 1 6.1000 4.5761 0.8137 12 6 6.2352 5.3101 2.8136 13 7 6.0373 5.0474 4.0870 14 14 6.9190 6.9702 2.2976 15 1 5.7983 7.9158 2.0630 16 1 7.7966 7.4996 3.3721 17 1 7.7055 6.8147 1.0477 18 6 6.3890 2.3205 3.1954 19 6 5.7785 1.0184 3.7175 20 6 4.1895 2.8415 0.1686 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.8933 -0.5139 0.8899 25 1 1.8934 -0.5138 -0.8900 26 1 1.6767 1.9564 -0.8899 27 1 1.6766 1.9563 0.8900 28 1 3.7605 -0.1961 -1.1752 29 1 3.5314 1.3142 2.2111 30 1 4.6431 0.1167 1.4136 31 1 6.2468 5.7156 4.7582 32 1 7.2990 2.0974 2.6383 33 1 6.6281 2.9722 4.0357 34 1 6.4924 0.5196 4.3731 35 1 4.8686 1.2414 4.2745 36 1 5.5396 0.3666 2.8772 37 1 4.6421 3.2345 -0.7418 38 1 3.5307 3.5571 0.6606 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084363256.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:05 Heat of formation + Delta-G solvation = -29.445740 kcal Electronic energy + Delta-G solvation = -16766.859634 eV Core-core repulsion = 14224.013564 eV Total energy + Delta-G solvation = -2542.846070 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.83976 -36.04714 -33.95478 -33.36451 -31.44004 -28.74797 -27.19225 -25.32152 -24.14241 -22.48527 -21.15823 -19.37415 -19.10957 -16.46984 -16.39860 -15.56993 -15.12627 -14.46021 -14.18263 -13.58733 -13.18377 -13.09960 -12.59698 -12.50681 -12.13362 -11.94486 -11.64390 -11.57450 -11.25158 -11.21561 -11.09539 -10.78878 -10.69937 -10.66727 -10.18941 -9.88174 -9.60964 -9.59086 -8.93367 -8.73328 -8.41792 -7.56889 -6.00817 -4.06214 3.30589 3.37400 3.42580 4.37229 4.44634 4.70089 4.88676 4.94113 5.05989 5.27534 5.29896 5.50769 5.63840 5.78319 5.84652 5.94542 6.09544 6.12028 6.20132 6.25904 6.26866 6.30475 6.38231 6.48562 6.59634 6.66079 6.85050 7.02198 7.15155 7.50407 7.56590 7.83264 7.99319 8.11259 8.34102 8.51270 9.00765 9.58881 11.05098 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.031884 B = 0.007288 C = 0.006732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.961663 B = 3840.884999 C = 4158.273889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.127 4.127 3 C -0.139 4.139 4 C 0.092 3.908 5 O -0.533 6.533 6 C -0.018 4.018 7 N -0.464 5.464 8 C 0.185 3.815 9 H 0.005 0.995 10 C -0.506 4.506 11 H 0.061 0.939 12 C 0.060 3.940 13 N -0.892 5.892 14 Si 0.895 3.105 15 H -0.282 1.282 16 H -0.287 1.287 17 H -0.273 1.273 18 C -0.109 4.109 19 C -0.155 4.155 20 C 0.039 3.961 21 H 0.053 0.947 22 H 0.051 0.949 23 H 0.054 0.946 24 H 0.064 0.936 25 H 0.060 0.940 26 H 0.068 0.932 27 H 0.073 0.927 28 H 0.365 0.635 29 H 0.065 0.935 30 H 0.078 0.922 31 H 0.260 0.740 32 H 0.039 0.961 33 H 0.094 0.906 34 H 0.031 0.969 35 H 0.037 0.963 36 H 0.049 0.951 37 H 0.080 0.920 38 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.657 -8.726 -5.307 13.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.165 4.165 3 C -0.178 4.178 4 C 0.051 3.949 5 O -0.338 6.338 6 C -0.147 4.147 7 N -0.187 5.187 8 C 0.078 3.922 9 H 0.023 0.977 10 C -0.545 4.545 11 H 0.079 0.921 12 C -0.141 4.141 13 N -0.531 5.531 14 Si 0.723 3.277 15 H -0.208 1.208 16 H -0.212 1.212 17 H -0.198 1.198 18 C -0.148 4.148 19 C -0.213 4.213 20 C -0.090 4.090 21 H 0.072 0.928 22 H 0.071 0.929 23 H 0.073 0.927 24 H 0.083 0.917 25 H 0.079 0.921 26 H 0.086 0.914 27 H 0.092 0.908 28 H 0.212 0.788 29 H 0.083 0.917 30 H 0.096 0.904 31 H 0.070 0.930 32 H 0.058 0.942 33 H 0.112 0.888 34 H 0.050 0.950 35 H 0.056 0.944 36 H 0.068 0.932 37 H 0.098 0.902 38 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -7.604 -8.221 -5.406 12.435 hybrid contribution -0.696 0.705 0.429 1.080 sum -8.300 -7.515 -4.977 12.253 Atomic orbital electron populations 1.21750 0.95807 1.01347 1.01852 1.21503 0.96028 0.97066 1.01860 1.22192 0.95575 0.97075 1.02915 1.23006 0.90167 0.94679 0.87086 1.86584 1.66709 1.29610 1.50848 1.24652 0.95406 0.98909 0.95732 1.68605 1.29522 1.06804 1.13739 1.19801 0.94675 0.91177 0.86562 0.97743 1.21137 1.42678 0.97200 0.93455 0.92110 1.24931 0.95642 0.98650 0.94888 1.69890 1.48859 1.34479 0.99874 0.86537 0.78962 0.83867 0.78323 1.20783 1.21236 1.19816 1.21506 0.98185 0.94213 1.00869 1.22083 0.99728 0.99739 0.99717 1.23717 0.94236 0.92562 0.98489 0.92830 0.92946 0.92677 0.91723 0.92144 0.91352 0.90803 0.78785 0.91740 0.90363 0.92984 0.94188 0.88828 0.95021 0.94363 0.93244 0.90167 0.90490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 9.91 37.16 0.37 -1.02 16 2 C -0.13 -1.33 5.53 -26.73 -0.15 -1.48 16 3 C -0.14 -1.82 4.85 -26.73 -0.13 -1.95 16 4 C 0.09 1.51 1.47 -89.69 -0.13 1.38 16 5 O -0.53 -8.59 13.49 -35.23 -0.48 -9.06 16 6 C -0.02 -0.32 4.82 -2.63 -0.01 -0.33 16 7 N -0.46 -10.37 5.96 -231.35 -1.38 -11.75 16 8 C 0.18 4.70 1.38 -68.87 -0.10 4.61 16 9 H 0.00 0.14 7.63 -51.93 -0.40 -0.26 16 10 C -0.51 -14.08 8.08 -34.44 -0.28 -14.36 16 11 H 0.06 1.71 7.43 -52.49 -0.39 1.32 16 12 C 0.06 1.67 5.29 -17.82 -0.09 1.58 16 13 N -0.89 -25.48 11.29 55.43 0.63 -24.85 16 14 Si 0.90 21.55 29.54 -169.99 -5.02 16.53 16 15 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 16 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 17 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 18 C -0.11 -2.71 5.45 -26.73 -0.15 -2.85 16 19 C -0.16 -3.20 8.99 37.16 0.33 -2.86 16 20 C 0.04 0.79 6.30 -2.76 -0.02 0.77 16 21 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 22 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 23 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 24 H 0.06 0.69 8.01 -51.93 -0.42 0.27 16 25 H 0.06 0.56 6.77 -51.93 -0.35 0.21 16 26 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 27 H 0.07 1.00 8.09 -51.93 -0.42 0.58 16 28 H 0.37 4.25 7.24 45.56 0.33 4.58 16 29 H 0.06 1.18 7.37 -51.93 -0.38 0.80 16 30 H 0.08 1.36 6.87 -51.93 -0.36 1.00 16 31 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 32 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.09 2.56 5.95 -51.93 -0.31 2.25 16 34 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.05 0.95 4.89 -51.93 -0.25 0.69 16 37 H 0.08 1.67 8.14 -51.93 -0.42 1.24 16 38 H 0.08 1.58 7.86 -51.93 -0.41 1.17 16 LS Contribution 295.23 15.07 4.45 4.45 Total: -1.00 -29.77 295.23 -8.02 -37.79 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: -5.87 Total: 3.41 kcal Atomic # 6 Polarization: -16.16 SS G_CDS: -0.35 Total: -16.51 kcal Atomic # 7 Polarization: -35.85 SS G_CDS: -0.75 Total: -36.61 kcal Atomic # 8 Polarization: -8.59 SS G_CDS: -0.48 Total: -9.06 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -29.77 -8.02 -37.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084363256.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.349 kcal (2) G-P(sol) polarization free energy of solvation -29.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds