Wall clock time and date at job start Mon Mar 30 2020 02:55:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46626 * 2 1 4 4 C 1.53006 * 109.47000 * 180.02562 * 3 2 1 5 5 O 1.42898 * 112.93824 * 55.33232 * 4 3 2 6 6 C 1.53935 * 113.73431 * 283.77188 * 4 3 2 7 7 N 1.48190 * 86.10282 * 221.95530 * 6 4 3 8 8 C 1.46892 * 111.07127 * 137.51775 * 7 6 4 9 9 H 1.08998 * 109.47518 * 320.56374 * 8 7 6 10 10 C 1.50707 * 109.47032 * 200.56788 * 8 7 6 11 11 H 1.07993 * 119.99586 * 0.02562 * 10 8 7 12 12 C 1.37876 * 119.99956 * 180.02562 * 10 8 7 13 13 N 1.31520 * 119.99982 * 359.97438 * 12 10 8 14 14 Si 1.86803 * 119.99903 * 179.97438 * 12 10 8 15 15 H 1.48501 * 109.46851 * 89.99780 * 14 12 10 16 16 H 1.48493 * 109.47216 * 209.99546 * 14 12 10 17 17 H 1.48497 * 109.47015 * 330.00061 * 14 12 10 18 18 C 1.52999 * 109.47140 * 80.56752 * 8 7 6 19 19 C 1.52995 * 109.47274 * 294.99889 * 18 8 7 20 20 C 1.47968 * 90.79470 * 24.59721 * 7 6 4 21 21 H 1.09001 * 109.46801 * 59.99811 * 1 2 3 22 22 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47050 * 299.99699 * 1 2 3 24 24 H 1.08993 * 109.46955 * 120.00472 * 2 1 3 25 25 H 1.09000 * 109.47050 * 240.00301 * 2 1 3 26 26 H 1.08993 * 109.47839 * 299.99931 * 3 2 1 27 27 H 1.09000 * 109.47160 * 60.00369 * 3 2 1 28 28 H 0.96704 * 114.00159 * 309.67074 * 5 4 3 29 29 H 1.09004 * 113.75614 * 336.23426 * 6 4 3 30 30 H 1.08997 * 113.76209 * 107.59685 * 6 4 3 31 31 H 0.97000 * 119.99365 * 179.97438 * 13 12 10 32 32 H 1.09002 * 109.47106 * 55.00113 * 18 8 7 33 33 H 1.09001 * 109.47383 * 174.99521 * 18 8 7 34 34 H 1.09004 * 109.47062 * 180.02562 * 19 18 8 35 35 H 1.09002 * 109.47238 * 300.00143 * 19 18 8 36 36 H 1.08998 * 109.47032 * 60.00036 * 19 18 8 37 37 H 1.09001 * 113.75564 * 221.08337 * 20 7 6 38 38 H 1.09000 * 113.75656 * 89.72439 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 8 4.1265 0.6943 -1.0833 6 6 4.1902 1.1070 1.3677 7 7 5.1559 2.1944 1.0834 8 6 5.3868 3.0208 2.2756 9 1 4.4455 3.1643 2.8062 10 6 5.9379 4.3603 1.8594 11 1 6.1000 4.5761 0.8137 12 6 6.2352 5.3101 2.8136 13 7 6.0373 5.0474 4.0870 14 14 6.9190 6.9702 2.2976 15 1 5.7983 7.9158 2.0630 16 1 7.7966 7.4996 3.3721 17 1 7.7055 6.8147 1.0477 18 6 6.3890 2.3205 3.1954 19 6 5.7785 1.0184 3.7175 20 6 4.1895 2.8415 0.1686 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.8933 -0.5139 0.8899 25 1 1.8934 -0.5138 -0.8900 26 1 1.6767 1.9564 -0.8899 27 1 1.6766 1.9563 0.8900 28 1 3.7605 -0.1961 -1.1752 29 1 3.5314 1.3142 2.2111 30 1 4.6431 0.1167 1.4136 31 1 6.2468 5.7156 4.7582 32 1 7.2990 2.0974 2.6383 33 1 6.6281 2.9722 4.0357 34 1 6.4924 0.5196 4.3731 35 1 4.8686 1.2414 4.2745 36 1 5.5396 0.3666 2.8772 37 1 4.6421 3.2345 -0.7418 38 1 3.5307 3.5571 0.6606 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084363256.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:04 Heat of formation + Delta-G solvation = -51.428033 kcal Electronic energy + Delta-G solvation = -16767.812857 eV Core-core repulsion = 14224.013564 eV Total energy + Delta-G solvation = -2543.799294 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.35561 -37.56226 -35.20219 -34.92780 -33.37963 -30.25676 -28.71212 -26.84956 -25.92360 -24.06142 -22.26275 -21.19295 -20.56883 -18.47996 -17.78294 -17.17756 -16.44182 -16.03599 -15.69960 -15.16310 -14.82515 -14.51374 -14.03238 -13.82237 -13.59793 -13.32128 -13.19152 -13.02339 -12.89483 -12.70892 -12.60126 -12.50218 -12.10874 -12.06191 -11.62393 -11.55174 -11.52106 -11.02107 -10.80868 -10.54223 -10.36429 -9.33945 -8.13756 -6.26573 1.38011 1.39637 1.50444 2.39671 3.05038 3.12595 3.35797 3.66520 3.72888 4.15138 4.29336 4.34450 4.50800 4.59916 4.62001 4.66543 4.71837 4.76130 4.82789 4.89571 4.91598 5.02691 5.05502 5.16541 5.23688 5.29314 5.30607 5.39304 5.46140 5.56243 5.59494 5.71348 6.13113 6.31351 6.57029 6.87161 6.93309 7.42305 8.90951 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.031884 B = 0.007288 C = 0.006732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.961663 B = 3840.884999 C = 4158.273889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.123 4.123 3 C -0.132 4.132 4 C 0.118 3.882 5 O -0.546 6.546 6 C -0.014 4.014 7 N -0.485 5.485 8 C 0.193 3.807 9 H -0.023 1.023 10 C -0.526 4.526 11 H 0.048 0.952 12 C 0.015 3.985 13 N -0.915 5.915 14 Si 0.957 3.043 15 H -0.273 1.273 16 H -0.280 1.280 17 H -0.273 1.273 18 C -0.107 4.107 19 C -0.143 4.143 20 C 0.027 3.973 21 H 0.056 0.944 22 H 0.066 0.934 23 H 0.049 0.951 24 H 0.065 0.935 25 H 0.077 0.923 26 H 0.074 0.926 27 H 0.066 0.934 28 H 0.388 0.612 29 H 0.064 0.936 30 H 0.092 0.908 31 H 0.262 0.738 32 H 0.025 0.975 33 H 0.064 0.936 34 H 0.050 0.950 35 H 0.038 0.962 36 H 0.065 0.935 37 H 0.067 0.933 38 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.508 -9.923 -6.071 15.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.160 4.160 3 C -0.170 4.170 4 C 0.076 3.924 5 O -0.354 6.354 6 C -0.143 4.143 7 N -0.208 5.208 8 C 0.085 3.915 9 H -0.006 1.006 10 C -0.565 4.565 11 H 0.066 0.934 12 C -0.184 4.184 13 N -0.555 5.555 14 Si 0.782 3.218 15 H -0.199 1.199 16 H -0.206 1.206 17 H -0.198 1.198 18 C -0.145 4.145 19 C -0.200 4.200 20 C -0.102 4.102 21 H 0.075 0.925 22 H 0.085 0.915 23 H 0.069 0.931 24 H 0.083 0.917 25 H 0.095 0.905 26 H 0.093 0.907 27 H 0.085 0.915 28 H 0.238 0.762 29 H 0.082 0.918 30 H 0.110 0.890 31 H 0.071 0.929 32 H 0.044 0.956 33 H 0.082 0.918 34 H 0.069 0.931 35 H 0.057 0.943 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -8.469 -9.444 -6.180 14.110 hybrid contribution -0.421 1.051 0.626 1.293 sum -8.889 -8.393 -5.554 13.428 Atomic orbital electron populations 1.21738 0.94768 1.02308 1.01841 1.21496 0.96901 0.94923 1.02727 1.22112 0.92687 0.99286 1.02907 1.22607 0.92005 0.91700 0.86078 1.86531 1.67370 1.31269 1.50249 1.24674 0.94610 0.97993 0.97007 1.68530 1.31820 1.07739 1.12751 1.19575 0.93185 0.91097 0.87637 1.00567 1.21392 1.43183 0.98946 0.92945 0.93377 1.25670 0.95858 1.01971 0.94903 1.70007 1.49350 1.35494 1.00633 0.85576 0.78458 0.79831 0.77907 1.19901 1.20575 1.19822 1.21364 0.97762 0.95821 0.99568 1.21942 0.99847 0.97725 1.00512 1.23718 0.94150 0.94903 0.97444 0.92470 0.91512 0.93149 0.91652 0.90484 0.90721 0.91544 0.76159 0.91791 0.88964 0.92850 0.95615 0.91752 0.93120 0.94326 0.91641 0.91471 0.91534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.32 9.91 71.98 0.71 -1.61 16 2 C -0.12 -2.19 5.53 30.60 0.17 -2.02 16 3 C -0.13 -3.18 4.85 30.60 0.15 -3.03 16 4 C 0.12 3.69 1.47 -10.15 -0.01 3.67 16 5 O -0.55 -16.30 13.49 -148.98 -2.01 -18.31 16 6 C -0.01 -0.49 4.82 86.37 0.42 -0.07 16 7 N -0.49 -21.88 5.96 -889.07 -5.30 -27.18 16 8 C 0.19 10.06 1.38 44.17 0.06 10.12 16 9 H -0.02 -1.31 7.63 -2.39 -0.02 -1.33 16 10 C -0.53 -30.11 8.08 25.60 0.21 -29.90 16 11 H 0.05 2.80 7.43 -2.91 -0.02 2.78 16 12 C 0.02 0.85 5.29 84.65 0.45 1.30 16 13 N -0.92 -53.34 11.29 21.45 0.24 -53.10 16 14 Si 0.96 44.78 29.54 68.60 2.03 46.80 16 15 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 16 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 17 H -0.27 -12.69 7.11 99.48 0.71 -11.99 16 18 C -0.11 -5.37 5.45 30.59 0.17 -5.20 16 19 C -0.14 -5.74 8.99 71.98 0.65 -5.09 16 20 C 0.03 1.11 6.30 86.41 0.54 1.65 16 21 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 22 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 23 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 24 H 0.06 1.18 8.01 -2.39 -0.02 1.16 16 25 H 0.08 1.13 6.77 -2.39 -0.02 1.11 16 26 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 27 H 0.07 1.71 8.09 -2.39 -0.02 1.69 16 28 H 0.39 7.66 7.24 -74.05 -0.54 7.13 16 29 H 0.06 2.28 7.37 -2.39 -0.02 2.27 16 30 H 0.09 2.98 6.87 -2.39 -0.02 2.96 16 31 H 0.26 14.49 8.31 -92.71 -0.77 13.72 16 32 H 0.02 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.06 3.61 5.95 -2.39 -0.01 3.60 16 34 H 0.05 1.81 8.14 -2.38 -0.02 1.79 16 35 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.06 2.39 4.89 -2.39 -0.01 2.38 16 37 H 0.07 2.86 8.14 -2.39 -0.02 2.84 16 38 H 0.07 2.82 7.86 -2.39 -0.02 2.81 16 Total: -1.00 -64.71 295.23 -1.05 -65.76 By element: Atomic # 1 Polarization: 15.71 SS G_CDS: 0.49 Total: 16.19 kcal Atomic # 6 Polarization: -33.68 SS G_CDS: 3.51 Total: -30.17 kcal Atomic # 7 Polarization: -75.22 SS G_CDS: -5.06 Total: -80.28 kcal Atomic # 8 Polarization: -16.30 SS G_CDS: -2.01 Total: -18.31 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.80 kcal Total: -64.71 -1.05 -65.76 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084363256.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.335 kcal (2) G-P(sol) polarization free energy of solvation -64.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds