Wall clock time and date at job start Mon Mar 30 2020 02:48:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42900 * 113.99900 * 2 1 4 4 C 1.53000 * 109.46694 * 180.02562 * 3 2 1 5 5 N 1.46906 * 109.46772 * 65.00655 * 4 3 2 6 6 C 1.48534 * 110.99509 * 287.38897 * 5 4 3 7 7 C 1.54944 * 103.22252 * 200.27975 * 6 5 4 8 8 C 1.55029 * 102.92260 * 37.52894 * 7 6 5 9 9 H 1.09000 * 110.45983 * 96.76599 * 8 7 6 10 10 C 1.50702 * 110.35502 * 219.06254 * 8 7 6 11 11 H 1.08005 * 119.99600 * 115.49818 * 10 8 7 12 12 C 1.37878 * 120.00341 * 295.49188 * 10 8 7 13 13 N 1.31512 * 119.99891 * 180.02562 * 12 10 8 14 14 Si 1.86800 * 119.99832 * 0.02562 * 12 10 8 15 15 H 1.48500 * 109.46890 * 90.00039 * 14 12 10 16 16 H 1.48502 * 109.47203 * 209.99789 * 14 12 10 17 17 H 1.48502 * 109.47378 * 330.00149 * 14 12 10 18 18 C 1.47909 * 110.99533 * 169.99594 * 5 4 3 19 19 C 1.52997 * 109.91701 * 265.19230 * 18 5 4 20 20 C 1.52997 * 109.91912 * 26.29101 * 18 5 4 21 21 H 1.09001 * 109.47035 * 299.99501 * 1 2 3 22 22 H 1.08994 * 109.47263 * 59.99489 * 1 2 3 23 23 H 1.08997 * 109.47381 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.46787 * 60.00500 * 3 2 1 25 25 H 1.08991 * 109.47092 * 300.00105 * 3 2 1 26 26 H 1.08997 * 109.47697 * 305.00386 * 4 3 2 27 27 H 1.09004 * 109.46932 * 185.00070 * 4 3 2 28 28 H 1.08994 * 110.67332 * 318.71461 * 6 5 4 29 29 H 1.08992 * 110.66602 * 81.68560 * 6 5 4 30 30 H 1.09002 * 110.72350 * 155.77199 * 7 6 5 31 31 H 1.09000 * 110.72847 * 278.87986 * 7 6 5 32 32 H 0.97005 * 119.99964 * 180.02562 * 13 12 10 33 33 H 1.09002 * 109.47153 * 181.80603 * 19 18 5 34 34 H 1.09001 * 109.46832 * 61.80794 * 19 18 5 35 35 H 1.09004 * 109.47261 * 301.80776 * 19 18 5 36 36 H 1.09000 * 109.47161 * 298.19696 * 20 18 5 37 37 H 1.09008 * 109.47271 * 58.19457 * 20 18 5 38 38 H 1.08996 * 109.47192 * 178.18985 * 20 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9768 0.5627 -1.2563 6 6 3.6479 -0.8856 -1.2773 7 6 4.6083 -1.4516 -2.3534 8 6 5.9057 -0.6344 -2.1245 9 1 6.6028 -1.1933 -1.5001 10 6 6.5463 -0.2874 -3.4437 11 1 6.6256 0.7452 -3.7504 12 6 7.0311 -1.2879 -4.2591 13 7 7.5905 -0.9849 -5.4101 14 14 6.8934 -3.0738 -3.7289 15 1 5.6099 -3.6378 -4.2185 16 1 8.0244 -3.8483 -4.3001 17 1 6.9364 -3.1549 -2.2468 18 6 5.4465 0.6447 -1.4003 19 6 5.8213 1.8755 -2.2283 20 6 6.1018 0.7260 -0.0202 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3634 -1.0276 0.0005 24 1 1.6886 1.8463 0.8901 25 1 1.6886 1.8463 -0.8899 26 1 3.8515 0.5681 0.8408 27 1 3.9786 2.1764 0.0889 28 1 3.8474 -1.3396 -0.3066 29 1 2.6084 -1.0399 -1.5664 30 1 4.7894 -2.5137 -2.1886 31 1 4.2107 -1.2802 -3.3538 32 1 7.9313 -1.6888 -5.9840 33 1 6.9031 1.9112 -2.3570 34 1 5.4868 2.7757 -1.7128 35 1 5.3410 1.8164 -3.2050 36 1 5.7664 1.6298 0.4886 37 1 5.8202 -0.1476 0.5678 38 1 7.1855 0.7537 -0.1335 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259513715.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:21 Heat of formation + Delta-G solvation = -53.245116 kcal Electronic energy + Delta-G solvation = -17149.710298 eV Core-core repulsion = 14605.832210 eV Total energy + Delta-G solvation = -2543.878088 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.82694 -38.55185 -35.20142 -33.37740 -33.11313 -29.94177 -28.31742 -27.42616 -26.52089 -24.73307 -23.29604 -21.66749 -19.50591 -18.53983 -17.34315 -17.17976 -16.52599 -16.36735 -15.85111 -15.42957 -15.25415 -14.71989 -14.09980 -13.83801 -13.79790 -13.64478 -13.20749 -12.93310 -12.86480 -12.45553 -12.35594 -12.21888 -12.09809 -11.83998 -11.63132 -11.54241 -11.42808 -11.00286 -10.70975 -10.63700 -10.43882 -9.13013 -8.19022 -6.19323 1.33397 1.35204 1.44115 2.39030 3.00838 3.12707 3.17863 3.94655 4.03060 4.24082 4.33007 4.42052 4.45712 4.47629 4.57310 4.62175 4.64792 4.69691 4.78515 4.83807 4.89068 4.94462 4.99888 5.02104 5.12258 5.21480 5.28421 5.36574 5.39110 5.55062 5.67861 5.83266 6.24998 6.33953 6.41170 6.51425 6.88082 7.44405 8.95673 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.033189 B = 0.008707 C = 0.007704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.441030 B = 3215.081869 C = 3633.552725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.411 6.411 3 C 0.069 3.931 4 C 0.044 3.956 5 N -0.514 5.514 6 C 0.066 3.934 7 C -0.134 4.134 8 C 0.008 3.992 9 H 0.024 0.976 10 C -0.504 4.504 11 H 0.069 0.931 12 C 0.013 3.987 13 N -0.952 5.952 14 Si 0.928 3.072 15 H -0.272 1.272 16 H -0.296 1.296 17 H -0.252 1.252 18 C 0.099 3.901 19 C -0.096 4.096 20 C -0.158 4.158 21 H 0.053 0.947 22 H 0.041 0.959 23 H 0.089 0.911 24 H 0.073 0.927 25 H 0.050 0.950 26 H 0.044 0.956 27 H 0.099 0.901 28 H 0.038 0.962 29 H 0.084 0.916 30 H 0.046 0.954 31 H 0.050 0.950 32 H 0.261 0.739 33 H 0.043 0.957 34 H 0.052 0.948 35 H 0.037 0.963 36 H 0.077 0.923 37 H 0.050 0.950 38 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.777 3.243 14.067 18.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.330 6.330 3 C -0.008 4.008 4 C -0.084 4.084 5 N -0.239 5.239 6 C -0.062 4.062 7 C -0.172 4.172 8 C -0.011 4.011 9 H 0.042 0.958 10 C -0.542 4.542 11 H 0.087 0.913 12 C -0.183 4.183 13 N -0.594 5.594 14 Si 0.755 3.245 15 H -0.197 1.197 16 H -0.224 1.224 17 H -0.176 1.176 18 C 0.010 3.990 19 C -0.154 4.154 20 C -0.216 4.216 21 H 0.071 0.929 22 H 0.060 0.940 23 H 0.107 0.893 24 H 0.091 0.909 25 H 0.069 0.931 26 H 0.062 0.938 27 H 0.117 0.883 28 H 0.056 0.944 29 H 0.102 0.898 30 H 0.064 0.936 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.062 0.938 34 H 0.071 0.929 35 H 0.056 0.944 36 H 0.096 0.904 37 H 0.069 0.931 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -11.864 3.299 13.516 18.285 hybrid contribution 0.516 -1.223 0.107 1.331 sum -11.348 2.076 13.624 17.852 Atomic orbital electron populations 1.22831 0.80254 1.03256 1.00493 1.87930 1.20850 1.28782 1.95449 1.22613 0.92775 0.84600 1.00796 1.22452 0.94244 1.00603 0.91061 1.64790 1.11902 1.13418 1.33742 1.22979 0.99038 0.87802 0.96337 1.22939 0.97620 0.97759 0.98930 1.20110 0.92937 0.93164 0.94936 0.95778 1.21773 1.35381 0.95148 1.01913 0.91330 1.25741 0.95048 1.02656 0.94860 1.70034 1.42776 1.34073 1.12492 0.86096 0.77315 0.81430 0.79663 1.19723 1.22359 1.17602 1.21629 0.86788 0.96130 0.94436 1.21511 0.99570 0.95464 0.98838 1.22366 1.01096 1.01831 0.96325 0.92863 0.94022 0.89264 0.90871 0.93122 0.93768 0.88265 0.94364 0.89778 0.93568 0.93161 0.93007 0.93818 0.92886 0.94416 0.90406 0.93128 0.92727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 11.01 113.37 1.25 1.76 16 2 O -0.41 -10.57 8.07 -148.98 -1.20 -11.77 16 3 C 0.07 1.59 6.25 71.98 0.45 2.04 16 4 C 0.04 1.19 4.15 86.30 0.36 1.55 16 5 N -0.51 -18.15 4.87 -834.10 -4.06 -22.21 16 6 C 0.07 2.42 5.32 86.65 0.46 2.88 16 7 C -0.13 -5.90 4.96 31.95 0.16 -5.75 16 8 C 0.01 0.37 2.08 -10.51 -0.02 0.35 16 9 H 0.02 1.16 6.63 -2.39 -0.02 1.15 16 10 C -0.50 -28.44 8.10 25.60 0.21 -28.23 16 11 H 0.07 4.14 4.94 -2.91 -0.01 4.13 16 12 C 0.01 0.76 5.46 84.66 0.46 1.22 16 13 N -0.95 -60.23 13.96 21.45 0.30 -59.93 16 14 Si 0.93 45.91 24.88 68.60 1.71 47.62 16 15 H -0.27 -13.05 7.11 99.48 0.71 -12.35 16 16 H -0.30 -14.62 7.11 99.48 0.71 -13.91 16 17 H -0.25 -11.70 6.41 99.48 0.64 -11.06 16 18 C 0.10 3.85 0.86 3.67 0.00 3.85 16 19 C -0.10 -3.86 7.32 71.98 0.53 -3.33 16 20 C -0.16 -5.03 7.08 71.98 0.51 -4.52 16 21 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 22 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 23 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 24 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 25 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 26 H 0.04 1.17 6.73 -2.39 -0.02 1.16 16 27 H 0.10 2.33 7.12 -2.38 -0.02 2.31 16 28 H 0.04 1.34 7.81 -2.39 -0.02 1.32 16 29 H 0.08 3.00 6.79 -2.39 -0.02 2.98 16 30 H 0.05 1.97 6.20 -2.39 -0.01 1.96 16 31 H 0.05 2.43 7.88 -2.39 -0.02 2.41 16 32 H 0.26 15.64 8.31 -92.70 -0.77 14.86 16 33 H 0.04 1.86 7.24 -2.39 -0.02 1.84 16 34 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 35 H 0.04 1.72 6.99 -2.38 -0.02 1.70 16 36 H 0.08 2.02 6.44 -2.39 -0.02 2.00 16 37 H 0.05 1.56 7.69 -2.38 -0.02 1.54 16 38 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 Total: -1.00 -65.60 282.74 2.05 -63.55 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: 0.95 Total: 10.92 kcal Atomic # 6 Polarization: -32.54 SS G_CDS: 4.36 Total: -28.18 kcal Atomic # 7 Polarization: -78.37 SS G_CDS: -3.76 Total: -82.13 kcal Atomic # 8 Polarization: -10.57 SS G_CDS: -1.20 Total: -11.77 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 1.71 Total: 47.62 kcal Total: -65.60 2.05 -63.55 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259513715.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.301 kcal (2) G-P(sol) polarization free energy of solvation -65.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds