Wall clock time and date at job start Mon Mar 30 2020 03:04:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47101 * 2 1 4 4 C 1.52996 * 109.46910 * 239.99884 * 2 1 3 5 5 C 1.52996 * 109.46974 * 120.00138 * 2 1 3 6 6 H 1.09003 * 109.47411 * 203.97247 * 5 2 1 7 7 C 1.50697 * 109.47449 * 83.97230 * 5 2 1 8 8 H 1.08005 * 119.99915 * 276.49061 * 7 5 2 9 9 C 1.37878 * 120.00273 * 96.21810 * 7 5 2 10 10 N 1.31516 * 119.99923 * 15.78054 * 9 7 5 11 11 Si 1.86793 * 120.00154 * 195.79106 * 9 7 5 12 12 H 1.48504 * 109.47244 * 359.97438 * 11 9 7 13 13 H 1.48501 * 109.47740 * 119.99593 * 11 9 7 14 14 H 1.48503 * 109.47139 * 239.99655 * 11 9 7 15 15 N 1.46901 * 109.47307 * 323.97067 * 5 2 1 16 16 C 1.47017 * 111.00019 * 300.23806 * 15 5 2 17 17 C 1.53099 * 109.25905 * 177.60553 * 16 15 5 18 18 O 1.43020 * 109.25700 * 56.85341 * 17 16 15 19 19 C 1.43014 * 113.73202 * 301.32725 * 18 17 16 20 20 C 1.47015 * 111.00253 * 176.60761 * 15 5 2 21 21 H 1.08997 * 109.47046 * 299.99747 * 1 2 3 22 22 H 1.09001 * 109.47282 * 59.99982 * 1 2 3 23 23 H 1.09003 * 109.47218 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.46923 * 200.09438 * 3 2 1 25 25 H 1.09006 * 109.46812 * 320.09374 * 3 2 1 26 26 H 1.09000 * 109.47371 * 80.09356 * 3 2 1 27 27 H 1.09000 * 109.47553 * 290.89943 * 4 2 1 28 28 H 1.08998 * 109.47088 * 50.89941 * 4 2 1 29 29 H 1.09002 * 109.47089 * 170.90200 * 4 2 1 30 30 H 0.96992 * 120.00014 * 180.02562 * 10 9 7 31 31 H 1.09001 * 109.50484 * 297.54567 * 16 15 5 32 32 H 1.09002 * 109.50635 * 57.67482 * 16 15 5 33 33 H 1.08996 * 109.50451 * 296.91671 * 17 16 15 34 34 H 1.08997 * 109.53916 * 176.80709 * 17 16 15 35 35 H 1.09000 * 109.51101 * 298.73159 * 19 18 17 36 36 H 1.09012 * 109.53753 * 178.62828 * 19 18 17 37 37 H 1.09006 * 109.50130 * 302.32451 * 20 15 5 38 38 H 1.08994 * 109.50872 * 62.41083 * 20 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0400 -0.7213 1.2492 6 1 3.0464 -0.3745 1.4836 7 6 2.0668 -2.2066 0.9960 8 1 1.1683 -2.7923 1.1230 9 6 3.2369 -2.8169 0.5968 10 7 4.3850 -2.1899 0.7322 11 14 3.1915 -4.5342 -0.1366 12 1 1.7878 -5.0172 -0.1797 13 1 3.7458 -4.4993 -1.5138 14 1 4.0047 -5.4519 0.7011 15 7 1.1472 -0.4333 2.3797 16 6 1.0917 1.0102 2.6528 17 6 0.1070 1.2704 3.7959 18 8 0.5073 0.5172 4.9439 19 6 0.5713 -0.8928 4.7136 20 6 1.5607 -1.1749 3.5799 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 3.0710 1.4633 -0.3531 25 1 1.4178 2.0478 -0.6593 26 1 1.9944 1.8440 1.0123 27 1 1.8155 -1.7851 -1.1717 28 1 1.5500 -0.3099 -2.1317 29 1 3.1178 -0.5827 -1.3342 30 1 5.2081 -2.6191 0.4510 31 1 2.0822 1.3650 2.9377 32 1 0.7588 1.5373 1.7586 33 1 -0.8938 0.9647 3.4908 34 1 0.1045 2.3326 4.0402 35 1 -0.4160 -1.2614 4.4353 36 1 0.9050 -1.3957 5.6214 37 1 1.5702 -2.2430 3.3624 38 1 2.5589 -0.8555 3.8791 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259716042.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:49 Heat of formation + Delta-G solvation = -50.379045 kcal Electronic energy + Delta-G solvation = -17634.791882 eV Core-core repulsion = 15091.038076 eV Total energy + Delta-G solvation = -2543.753806 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.78633 -38.56710 -34.93306 -34.53044 -32.02294 -29.64090 -28.04810 -27.85042 -26.64692 -24.54859 -23.92459 -21.09089 -19.63512 -18.21505 -17.42844 -16.88781 -16.35830 -16.15829 -15.74349 -15.44353 -15.06131 -14.72027 -14.48867 -14.17588 -13.52467 -13.29918 -12.81130 -12.79164 -12.67997 -12.52152 -12.34478 -12.24969 -12.09322 -12.06167 -11.67374 -11.47372 -11.18478 -10.96800 -10.67321 -10.48934 -10.17333 -8.91723 -8.11677 -6.10046 1.36203 1.42042 1.51057 2.42218 2.99489 3.15373 3.38795 4.11659 4.28921 4.31746 4.33042 4.38442 4.42514 4.47347 4.50575 4.73528 4.83447 4.92708 4.96095 4.99031 5.03697 5.13928 5.15108 5.20352 5.22500 5.36329 5.39077 5.64426 5.67845 5.77028 5.88912 5.91686 6.24623 6.30252 6.38562 6.78937 7.04302 7.51090 8.96101 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.026351 B = 0.011418 C = 0.009090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.332933 B = 2451.670807 C = 3079.690699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.061 4.061 3 C -0.154 4.154 4 C -0.111 4.111 5 C 0.215 3.785 6 H -0.012 1.012 7 C -0.496 4.496 8 H 0.051 0.949 9 C 0.032 3.968 10 N -0.919 5.919 11 Si 0.929 3.071 12 H -0.264 1.264 13 H -0.282 1.282 14 H -0.287 1.287 15 N -0.526 5.526 16 C -0.001 4.001 17 C 0.065 3.935 18 O -0.406 6.406 19 C 0.072 3.928 20 C 0.038 3.962 21 H 0.065 0.935 22 H 0.047 0.953 23 H 0.036 0.964 24 H 0.028 0.972 25 H 0.067 0.933 26 H 0.066 0.934 27 H 0.052 0.948 28 H 0.045 0.955 29 H 0.018 0.982 30 H 0.258 0.742 31 H 0.008 0.992 32 H 0.113 0.887 33 H 0.065 0.935 34 H 0.115 0.885 35 H 0.064 0.936 36 H 0.106 0.894 37 H 0.075 0.925 38 H -0.002 1.002 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.065 5.510 1.982 9.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.062 4.062 3 C -0.211 4.211 4 C -0.169 4.169 5 C 0.108 3.892 6 H 0.006 0.994 7 C -0.534 4.534 8 H 0.069 0.931 9 C -0.168 4.168 10 N -0.558 5.558 11 Si 0.756 3.244 12 H -0.188 1.188 13 H -0.207 1.207 14 H -0.214 1.214 15 N -0.251 5.251 16 C -0.129 4.129 17 C -0.011 4.011 18 O -0.325 6.325 19 C -0.004 4.004 20 C -0.091 4.091 21 H 0.083 0.917 22 H 0.066 0.934 23 H 0.055 0.945 24 H 0.047 0.953 25 H 0.086 0.914 26 H 0.085 0.915 27 H 0.071 0.929 28 H 0.064 0.936 29 H 0.037 0.963 30 H 0.067 0.933 31 H 0.026 0.974 32 H 0.130 0.870 33 H 0.084 0.916 34 H 0.133 0.867 35 H 0.082 0.918 36 H 0.124 0.876 37 H 0.093 0.907 38 H 0.016 0.984 Dipole moment (debyes) X Y Z Total from point charges -8.309 5.417 2.002 10.119 hybrid contribution 1.668 -1.041 -0.553 2.043 sum -6.641 4.375 1.449 8.084 Atomic orbital electron populations 1.21634 0.93725 1.00786 1.00532 1.20600 0.96237 0.93613 0.95745 1.22383 0.99798 0.96729 1.02218 1.21672 0.98226 1.01063 0.95939 1.19358 0.88712 0.94421 0.86691 0.99393 1.21006 0.94721 0.93413 1.44273 0.93093 1.25461 0.95062 1.00126 0.96108 1.70105 0.98052 1.40058 1.47616 0.85954 0.78388 0.81586 0.78513 1.18811 1.20741 1.21382 1.62518 1.52300 1.05226 1.05035 1.23357 0.97774 0.91311 1.00458 1.22834 0.96903 0.96809 0.84588 1.87872 1.89672 1.18964 1.36035 1.22714 0.98627 0.81355 0.97743 1.22437 0.95320 1.00110 0.91206 0.91660 0.93377 0.94499 0.95254 0.91396 0.91512 0.92869 0.93607 0.96269 0.93272 0.97375 0.86979 0.91636 0.86741 0.91782 0.87554 0.90700 0.98408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.88 7.67 71.98 0.55 -3.33 16 2 C -0.06 -2.50 0.58 -52.18 -0.03 -2.53 16 3 C -0.15 -5.58 7.98 71.98 0.57 -5.01 16 4 C -0.11 -4.83 7.60 71.98 0.55 -4.29 16 5 C 0.21 10.27 1.48 44.17 0.07 10.33 16 6 H -0.01 -0.68 6.95 -2.39 -0.02 -0.69 16 7 C -0.50 -25.79 4.97 25.60 0.13 -25.66 16 8 H 0.05 2.71 7.86 -2.91 -0.02 2.69 16 9 C 0.03 1.71 4.24 84.65 0.36 2.07 16 10 N -0.92 -52.70 12.79 21.45 0.27 -52.43 16 11 Si 0.93 42.79 29.44 68.60 2.02 44.81 16 12 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 13 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 14 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 15 N -0.53 -21.78 3.53 -874.36 -3.08 -24.86 16 16 C 0.00 -0.04 3.37 86.31 0.29 0.25 16 17 C 0.07 1.89 7.01 72.02 0.50 2.40 16 18 O -0.41 -13.57 10.83 -148.98 -1.61 -15.18 16 19 C 0.07 2.37 7.01 72.01 0.50 2.87 16 20 C 0.04 1.58 5.37 86.31 0.46 2.05 16 21 H 0.06 2.16 5.26 -2.39 -0.01 2.14 16 22 H 0.05 1.46 8.13 -2.39 -0.02 1.44 16 23 H 0.04 1.41 8.09 -2.39 -0.02 1.40 16 24 H 0.03 1.13 7.84 -2.39 -0.02 1.11 16 25 H 0.07 2.03 7.97 -2.38 -0.02 2.01 16 26 H 0.07 2.32 4.26 -2.39 -0.01 2.31 16 27 H 0.05 2.50 5.79 -2.39 -0.01 2.48 16 28 H 0.04 1.68 8.12 -2.39 -0.02 1.66 16 29 H 0.02 0.88 7.94 -2.39 -0.02 0.86 16 30 H 0.26 14.25 8.31 -92.71 -0.77 13.48 16 31 H 0.01 0.32 7.86 -2.39 -0.02 0.30 16 32 H 0.11 3.58 3.67 -2.39 -0.01 3.57 16 33 H 0.07 1.75 8.14 -2.39 -0.02 1.74 16 34 H 0.11 2.64 8.14 -2.39 -0.02 2.62 16 35 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 36 H 0.11 3.00 8.14 -2.38 -0.02 2.98 16 37 H 0.07 3.37 6.91 -2.38 -0.02 3.35 16 38 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 Total: -1.00 -59.54 280.85 2.57 -56.97 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: 1.02 Total: 11.53 kcal Atomic # 6 Polarization: -24.80 SS G_CDS: 3.96 Total: -20.84 kcal Atomic # 7 Polarization: -74.48 SS G_CDS: -2.81 Total: -77.29 kcal Atomic # 8 Polarization: -13.57 SS G_CDS: -1.61 Total: -15.18 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.02 Total: 44.81 kcal Total: -59.54 2.57 -56.97 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259716042.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.588 kcal (2) G-P(sol) polarization free energy of solvation -59.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds