Wall clock time and date at job start Mon Mar 30 2020 03:28:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47324 * 2 1 4 4 C 1.52998 * 109.47530 * 120.00115 * 2 1 3 5 5 H 1.08999 * 109.47050 * 183.27190 * 4 2 1 6 6 C 1.53000 * 109.46796 * 63.27606 * 4 2 1 7 7 C 1.50701 * 109.47007 * 172.72165 * 6 4 2 8 8 H 1.08000 * 119.99995 * 354.28176 * 7 6 4 9 9 C 1.37877 * 120.00168 * 174.28115 * 7 6 4 10 10 N 1.31513 * 120.00600 * 179.97438 * 9 7 6 11 11 Si 1.86808 * 119.99879 * 359.97438 * 9 7 6 12 12 H 1.48504 * 109.46877 * 89.99636 * 11 9 7 13 13 H 1.48497 * 109.47042 * 209.99911 * 11 9 7 14 14 H 1.48497 * 109.47311 * 330.00161 * 11 9 7 15 15 N 1.46902 * 109.47185 * 303.27752 * 4 2 1 16 16 C 1.47013 * 110.99490 * 214.38463 * 15 4 2 17 17 C 1.53106 * 109.25503 * 177.60416 * 16 15 4 18 18 O 1.43020 * 109.25416 * 56.84513 * 17 16 15 19 19 C 1.43010 * 113.73935 * 301.32894 * 18 17 16 20 20 C 1.47005 * 111.00008 * 90.74516 * 15 4 2 21 21 H 1.09003 * 109.46723 * 309.08602 * 1 2 3 22 22 H 1.08991 * 109.47315 * 69.08500 * 1 2 3 23 23 H 1.08995 * 109.46541 * 189.09006 * 1 2 3 24 24 H 1.09003 * 109.47178 * 240.00394 * 2 1 3 25 25 H 1.09000 * 109.47032 * 64.80582 * 3 2 1 26 26 H 1.08995 * 109.47527 * 184.80754 * 3 2 1 27 27 H 1.09003 * 109.47131 * 304.81285 * 3 2 1 28 28 H 1.09005 * 109.46802 * 292.71665 * 6 4 2 29 29 H 1.08999 * 109.47664 * 52.71629 * 6 4 2 30 30 H 0.96994 * 120.00432 * 179.97438 * 10 9 7 31 31 H 1.09001 * 109.50847 * 297.53569 * 16 15 4 32 32 H 1.08997 * 109.50806 * 57.67325 * 16 15 4 33 33 H 1.08998 * 109.50271 * 296.91447 * 17 16 15 34 34 H 1.08993 * 109.50712 * 176.77660 * 17 16 15 35 35 H 1.08997 * 109.51057 * 298.73640 * 19 18 17 36 36 H 1.09002 * 109.53917 * 178.63142 * 19 18 17 37 37 H 1.08995 * 109.51256 * 302.32892 * 20 15 4 38 38 H 1.08997 * 109.50731 * 62.46019 * 20 15 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 1 3.1285 -0.6707 1.2789 6 6 1.5986 -2.1856 1.2086 7 6 2.2473 -2.9375 2.3420 8 1 2.9788 -2.4467 2.9669 9 6 1.9071 -4.2520 2.5814 10 7 2.4736 -4.9084 3.5702 11 14 0.6413 -5.1008 1.5010 12 1 1.3249 -5.7465 0.3516 13 1 -0.0746 -6.1320 2.2942 14 1 -0.3323 -4.0985 0.9984 15 7 1.4869 -0.0760 2.4474 16 6 2.4509 -0.1106 3.5568 17 6 1.8587 0.6230 4.7632 18 8 0.6086 0.0228 5.1131 19 6 -0.3541 0.0398 4.0557 20 6 0.2156 -0.6997 2.8421 21 1 -0.3633 0.6480 0.7977 22 1 -0.3633 0.3668 -0.9599 23 1 -0.3632 -1.0147 0.1624 24 1 1.8934 -0.5138 -0.8900 25 1 1.7488 1.9308 0.9299 26 1 3.1266 1.4437 -0.0861 27 1 1.6081 1.9806 -0.8438 28 1 0.5146 -2.2411 1.3091 29 1 1.8985 -2.6294 0.2593 30 1 2.2340 -5.8331 3.7388 31 1 2.6585 -1.1461 3.8265 32 1 3.3755 0.3790 3.2511 33 1 1.7010 1.6714 4.5101 34 1 2.5457 0.5507 5.6063 35 1 -0.5762 1.0712 3.7821 36 1 -1.2679 -0.4538 4.3866 37 1 -0.4915 -0.6402 2.0148 38 1 0.3875 -1.7446 3.1004 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259779477.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:27 Heat of formation + Delta-G solvation = -40.758296 kcal Electronic energy + Delta-G solvation = -17547.946811 eV Core-core repulsion = 15004.610191 eV Total energy + Delta-G solvation = -2543.336619 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.43880 -36.90312 -33.32132 -32.55621 -30.64544 -29.64145 -27.07904 -26.38940 -24.02744 -23.37106 -21.07185 -19.78846 -18.63155 -16.90798 -15.83177 -15.39606 -14.81178 -14.54661 -14.40597 -14.17655 -13.80784 -13.35656 -12.76189 -12.56157 -12.27153 -12.00178 -11.59976 -11.43166 -11.30020 -11.07411 -10.78078 -10.55150 -10.38894 -10.33290 -10.29010 -9.72913 -9.71368 -9.55349 -9.20892 -8.79596 -8.59749 -7.32739 -6.08351 -4.06598 3.26008 3.34504 3.35852 4.37588 4.39908 4.66513 5.25152 5.41692 5.51106 5.57120 5.60229 5.65380 5.74539 5.85569 5.90044 6.04579 6.09340 6.13798 6.20879 6.27081 6.33471 6.40635 6.42601 6.57530 6.66192 6.72677 6.83028 6.90081 7.04797 7.15456 7.21697 7.67477 7.72807 7.86963 7.91480 8.46593 8.94940 9.52893 11.03410 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.020917 B = 0.012638 C = 0.009720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.309170 B = 2215.068014 C = 2879.891073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.084 4.084 3 C -0.136 4.136 4 C 0.098 3.902 5 H 0.066 0.934 6 C -0.043 4.043 7 C -0.521 4.521 8 H 0.079 0.921 9 C 0.071 3.929 10 N -0.898 5.898 11 Si 0.874 3.126 12 H -0.278 1.278 13 H -0.288 1.288 14 H -0.265 1.265 15 N -0.515 5.515 16 C 0.004 3.996 17 C 0.070 3.930 18 O -0.387 6.387 19 C 0.067 3.933 20 C -0.005 4.005 21 H 0.062 0.938 22 H 0.038 0.962 23 H 0.056 0.944 24 H 0.061 0.939 25 H 0.065 0.935 26 H 0.042 0.958 27 H 0.038 0.962 28 H 0.031 0.969 29 H 0.011 0.989 30 H 0.263 0.737 31 H 0.081 0.919 32 H 0.067 0.933 33 H 0.044 0.956 34 H 0.086 0.914 35 H 0.043 0.957 36 H 0.085 0.915 37 H 0.082 0.918 38 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.756 10.834 -3.408 11.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.103 4.103 3 C -0.193 4.193 4 C -0.011 4.011 5 H 0.084 0.916 6 C -0.081 4.081 7 C -0.559 4.559 8 H 0.097 0.903 9 C -0.131 4.131 10 N -0.537 5.537 11 Si 0.702 3.298 12 H -0.204 1.204 13 H -0.215 1.215 14 H -0.190 1.190 15 N -0.240 5.240 16 C -0.124 4.124 17 C -0.007 4.007 18 O -0.305 6.305 19 C -0.011 4.011 20 C -0.133 4.133 21 H 0.081 0.919 22 H 0.057 0.943 23 H 0.074 0.926 24 H 0.079 0.921 25 H 0.084 0.916 26 H 0.062 0.938 27 H 0.057 0.943 28 H 0.049 0.951 29 H 0.029 0.971 30 H 0.073 0.927 31 H 0.099 0.901 32 H 0.086 0.914 33 H 0.063 0.937 34 H 0.104 0.896 35 H 0.062 0.938 36 H 0.103 0.897 37 H 0.100 0.900 38 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -3.879 11.076 -3.241 12.175 hybrid contribution -0.334 -1.417 -0.663 1.600 sum -4.213 9.659 -3.904 11.238 Atomic orbital electron populations 1.21992 0.96151 1.01752 1.00360 1.21123 0.95672 0.95914 0.97638 1.21719 0.99719 0.96523 1.01331 1.21608 0.97930 0.93112 0.88421 0.91618 1.20331 0.97635 0.92703 0.97473 1.21205 1.24483 0.96463 1.13744 0.90283 1.25004 0.95929 0.97307 0.94844 1.69900 1.43092 1.10791 1.29879 0.86865 0.82482 0.79615 0.80845 1.20414 1.21453 1.18998 1.62482 1.03573 1.53635 1.04274 1.23018 0.95122 1.02568 0.91685 1.22578 0.85580 0.95457 0.97131 1.87938 1.23726 1.81241 1.37620 1.22637 0.91443 0.99093 0.87880 1.23202 0.92635 1.00308 0.97177 0.91881 0.94315 0.92552 0.92075 0.91606 0.93848 0.94292 0.95139 0.97113 0.92726 0.90076 0.91410 0.93736 0.89552 0.93829 0.89655 0.90008 0.89860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.23 7.47 37.16 0.28 -1.95 16 2 C -0.08 -1.37 2.76 -90.62 -0.25 -1.62 16 3 C -0.14 -1.92 9.11 37.16 0.34 -1.59 16 4 C 0.10 1.88 1.82 -67.71 -0.12 1.76 16 5 H 0.07 1.33 7.63 -51.93 -0.40 0.94 16 6 C -0.04 -0.99 2.58 -27.88 -0.07 -1.06 16 7 C -0.52 -14.02 7.30 -34.44 -0.25 -14.27 16 8 H 0.08 2.28 5.44 -52.49 -0.29 2.00 16 9 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 10 N -0.90 -27.14 13.96 55.43 0.77 -26.36 16 11 Si 0.87 21.42 27.59 -169.99 -4.69 16.73 16 12 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 13 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 14 H -0.27 -6.20 6.38 56.52 0.36 -5.84 16 15 N -0.52 -9.45 3.57 -226.34 -0.81 -10.26 16 16 C 0.00 0.08 5.17 -3.71 -0.02 0.06 16 17 C 0.07 1.17 7.01 37.21 0.26 1.43 16 18 O -0.39 -7.34 10.83 -35.23 -0.38 -7.72 16 19 C 0.07 1.13 7.01 37.21 0.26 1.39 16 20 C -0.01 -0.10 3.71 -3.71 -0.01 -0.11 16 21 H 0.06 0.95 6.57 -51.93 -0.34 0.61 16 22 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 23 H 0.06 0.94 5.67 -51.93 -0.29 0.65 16 24 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 25 H 0.06 0.97 7.57 -51.93 -0.39 0.58 16 26 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 27 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.03 0.70 3.31 -51.93 -0.17 0.53 16 29 H 0.01 0.25 7.84 -51.93 -0.41 -0.16 16 30 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 31 H 0.08 1.86 5.03 -51.93 -0.26 1.60 16 32 H 0.07 1.16 8.01 -51.93 -0.42 0.74 16 33 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.09 1.31 8.14 -51.93 -0.42 0.88 16 35 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 37 H 0.08 1.44 4.26 -51.93 -0.22 1.22 16 38 H 0.08 1.92 5.42 -51.93 -0.28 1.64 16 LS Contribution 276.15 15.07 4.16 4.16 Total: -1.00 -29.07 276.15 -6.66 -35.73 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: -6.03 Total: 1.78 kcal Atomic # 6 Polarization: -14.37 SS G_CDS: 0.31 Total: -14.06 kcal Atomic # 7 Polarization: -36.59 SS G_CDS: -0.04 Total: -36.63 kcal Atomic # 8 Polarization: -7.34 SS G_CDS: -0.38 Total: -7.72 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.69 Total: 16.73 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -29.07 -6.66 -35.73 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259779477.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.025 kcal (2) G-P(sol) polarization free energy of solvation -29.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds