Wall clock time and date at job start Mon Mar 30 2020 03:28:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47324 * 2 1 4 4 C 1.52998 * 109.47530 * 120.00115 * 2 1 3 5 5 H 1.08999 * 109.47050 * 183.27190 * 4 2 1 6 6 C 1.53000 * 109.46796 * 63.27606 * 4 2 1 7 7 C 1.50701 * 109.47007 * 172.72165 * 6 4 2 8 8 H 1.08000 * 119.99995 * 354.28176 * 7 6 4 9 9 C 1.37877 * 120.00168 * 174.28115 * 7 6 4 10 10 N 1.31513 * 120.00600 * 179.97438 * 9 7 6 11 11 Si 1.86808 * 119.99879 * 359.97438 * 9 7 6 12 12 H 1.48504 * 109.46877 * 89.99636 * 11 9 7 13 13 H 1.48497 * 109.47042 * 209.99911 * 11 9 7 14 14 H 1.48497 * 109.47311 * 330.00161 * 11 9 7 15 15 N 1.46902 * 109.47185 * 303.27752 * 4 2 1 16 16 C 1.47013 * 110.99490 * 214.38463 * 15 4 2 17 17 C 1.53106 * 109.25503 * 177.60416 * 16 15 4 18 18 O 1.43020 * 109.25416 * 56.84513 * 17 16 15 19 19 C 1.43010 * 113.73935 * 301.32894 * 18 17 16 20 20 C 1.47005 * 111.00008 * 90.74516 * 15 4 2 21 21 H 1.09003 * 109.46723 * 309.08602 * 1 2 3 22 22 H 1.08991 * 109.47315 * 69.08500 * 1 2 3 23 23 H 1.08995 * 109.46541 * 189.09006 * 1 2 3 24 24 H 1.09003 * 109.47178 * 240.00394 * 2 1 3 25 25 H 1.09000 * 109.47032 * 64.80582 * 3 2 1 26 26 H 1.08995 * 109.47527 * 184.80754 * 3 2 1 27 27 H 1.09003 * 109.47131 * 304.81285 * 3 2 1 28 28 H 1.09005 * 109.46802 * 292.71665 * 6 4 2 29 29 H 1.08999 * 109.47664 * 52.71629 * 6 4 2 30 30 H 0.96994 * 120.00432 * 179.97438 * 10 9 7 31 31 H 1.09001 * 109.50847 * 297.53569 * 16 15 4 32 32 H 1.08997 * 109.50806 * 57.67325 * 16 15 4 33 33 H 1.08998 * 109.50271 * 296.91447 * 17 16 15 34 34 H 1.08993 * 109.50712 * 176.77660 * 17 16 15 35 35 H 1.08997 * 109.51057 * 298.73640 * 19 18 17 36 36 H 1.09002 * 109.53917 * 178.63142 * 19 18 17 37 37 H 1.08995 * 109.51256 * 302.32892 * 20 15 4 38 38 H 1.08997 * 109.50731 * 62.46019 * 20 15 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 1 3.1285 -0.6707 1.2789 6 6 1.5986 -2.1856 1.2086 7 6 2.2473 -2.9375 2.3420 8 1 2.9788 -2.4467 2.9669 9 6 1.9071 -4.2520 2.5814 10 7 2.4736 -4.9084 3.5702 11 14 0.6413 -5.1008 1.5010 12 1 1.3249 -5.7465 0.3516 13 1 -0.0746 -6.1320 2.2942 14 1 -0.3323 -4.0985 0.9984 15 7 1.4869 -0.0760 2.4474 16 6 2.4509 -0.1106 3.5568 17 6 1.8587 0.6230 4.7632 18 8 0.6086 0.0228 5.1131 19 6 -0.3541 0.0398 4.0557 20 6 0.2156 -0.6997 2.8421 21 1 -0.3633 0.6480 0.7977 22 1 -0.3633 0.3668 -0.9599 23 1 -0.3632 -1.0147 0.1624 24 1 1.8934 -0.5138 -0.8900 25 1 1.7488 1.9308 0.9299 26 1 3.1266 1.4437 -0.0861 27 1 1.6081 1.9806 -0.8438 28 1 0.5146 -2.2411 1.3091 29 1 1.8985 -2.6294 0.2593 30 1 2.2340 -5.8331 3.7388 31 1 2.6585 -1.1461 3.8265 32 1 3.3755 0.3790 3.2511 33 1 1.7010 1.6714 4.5101 34 1 2.5457 0.5507 5.6063 35 1 -0.5762 1.0712 3.7821 36 1 -1.2679 -0.4538 4.3866 37 1 -0.4915 -0.6402 2.0148 38 1 0.3875 -1.7446 3.1004 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259779477.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:27 Heat of formation + Delta-G solvation = -60.475310 kcal Electronic energy + Delta-G solvation = -17548.801804 eV Core-core repulsion = 15004.610191 eV Total energy + Delta-G solvation = -2544.191613 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.93782 -38.34800 -34.96357 -34.37995 -32.09451 -31.44558 -28.48830 -27.80789 -25.65930 -24.83190 -22.80711 -21.18190 -20.18315 -18.92657 -17.32932 -16.86682 -16.38501 -16.16375 -15.98517 -15.73155 -15.39297 -14.76374 -14.55953 -13.93958 -13.86520 -13.42818 -13.16798 -13.05996 -12.81294 -12.49674 -12.45643 -12.07088 -11.90455 -11.84356 -11.68117 -11.51354 -11.22485 -11.12773 -10.98738 -10.76580 -10.29719 -8.96245 -8.26351 -6.28002 1.30062 1.31853 1.41705 2.33090 2.98720 3.05611 3.24212 4.01580 4.16580 4.18635 4.30610 4.34872 4.36958 4.48051 4.54797 4.68400 4.76522 4.80008 4.82472 4.95664 4.98868 5.02696 5.13401 5.18339 5.19756 5.21453 5.37129 5.42428 5.48009 5.59060 5.69513 5.72092 6.26226 6.29073 6.32981 6.35709 6.78734 7.34009 8.88053 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.020917 B = 0.012638 C = 0.009720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.309170 B = 2215.068014 C = 2879.891073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.082 4.082 3 C -0.127 4.127 4 C 0.099 3.901 5 H 0.049 0.951 6 C -0.038 4.038 7 C -0.513 4.513 8 H 0.047 0.953 9 C 0.009 3.991 10 N -0.949 5.949 11 Si 0.936 3.064 12 H -0.272 1.272 13 H -0.290 1.290 14 H -0.245 1.245 15 N -0.497 5.497 16 C 0.006 3.994 17 C 0.072 3.928 18 O -0.411 6.411 19 C 0.067 3.933 20 C -0.003 4.003 21 H 0.067 0.933 22 H 0.063 0.937 23 H 0.039 0.961 24 H 0.063 0.937 25 H 0.061 0.939 26 H 0.043 0.957 27 H 0.060 0.940 28 H 0.035 0.965 29 H 0.008 0.992 30 H 0.262 0.738 31 H 0.030 0.970 32 H 0.081 0.919 33 H 0.072 0.928 34 H 0.098 0.902 35 H 0.071 0.929 36 H 0.099 0.901 37 H 0.099 0.901 38 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.326 12.923 -5.017 14.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.101 4.101 3 C -0.185 4.185 4 C -0.009 4.009 5 H 0.068 0.932 6 C -0.076 4.076 7 C -0.551 4.551 8 H 0.065 0.935 9 C -0.188 4.188 10 N -0.591 5.591 11 Si 0.760 3.240 12 H -0.198 1.198 13 H -0.216 1.216 14 H -0.168 1.168 15 N -0.221 5.221 16 C -0.123 4.123 17 C -0.004 4.004 18 O -0.330 6.330 19 C -0.010 4.010 20 C -0.131 4.131 21 H 0.085 0.915 22 H 0.082 0.918 23 H 0.058 0.942 24 H 0.081 0.919 25 H 0.080 0.920 26 H 0.062 0.938 27 H 0.079 0.921 28 H 0.053 0.947 29 H 0.027 0.973 30 H 0.071 0.929 31 H 0.048 0.952 32 H 0.100 0.900 33 H 0.090 0.910 34 H 0.116 0.884 35 H 0.089 0.911 36 H 0.117 0.883 37 H 0.117 0.883 38 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -5.452 13.190 -4.867 15.079 hybrid contribution 0.231 -2.023 -0.128 2.040 sum -5.221 11.167 -4.995 13.300 Atomic orbital electron populations 1.21943 0.95054 1.00916 1.01963 1.21101 0.96574 0.96943 0.95505 1.21634 0.99873 0.94883 1.02084 1.21595 0.97198 0.91530 0.90612 0.93243 1.20288 0.97377 0.94682 0.95273 1.21511 1.23121 0.96498 1.13928 0.93509 1.25863 0.98267 0.98356 0.96290 1.70057 1.45504 1.11177 1.32333 0.85874 0.80338 0.78751 0.79010 1.19777 1.21578 1.16848 1.62620 1.03275 1.52466 1.03739 1.22974 0.96270 1.00046 0.92971 1.22675 0.85029 0.96224 0.96504 1.87911 1.24660 1.81788 1.38684 1.22768 0.91295 1.00476 0.86470 1.23174 0.93218 0.97861 0.98872 0.91452 0.91847 0.94246 0.91896 0.91993 0.93781 0.92061 0.94693 0.97335 0.92907 0.95154 0.90049 0.90993 0.88398 0.91088 0.88292 0.88307 0.94682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.85 7.47 71.98 0.54 -3.31 16 2 C -0.08 -2.45 2.76 -10.79 -0.03 -2.48 16 3 C -0.13 -3.18 9.11 71.98 0.66 -2.52 16 4 C 0.10 3.75 1.82 44.91 0.08 3.83 16 5 H 0.05 2.01 7.63 -2.39 -0.02 2.00 16 6 C -0.04 -1.73 2.58 29.85 0.08 -1.65 16 7 C -0.51 -28.55 7.30 25.60 0.19 -28.36 16 8 H 0.05 2.87 5.44 -2.91 -0.02 2.86 16 9 C 0.01 0.51 5.47 84.65 0.46 0.98 16 10 N -0.95 -59.84 13.96 21.45 0.30 -59.54 16 11 Si 0.94 44.61 27.59 68.60 1.89 46.50 16 12 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 13 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 14 H -0.24 -10.74 6.38 99.48 0.63 -10.11 16 15 N -0.50 -17.73 3.57 -869.99 -3.11 -20.83 16 16 C 0.01 0.22 5.17 86.32 0.45 0.67 16 17 C 0.07 2.32 7.01 72.02 0.50 2.83 16 18 O -0.41 -15.17 10.83 -148.98 -1.61 -16.78 16 19 C 0.07 2.12 7.01 72.02 0.50 2.62 16 20 C 0.00 -0.11 3.71 86.32 0.32 0.21 16 21 H 0.07 1.77 6.57 -2.39 -0.02 1.75 16 22 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 23 H 0.04 1.20 5.67 -2.39 -0.01 1.18 16 24 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 25 H 0.06 1.60 7.57 -2.39 -0.02 1.59 16 26 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 27 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.03 1.57 3.31 -2.38 -0.01 1.56 16 29 H 0.01 0.38 7.84 -2.39 -0.02 0.37 16 30 H 0.26 15.62 8.31 -92.71 -0.77 14.85 16 31 H 0.03 1.47 5.03 -2.39 -0.01 1.46 16 32 H 0.08 2.77 8.01 -2.39 -0.02 2.75 16 33 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.10 2.87 8.14 -2.39 -0.02 2.85 16 35 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.10 2.84 8.14 -2.39 -0.02 2.82 16 37 H 0.10 3.26 4.26 -2.39 -0.01 3.25 16 38 H 0.03 1.64 5.42 -2.39 -0.01 1.63 16 Total: -1.00 -64.86 276.15 2.18 -62.68 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: 0.96 Total: 15.17 kcal Atomic # 6 Polarization: -30.94 SS G_CDS: 3.75 Total: -27.19 kcal Atomic # 7 Polarization: -77.57 SS G_CDS: -2.81 Total: -80.38 kcal Atomic # 8 Polarization: -15.17 SS G_CDS: -1.61 Total: -16.78 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 1.89 Total: 46.50 kcal Total: -64.86 2.18 -62.68 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259779477.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.201 kcal (2) G-P(sol) polarization free energy of solvation -64.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds