Wall clock time and date at job start Mon Mar 30 2020 02:56:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47726 * 2 1 4 4 C 1.53002 * 109.47250 * 120.00342 * 2 1 3 5 5 C 1.53001 * 109.47444 * 175.88990 * 4 2 1 6 6 C 1.50698 * 109.47121 * 55.88582 * 4 2 1 7 7 H 1.07995 * 120.00321 * 240.00199 * 6 4 2 8 8 C 1.37881 * 119.99727 * 60.00478 * 6 4 2 9 9 N 1.31509 * 119.99898 * 359.97438 * 8 6 4 10 10 Si 1.86801 * 119.99834 * 179.97438 * 8 6 4 11 11 H 1.48506 * 109.47230 * 359.97438 * 10 8 6 12 12 H 1.48498 * 109.46852 * 119.99855 * 10 8 6 13 13 H 1.48497 * 109.47048 * 239.99825 * 10 8 6 14 14 N 1.46901 * 109.46888 * 295.88774 * 4 2 1 15 15 C 1.47011 * 110.99904 * 28.69435 * 14 4 2 16 16 C 1.53094 * 109.25837 * 177.60740 * 15 14 4 17 17 O 1.43017 * 109.26105 * 56.84974 * 16 15 14 18 18 C 1.43018 * 113.73335 * 301.33036 * 17 16 15 19 19 C 1.47017 * 110.99935 * 265.05823 * 14 4 2 20 20 H 1.08999 * 109.46262 * 341.02397 * 1 2 3 21 21 H 1.08993 * 109.47256 * 101.01822 * 1 2 3 22 22 H 1.08991 * 109.46896 * 221.02547 * 1 2 3 23 23 H 1.09004 * 109.47190 * 239.99908 * 2 1 3 24 24 H 1.08995 * 109.47042 * 256.78000 * 3 2 1 25 25 H 1.09005 * 109.46893 * 16.77484 * 3 2 1 26 26 H 1.08998 * 109.47559 * 136.77723 * 3 2 1 27 27 H 1.08995 * 109.47084 * 179.97438 * 5 4 2 28 28 H 1.09000 * 109.47137 * 300.00259 * 5 4 2 29 29 H 1.09002 * 109.47220 * 59.99369 * 5 4 2 30 30 H 0.97010 * 119.99928 * 180.02562 * 9 8 6 31 31 H 1.08999 * 109.51091 * 57.67244 * 15 14 4 32 32 H 1.08999 * 109.54273 * 297.56350 * 15 14 4 33 33 H 1.09004 * 109.51168 * 176.77933 * 16 15 14 34 34 H 1.09000 * 109.50722 * 296.91489 * 16 15 14 35 35 H 1.09002 * 109.50732 * 298.73309 * 18 17 16 36 36 H 1.09005 * 109.54093 * 178.62426 * 18 17 16 37 37 H 1.08995 * 109.50947 * 302.32326 * 19 14 4 38 38 H 1.08994 * 109.50728 * 62.46072 * 19 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5665 -0.8115 1.1986 6 6 1.4562 -2.1097 1.3012 7 1 0.8442 -2.4071 2.1397 8 6 1.7036 -3.0002 0.2780 9 7 2.4485 -2.6379 -0.7434 10 14 0.9805 -4.7214 0.3427 11 1 0.1865 -4.8783 1.5878 12 1 0.1018 -4.9337 -0.8354 13 1 2.0789 -5.7206 0.3275 14 7 1.6331 0.0261 2.4466 15 6 0.3847 0.7647 2.2076 16 6 -0.0337 1.4793 3.4953 17 8 1.0279 2.3354 3.9260 18 6 2.2587 1.6487 4.1687 19 6 2.7004 0.9359 2.8878 20 1 -0.3632 0.9719 0.3342 21 1 -0.3633 -0.1964 -1.0086 22 1 -0.3633 -0.7752 0.6745 23 1 1.8933 -0.5139 -0.8900 24 1 2.3828 1.7066 -1.0004 25 1 1.2336 2.1131 0.2966 26 1 2.8673 1.5354 0.7038 27 1 3.9298 -1.3250 2.0888 28 1 3.8685 -1.3660 0.3101 29 1 3.9888 0.1927 1.1610 30 1 2.6222 -3.2643 -1.4634 31 1 -0.3983 0.0686 1.9069 32 1 0.5413 1.4996 1.4180 33 1 -0.9275 2.0742 3.3076 34 1 -0.2429 0.7412 4.2696 35 1 2.1161 0.9155 4.9626 36 1 3.0233 2.3656 4.4683 37 1 3.6078 0.3646 3.0835 38 1 2.8947 1.6735 2.1093 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260555784.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:44 Heat of formation + Delta-G solvation = 16.734367 kcal Electronic energy + Delta-G solvation = -18004.367197 eV Core-core repulsion = 15463.523647 eV Total energy + Delta-G solvation = -2540.843550 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.95678 -36.98572 -32.78523 -32.28379 -30.68793 -29.04274 -27.05696 -25.57748 -24.64201 -22.66509 -21.96065 -19.19570 -18.65521 -16.45017 -15.64132 -15.31049 -14.81277 -14.64019 -14.43114 -14.07448 -13.37130 -13.02467 -12.60423 -12.15010 -11.73822 -11.49784 -11.20378 -11.09736 -10.89247 -10.65056 -10.55291 -10.26538 -10.25815 -10.12521 -10.00883 -9.79992 -9.52744 -9.16421 -8.84971 -8.65387 -8.30761 -6.89843 -5.98319 -4.02118 3.28981 3.37874 3.42366 4.33122 4.41140 4.98389 5.27930 5.56114 5.64149 5.72561 5.76440 5.82853 6.01320 6.08084 6.13700 6.16218 6.25998 6.45302 6.50070 6.61322 6.65106 6.75477 6.78341 6.80663 6.99777 7.02341 7.17945 7.42671 7.51904 7.60401 7.66365 7.82181 7.90576 8.32378 8.45113 8.61994 9.03200 9.62562 11.04992 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.033483 B = 0.010299 C = 0.010006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.033638 B = 2717.970119 C = 2797.583318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.113 4.113 3 C -0.167 4.167 4 C 0.242 3.758 5 C -0.142 4.142 6 C -0.480 4.480 7 H 0.061 0.939 8 C 0.060 3.940 9 N -0.891 5.891 10 Si 0.892 3.108 11 H -0.274 1.274 12 H -0.286 1.286 13 H -0.286 1.286 14 N -0.519 5.519 15 C -0.016 4.016 16 C 0.057 3.943 17 O -0.397 6.397 18 C 0.064 3.936 19 C 0.002 3.998 20 H 0.040 0.960 21 H 0.021 0.979 22 H 0.078 0.922 23 H 0.103 0.897 24 H 0.034 0.966 25 H 0.046 0.954 26 H 0.062 0.938 27 H 0.032 0.968 28 H 0.087 0.913 29 H 0.015 0.985 30 H 0.258 0.742 31 H 0.102 0.898 32 H 0.067 0.933 33 H 0.083 0.917 34 H 0.048 0.952 35 H 0.050 0.950 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.361 6.458 3.992 7.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.133 4.133 3 C -0.224 4.224 4 C 0.154 3.846 5 C -0.200 4.200 6 C -0.519 4.519 7 H 0.079 0.921 8 C -0.140 4.140 9 N -0.530 5.530 10 Si 0.720 3.280 11 H -0.198 1.198 12 H -0.213 1.213 13 H -0.212 1.212 14 N -0.244 5.244 15 C -0.143 4.143 16 C -0.020 4.020 17 O -0.315 6.315 18 C -0.013 4.013 19 C -0.126 4.126 20 H 0.059 0.941 21 H 0.040 0.960 22 H 0.096 0.904 23 H 0.121 0.879 24 H 0.053 0.947 25 H 0.064 0.936 26 H 0.080 0.920 27 H 0.051 0.949 28 H 0.106 0.894 29 H 0.034 0.966 30 H 0.068 0.932 31 H 0.120 0.880 32 H 0.085 0.915 33 H 0.101 0.899 34 H 0.066 0.934 35 H 0.068 0.932 36 H 0.101 0.899 37 H 0.099 0.901 38 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -1.399 6.222 4.232 7.654 hybrid contribution -0.113 -0.736 -0.783 1.081 sum -1.512 5.486 3.448 6.654 Atomic orbital electron populations 1.22685 0.97193 1.00187 0.99839 1.21674 0.94532 0.92788 1.04330 1.22688 1.00745 0.98686 1.00248 1.18822 0.91694 0.91574 0.82491 1.22144 0.97485 0.97759 1.02628 1.21055 1.30045 0.95577 1.05174 0.92052 1.24863 0.95393 0.98269 0.95478 1.69810 1.38585 1.35027 1.09621 0.86533 0.78880 0.84716 0.77840 1.19827 1.21280 1.21249 1.62591 1.01601 1.23399 1.36835 1.24182 0.95914 0.98177 0.96065 1.22838 0.89330 0.93170 0.96653 1.87857 1.20411 1.35395 1.87887 1.22669 0.85946 0.95631 0.97087 1.23128 0.97106 0.95965 0.96410 0.94135 0.96016 0.90401 0.87867 0.94704 0.93554 0.91953 0.94891 0.89420 0.96637 0.93197 0.88018 0.91519 0.89920 0.93359 0.93171 0.89901 0.90056 0.93572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.95 7.50 37.16 0.28 -2.67 16 2 C -0.11 -2.51 1.98 -90.62 -0.18 -2.69 16 3 C -0.17 -3.27 8.04 37.16 0.30 -2.97 16 4 C 0.24 5.59 0.39 -132.75 -0.05 5.53 16 5 C -0.14 -3.28 6.75 37.16 0.25 -3.03 16 6 C -0.48 -12.40 6.56 -34.44 -0.23 -12.63 16 7 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 8 C 0.06 1.58 5.15 -17.82 -0.09 1.48 16 9 N -0.89 -23.72 9.40 55.43 0.52 -23.19 16 10 Si 0.89 20.81 29.54 -169.99 -5.02 15.79 16 11 H -0.27 -6.39 7.11 56.52 0.40 -5.98 16 12 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 13 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 14 N -0.52 -10.82 4.51 -220.00 -0.99 -11.81 16 15 C -0.02 -0.30 3.44 -3.71 -0.01 -0.32 16 16 C 0.06 0.95 7.01 37.21 0.26 1.21 16 17 O -0.40 -6.98 10.83 -35.23 -0.38 -7.36 16 18 C 0.06 1.04 7.01 37.21 0.26 1.30 16 19 C 0.00 0.04 4.17 -3.71 -0.02 0.02 16 20 H 0.04 0.74 4.99 -51.93 -0.26 0.48 16 21 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 22 H 0.08 1.72 4.73 -51.93 -0.25 1.47 16 23 H 0.10 2.63 6.19 -51.93 -0.32 2.31 16 24 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 25 H 0.05 0.85 5.45 -51.93 -0.28 0.57 16 26 H 0.06 1.22 3.06 -51.93 -0.16 1.06 16 27 H 0.03 0.75 7.61 -51.93 -0.40 0.36 16 28 H 0.09 2.23 6.07 -51.93 -0.32 1.92 16 29 H 0.01 0.31 5.20 -51.93 -0.27 0.04 16 30 H 0.26 6.67 8.31 -40.82 -0.34 6.33 16 31 H 0.10 1.99 4.92 -51.93 -0.26 1.73 16 32 H 0.07 1.27 2.66 -51.93 -0.14 1.14 16 33 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 37 H 0.08 1.51 6.16 -51.93 -0.32 1.19 16 38 H 0.05 0.87 4.66 -51.93 -0.24 0.63 16 LS Contribution 260.23 15.07 3.92 3.92 Total: -1.00 -26.59 260.23 -6.47 -33.05 By element: Atomic # 1 Polarization: 9.64 SS G_CDS: -5.28 Total: 4.36 kcal Atomic # 6 Polarization: -15.53 SS G_CDS: 0.77 Total: -14.75 kcal Atomic # 7 Polarization: -34.53 SS G_CDS: -0.47 Total: -35.01 kcal Atomic # 8 Polarization: -6.98 SS G_CDS: -0.38 Total: -7.36 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -26.59 -6.47 -33.05 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260555784.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.789 kcal (2) G-P(sol) polarization free energy of solvation -26.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.055 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds