Wall clock time and date at job start Mon Mar 30 2020 02:56:44
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 C 1.53000 * 109.47726 * 2 1
4 4 C 1.53002 * 109.47250 * 120.00342 * 2 1 3
5 5 C 1.53001 * 109.47444 * 175.88990 * 4 2 1
6 6 C 1.50698 * 109.47121 * 55.88582 * 4 2 1
7 7 H 1.07995 * 120.00321 * 240.00199 * 6 4 2
8 8 C 1.37881 * 119.99727 * 60.00478 * 6 4 2
9 9 N 1.31509 * 119.99898 * 359.97438 * 8 6 4
10 10 Si 1.86801 * 119.99834 * 179.97438 * 8 6 4
11 11 H 1.48506 * 109.47230 * 359.97438 * 10 8 6
12 12 H 1.48498 * 109.46852 * 119.99855 * 10 8 6
13 13 H 1.48497 * 109.47048 * 239.99825 * 10 8 6
14 14 N 1.46901 * 109.46888 * 295.88774 * 4 2 1
15 15 C 1.47011 * 110.99904 * 28.69435 * 14 4 2
16 16 C 1.53094 * 109.25837 * 177.60740 * 15 14 4
17 17 O 1.43017 * 109.26105 * 56.84974 * 16 15 14
18 18 C 1.43018 * 113.73335 * 301.33036 * 17 16 15
19 19 C 1.47017 * 110.99935 * 265.05823 * 14 4 2
20 20 H 1.08999 * 109.46262 * 341.02397 * 1 2 3
21 21 H 1.08993 * 109.47256 * 101.01822 * 1 2 3
22 22 H 1.08991 * 109.46896 * 221.02547 * 1 2 3
23 23 H 1.09004 * 109.47190 * 239.99908 * 2 1 3
24 24 H 1.08995 * 109.47042 * 256.78000 * 3 2 1
25 25 H 1.09005 * 109.46893 * 16.77484 * 3 2 1
26 26 H 1.08998 * 109.47559 * 136.77723 * 3 2 1
27 27 H 1.08995 * 109.47084 * 179.97438 * 5 4 2
28 28 H 1.09000 * 109.47137 * 300.00259 * 5 4 2
29 29 H 1.09002 * 109.47220 * 59.99369 * 5 4 2
30 30 H 0.97010 * 119.99928 * 180.02562 * 9 8 6
31 31 H 1.08999 * 109.51091 * 57.67244 * 15 14 4
32 32 H 1.08999 * 109.54273 * 297.56350 * 15 14 4
33 33 H 1.09004 * 109.51168 * 176.77933 * 16 15 14
34 34 H 1.09000 * 109.50722 * 296.91489 * 16 15 14
35 35 H 1.09002 * 109.50732 * 298.73309 * 18 17 16
36 36 H 1.09005 * 109.54093 * 178.62426 * 18 17 16
37 37 H 1.08995 * 109.50947 * 302.32326 * 19 14 4
38 38 H 1.08994 * 109.50728 * 62.46072 * 19 14 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0401 1.4424 0.0000
4 6 2.0400 -0.7213 1.2492
5 6 3.5665 -0.8115 1.1986
6 6 1.4562 -2.1097 1.3012
7 1 0.8442 -2.4071 2.1397
8 6 1.7036 -3.0002 0.2780
9 7 2.4485 -2.6379 -0.7434
10 14 0.9805 -4.7214 0.3427
11 1 0.1865 -4.8783 1.5878
12 1 0.1018 -4.9337 -0.8354
13 1 2.0789 -5.7206 0.3275
14 7 1.6331 0.0261 2.4466
15 6 0.3847 0.7647 2.2076
16 6 -0.0337 1.4793 3.4953
17 8 1.0279 2.3354 3.9260
18 6 2.2587 1.6487 4.1687
19 6 2.7004 0.9359 2.8878
20 1 -0.3632 0.9719 0.3342
21 1 -0.3633 -0.1964 -1.0086
22 1 -0.3633 -0.7752 0.6745
23 1 1.8933 -0.5139 -0.8900
24 1 2.3828 1.7066 -1.0004
25 1 1.2336 2.1131 0.2966
26 1 2.8673 1.5354 0.7038
27 1 3.9298 -1.3250 2.0888
28 1 3.8685 -1.3660 0.3101
29 1 3.9888 0.1927 1.1610
30 1 2.6222 -3.2643 -1.4634
31 1 -0.3983 0.0686 1.9069
32 1 0.5413 1.4996 1.4180
33 1 -0.9275 2.0742 3.3076
34 1 -0.2429 0.7412 4.2696
35 1 2.1161 0.9155 4.9626
36 1 3.0233 2.3656 4.4683
37 1 3.6078 0.3646 3.0835
38 1 2.8947 1.6735 2.1093
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000260555784.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:56:44
Heat of formation + Delta-G solvation = 16.734367 kcal
Electronic energy + Delta-G solvation = -18004.367197 eV
Core-core repulsion = 15463.523647 eV
Total energy + Delta-G solvation = -2540.843550 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 227.163 amu
Computer time = 0.25 seconds
Orbital eigenvalues (eV)
-39.95678 -36.98572 -32.78523 -32.28379 -30.68793 -29.04274 -27.05696 -25.57748
-24.64201 -22.66509 -21.96065 -19.19570 -18.65521 -16.45017 -15.64132 -15.31049
-14.81277 -14.64019 -14.43114 -14.07448 -13.37130 -13.02467 -12.60423 -12.15010
-11.73822 -11.49784 -11.20378 -11.09736 -10.89247 -10.65056 -10.55291 -10.26538
-10.25815 -10.12521 -10.00883 -9.79992 -9.52744 -9.16421 -8.84971 -8.65387
-8.30761 -6.89843 -5.98319 -4.02118 3.28981 3.37874 3.42366 4.33122
4.41140 4.98389 5.27930 5.56114 5.64149 5.72561 5.76440 5.82853
6.01320 6.08084 6.13700 6.16218 6.25998 6.45302 6.50070 6.61322
6.65106 6.75477 6.78341 6.80663 6.99777 7.02341 7.17945 7.42671
7.51904 7.60401 7.66365 7.82181 7.90576 8.32378 8.45113 8.61994
9.03200 9.62562 11.04992
Molecular weight = 227.16amu
Principal moments of inertia in cm(-1)
A = 0.033483 B = 0.010299 C = 0.010006
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 836.033638 B = 2717.970119 C = 2797.583318
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.143 4.143
2 C -0.113 4.113
3 C -0.167 4.167
4 C 0.242 3.758
5 C -0.142 4.142
6 C -0.480 4.480
7 H 0.061 0.939
8 C 0.060 3.940
9 N -0.891 5.891
10 Si 0.892 3.108
11 H -0.274 1.274
12 H -0.286 1.286
13 H -0.286 1.286
14 N -0.519 5.519
15 C -0.016 4.016
16 C 0.057 3.943
17 O -0.397 6.397
18 C 0.064 3.936
19 C 0.002 3.998
20 H 0.040 0.960
21 H 0.021 0.979
22 H 0.078 0.922
23 H 0.103 0.897
24 H 0.034 0.966
25 H 0.046 0.954
26 H 0.062 0.938
27 H 0.032 0.968
28 H 0.087 0.913
29 H 0.015 0.985
30 H 0.258 0.742
31 H 0.102 0.898
32 H 0.067 0.933
33 H 0.083 0.917
34 H 0.048 0.952
35 H 0.050 0.950
36 H 0.083 0.917
37 H 0.081 0.919
38 H 0.047 0.953
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.361 6.458 3.992 7.713
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.199 4.199
2 C -0.133 4.133
3 C -0.224 4.224
4 C 0.154 3.846
5 C -0.200 4.200
6 C -0.519 4.519
7 H 0.079 0.921
8 C -0.140 4.140
9 N -0.530 5.530
10 Si 0.720 3.280
11 H -0.198 1.198
12 H -0.213 1.213
13 H -0.212 1.212
14 N -0.244 5.244
15 C -0.143 4.143
16 C -0.020 4.020
17 O -0.315 6.315
18 C -0.013 4.013
19 C -0.126 4.126
20 H 0.059 0.941
21 H 0.040 0.960
22 H 0.096 0.904
23 H 0.121 0.879
24 H 0.053 0.947
25 H 0.064 0.936
26 H 0.080 0.920
27 H 0.051 0.949
28 H 0.106 0.894
29 H 0.034 0.966
30 H 0.068 0.932
31 H 0.120 0.880
32 H 0.085 0.915
33 H 0.101 0.899
34 H 0.066 0.934
35 H 0.068 0.932
36 H 0.101 0.899
37 H 0.099 0.901
38 H 0.064 0.936
Dipole moment (debyes) X Y Z Total
from point charges -1.399 6.222 4.232 7.654
hybrid contribution -0.113 -0.736 -0.783 1.081
sum -1.512 5.486 3.448 6.654
Atomic orbital electron populations
1.22685 0.97193 1.00187 0.99839 1.21674 0.94532 0.92788 1.04330
1.22688 1.00745 0.98686 1.00248 1.18822 0.91694 0.91574 0.82491
1.22144 0.97485 0.97759 1.02628 1.21055 1.30045 0.95577 1.05174
0.92052 1.24863 0.95393 0.98269 0.95478 1.69810 1.38585 1.35027
1.09621 0.86533 0.78880 0.84716 0.77840 1.19827 1.21280 1.21249
1.62591 1.01601 1.23399 1.36835 1.24182 0.95914 0.98177 0.96065
1.22838 0.89330 0.93170 0.96653 1.87857 1.20411 1.35395 1.87887
1.22669 0.85946 0.95631 0.97087 1.23128 0.97106 0.95965 0.96410
0.94135 0.96016 0.90401 0.87867 0.94704 0.93554 0.91953 0.94891
0.89420 0.96637 0.93197 0.88018 0.91519 0.89920 0.93359 0.93171
0.89901 0.90056 0.93572
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.95 7.50 37.16 0.28 -2.67 16
2 C -0.11 -2.51 1.98 -90.62 -0.18 -2.69 16
3 C -0.17 -3.27 8.04 37.16 0.30 -2.97 16
4 C 0.24 5.59 0.39 -132.75 -0.05 5.53 16
5 C -0.14 -3.28 6.75 37.16 0.25 -3.03 16
6 C -0.48 -12.40 6.56 -34.44 -0.23 -12.63 16
7 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16
8 C 0.06 1.58 5.15 -17.82 -0.09 1.48 16
9 N -0.89 -23.72 9.40 55.43 0.52 -23.19 16
10 Si 0.89 20.81 29.54 -169.99 -5.02 15.79 16
11 H -0.27 -6.39 7.11 56.52 0.40 -5.98 16
12 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16
13 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16
14 N -0.52 -10.82 4.51 -220.00 -0.99 -11.81 16
15 C -0.02 -0.30 3.44 -3.71 -0.01 -0.32 16
16 C 0.06 0.95 7.01 37.21 0.26 1.21 16
17 O -0.40 -6.98 10.83 -35.23 -0.38 -7.36 16
18 C 0.06 1.04 7.01 37.21 0.26 1.30 16
19 C 0.00 0.04 4.17 -3.71 -0.02 0.02 16
20 H 0.04 0.74 4.99 -51.93 -0.26 0.48 16
21 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16
22 H 0.08 1.72 4.73 -51.93 -0.25 1.47 16
23 H 0.10 2.63 6.19 -51.93 -0.32 2.31 16
24 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16
25 H 0.05 0.85 5.45 -51.93 -0.28 0.57 16
26 H 0.06 1.22 3.06 -51.93 -0.16 1.06 16
27 H 0.03 0.75 7.61 -51.93 -0.40 0.36 16
28 H 0.09 2.23 6.07 -51.93 -0.32 1.92 16
29 H 0.01 0.31 5.20 -51.93 -0.27 0.04 16
30 H 0.26 6.67 8.31 -40.82 -0.34 6.33 16
31 H 0.10 1.99 4.92 -51.93 -0.26 1.73 16
32 H 0.07 1.27 2.66 -51.93 -0.14 1.14 16
33 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16
34 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16
35 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16
36 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16
37 H 0.08 1.51 6.16 -51.93 -0.32 1.19 16
38 H 0.05 0.87 4.66 -51.93 -0.24 0.63 16
LS Contribution 260.23 15.07 3.92 3.92
Total: -1.00 -26.59 260.23 -6.47 -33.05
By element:
Atomic # 1 Polarization: 9.64 SS G_CDS: -5.28 Total: 4.36 kcal
Atomic # 6 Polarization: -15.53 SS G_CDS: 0.77 Total: -14.75 kcal
Atomic # 7 Polarization: -34.53 SS G_CDS: -0.47 Total: -35.01 kcal
Atomic # 8 Polarization: -6.98 SS G_CDS: -0.38 Total: -7.36 kcal
Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal
Total LS contribution 3.92 Total: 3.92 kcal
Total: -26.59 -6.47 -33.05 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260555784.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 49.789 kcal
(2) G-P(sol) polarization free energy of solvation -26.589 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.199 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.465 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.055 kcal
(6) G-S(sol) free energy of system = (1) + (5) 16.734 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.25 seconds