Wall clock time and date at job start Mon Mar 30 2020 02:56:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47726 * 2 1 4 4 C 1.53002 * 109.47250 * 120.00342 * 2 1 3 5 5 C 1.53001 * 109.47444 * 175.88990 * 4 2 1 6 6 C 1.50698 * 109.47121 * 55.88582 * 4 2 1 7 7 H 1.07995 * 120.00321 * 240.00199 * 6 4 2 8 8 C 1.37881 * 119.99727 * 60.00478 * 6 4 2 9 9 N 1.31509 * 119.99898 * 359.97438 * 8 6 4 10 10 Si 1.86801 * 119.99834 * 179.97438 * 8 6 4 11 11 H 1.48506 * 109.47230 * 359.97438 * 10 8 6 12 12 H 1.48498 * 109.46852 * 119.99855 * 10 8 6 13 13 H 1.48497 * 109.47048 * 239.99825 * 10 8 6 14 14 N 1.46901 * 109.46888 * 295.88774 * 4 2 1 15 15 C 1.47011 * 110.99904 * 28.69435 * 14 4 2 16 16 C 1.53094 * 109.25837 * 177.60740 * 15 14 4 17 17 O 1.43017 * 109.26105 * 56.84974 * 16 15 14 18 18 C 1.43018 * 113.73335 * 301.33036 * 17 16 15 19 19 C 1.47017 * 110.99935 * 265.05823 * 14 4 2 20 20 H 1.08999 * 109.46262 * 341.02397 * 1 2 3 21 21 H 1.08993 * 109.47256 * 101.01822 * 1 2 3 22 22 H 1.08991 * 109.46896 * 221.02547 * 1 2 3 23 23 H 1.09004 * 109.47190 * 239.99908 * 2 1 3 24 24 H 1.08995 * 109.47042 * 256.78000 * 3 2 1 25 25 H 1.09005 * 109.46893 * 16.77484 * 3 2 1 26 26 H 1.08998 * 109.47559 * 136.77723 * 3 2 1 27 27 H 1.08995 * 109.47084 * 179.97438 * 5 4 2 28 28 H 1.09000 * 109.47137 * 300.00259 * 5 4 2 29 29 H 1.09002 * 109.47220 * 59.99369 * 5 4 2 30 30 H 0.97010 * 119.99928 * 180.02562 * 9 8 6 31 31 H 1.08999 * 109.51091 * 57.67244 * 15 14 4 32 32 H 1.08999 * 109.54273 * 297.56350 * 15 14 4 33 33 H 1.09004 * 109.51168 * 176.77933 * 16 15 14 34 34 H 1.09000 * 109.50722 * 296.91489 * 16 15 14 35 35 H 1.09002 * 109.50732 * 298.73309 * 18 17 16 36 36 H 1.09005 * 109.54093 * 178.62426 * 18 17 16 37 37 H 1.08995 * 109.50947 * 302.32326 * 19 14 4 38 38 H 1.08994 * 109.50728 * 62.46072 * 19 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5665 -0.8115 1.1986 6 6 1.4562 -2.1097 1.3012 7 1 0.8442 -2.4071 2.1397 8 6 1.7036 -3.0002 0.2780 9 7 2.4485 -2.6379 -0.7434 10 14 0.9805 -4.7214 0.3427 11 1 0.1865 -4.8783 1.5878 12 1 0.1018 -4.9337 -0.8354 13 1 2.0789 -5.7206 0.3275 14 7 1.6331 0.0261 2.4466 15 6 0.3847 0.7647 2.2076 16 6 -0.0337 1.4793 3.4953 17 8 1.0279 2.3354 3.9260 18 6 2.2587 1.6487 4.1687 19 6 2.7004 0.9359 2.8878 20 1 -0.3632 0.9719 0.3342 21 1 -0.3633 -0.1964 -1.0086 22 1 -0.3633 -0.7752 0.6745 23 1 1.8933 -0.5139 -0.8900 24 1 2.3828 1.7066 -1.0004 25 1 1.2336 2.1131 0.2966 26 1 2.8673 1.5354 0.7038 27 1 3.9298 -1.3250 2.0888 28 1 3.8685 -1.3660 0.3101 29 1 3.9888 0.1927 1.1610 30 1 2.6222 -3.2643 -1.4634 31 1 -0.3983 0.0686 1.9069 32 1 0.5413 1.4996 1.4180 33 1 -0.9275 2.0742 3.3076 34 1 -0.2429 0.7412 4.2696 35 1 2.1161 0.9155 4.9626 36 1 3.0233 2.3656 4.4683 37 1 3.6078 0.3646 3.0835 38 1 2.8947 1.6735 2.1093 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260555784.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:44 Heat of formation + Delta-G solvation = -0.573826 kcal Electronic energy + Delta-G solvation = -18005.117737 eV Core-core repulsion = 15463.523647 eV Total energy + Delta-G solvation = -2541.594090 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.53542 -38.45904 -34.65486 -33.88490 -32.25572 -30.70771 -28.71312 -27.14005 -26.50887 -24.12915 -23.61755 -20.74306 -20.38937 -18.26455 -17.02137 -16.97936 -16.43156 -16.30143 -15.88694 -15.70576 -14.99835 -14.71821 -14.17574 -13.80131 -13.42226 -13.14362 -12.91356 -12.70570 -12.66533 -12.42159 -12.25290 -12.06559 -11.92787 -11.86506 -11.66101 -11.35103 -11.11155 -10.84893 -10.60640 -10.29249 -10.17107 -8.52351 -7.97109 -6.05999 1.40543 1.45451 1.54237 2.47076 3.04820 3.26778 3.45161 4.15004 4.21534 4.29544 4.31662 4.39905 4.51552 4.59305 4.63384 4.82053 4.84940 4.86049 4.96826 5.00031 5.03739 5.07030 5.15137 5.21211 5.24613 5.40772 5.45105 5.67267 5.71736 5.86855 5.94129 5.99244 6.30050 6.52917 6.68827 6.84397 7.04834 7.61647 9.03403 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.033483 B = 0.010299 C = 0.010006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.033638 B = 2717.970119 C = 2797.583318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.112 4.112 3 C -0.159 4.159 4 C 0.239 3.761 5 C -0.131 4.131 6 C -0.488 4.488 7 H 0.044 0.956 8 C 0.023 3.977 9 N -0.906 5.906 10 Si 0.940 3.060 11 H -0.274 1.274 12 H -0.286 1.286 13 H -0.287 1.287 14 N -0.533 5.533 15 C -0.015 4.015 16 C 0.061 3.939 17 O -0.402 6.402 18 C 0.067 3.933 19 C 0.002 3.998 20 H 0.067 0.933 21 H 0.015 0.985 22 H 0.060 0.940 23 H 0.068 0.932 24 H 0.040 0.960 25 H 0.062 0.938 26 H 0.063 0.937 27 H 0.023 0.977 28 H 0.060 0.940 29 H 0.034 0.966 30 H 0.256 0.744 31 H 0.092 0.908 32 H 0.068 0.932 33 H 0.111 0.889 34 H 0.047 0.953 35 H 0.050 0.950 36 H 0.113 0.887 37 H 0.077 0.923 38 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.832 7.802 4.811 9.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.132 4.132 3 C -0.215 4.215 4 C 0.151 3.849 5 C -0.190 4.190 6 C -0.527 4.527 7 H 0.062 0.938 8 C -0.175 4.175 9 N -0.547 5.547 10 Si 0.768 3.232 11 H -0.199 1.199 12 H -0.212 1.212 13 H -0.213 1.213 14 N -0.258 5.258 15 C -0.142 4.142 16 C -0.016 4.016 17 O -0.321 6.321 18 C -0.010 4.010 19 C -0.126 4.126 20 H 0.086 0.914 21 H 0.034 0.966 22 H 0.079 0.921 23 H 0.086 0.914 24 H 0.059 0.941 25 H 0.080 0.920 26 H 0.081 0.919 27 H 0.042 0.958 28 H 0.079 0.921 29 H 0.053 0.947 30 H 0.065 0.935 31 H 0.110 0.890 32 H 0.086 0.914 33 H 0.129 0.871 34 H 0.065 0.935 35 H 0.068 0.932 36 H 0.131 0.869 37 H 0.095 0.905 38 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -1.872 7.573 5.061 9.299 hybrid contribution 0.042 -1.154 -1.012 1.535 sum -1.830 6.419 4.049 7.807 Atomic orbital electron populations 1.22607 0.96190 1.01107 0.99139 1.21539 0.95444 0.94068 1.02195 1.22574 1.01178 0.96961 1.00760 1.18697 0.91247 0.90955 0.83992 1.21997 0.97924 0.98277 1.00761 1.21224 1.29754 0.97310 1.04433 0.93777 1.25386 0.95899 1.00791 0.95452 1.69937 1.39284 1.35571 1.09873 0.85779 0.78139 0.81704 0.77575 1.19858 1.21185 1.21331 1.62478 1.03016 1.24738 1.35595 1.24150 0.94736 0.97815 0.97547 1.22881 0.90063 0.93424 0.95249 1.87861 1.20771 1.35717 1.87758 1.22747 0.86330 0.96244 0.95661 1.23166 0.96355 0.95557 0.97551 0.91431 0.96577 0.92087 0.91379 0.94112 0.91982 0.91876 0.95752 0.92119 0.94683 0.93481 0.89044 0.91429 0.87121 0.93509 0.93169 0.86930 0.90519 0.93515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.43 7.50 71.98 0.54 -4.89 16 2 C -0.11 -4.92 1.98 -10.79 -0.02 -4.94 16 3 C -0.16 -5.90 8.04 71.98 0.58 -5.32 16 4 C 0.24 11.01 0.39 2.78 0.00 11.01 16 5 C -0.13 -6.08 6.75 71.98 0.49 -5.59 16 6 C -0.49 -25.49 6.56 25.60 0.17 -25.32 16 7 H 0.04 2.40 7.81 -2.91 -0.02 2.38 16 8 C 0.02 1.23 5.15 84.66 0.44 1.66 16 9 N -0.91 -49.09 9.40 21.45 0.20 -48.88 16 10 Si 0.94 43.12 29.54 68.60 2.03 45.15 16 11 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 12 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 13 H -0.29 -13.12 7.11 99.48 0.71 -12.42 16 14 N -0.53 -21.56 4.51 -849.95 -3.84 -25.40 16 15 C -0.02 -0.55 3.44 86.31 0.30 -0.25 16 16 C 0.06 1.84 7.01 72.01 0.50 2.35 16 17 O -0.40 -12.77 10.83 -148.98 -1.61 -14.39 16 18 C 0.07 1.99 7.01 72.02 0.50 2.49 16 19 C 0.00 0.06 4.17 86.31 0.36 0.42 16 20 H 0.07 2.33 4.99 -2.39 -0.01 2.32 16 21 H 0.02 0.63 8.14 -2.39 -0.02 0.61 16 22 H 0.06 2.68 4.73 -2.39 -0.01 2.67 16 23 H 0.07 3.50 6.19 -2.38 -0.01 3.49 16 24 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 25 H 0.06 2.11 5.45 -2.38 -0.01 2.09 16 26 H 0.06 2.33 3.06 -2.39 -0.01 2.33 16 27 H 0.02 1.11 7.61 -2.39 -0.02 1.09 16 28 H 0.06 3.14 6.07 -2.39 -0.01 3.12 16 29 H 0.03 1.43 5.20 -2.39 -0.01 1.42 16 30 H 0.26 13.45 8.31 -92.70 -0.77 12.68 16 31 H 0.09 3.45 4.92 -2.39 -0.01 3.44 16 32 H 0.07 2.39 2.66 -2.39 -0.01 2.39 16 33 H 0.11 2.75 8.14 -2.38 -0.02 2.73 16 34 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.11 2.68 8.14 -2.38 -0.02 2.66 16 37 H 0.08 2.73 6.16 -2.39 -0.01 2.71 16 38 H 0.05 1.64 4.66 -2.39 -0.01 1.63 16 Total: -1.00 -55.96 260.23 1.69 -54.27 By element: Atomic # 1 Polarization: 16.58 SS G_CDS: 1.06 Total: 17.65 kcal Atomic # 6 Polarization: -32.24 SS G_CDS: 3.85 Total: -28.39 kcal Atomic # 7 Polarization: -70.65 SS G_CDS: -3.64 Total: -74.29 kcal Atomic # 8 Polarization: -12.77 SS G_CDS: -1.61 Total: -14.39 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.15 kcal Total: -55.96 1.69 -54.27 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260555784.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.695 kcal (2) G-P(sol) polarization free energy of solvation -55.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds