Wall clock time and date at job start Mon Mar 30 2020 02:48:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.39780 * 110.99950 * 2 1 4 4 C 1.54431 * 111.77078 * 170.87206 * 3 2 1 5 5 C 1.50755 * 109.02128 * 77.40208 * 4 3 2 6 6 C 1.52999 * 108.85933 * 27.79420 * 5 4 3 7 7 C 1.53008 * 108.85131 * 146.28234 * 5 4 3 8 8 C 1.54164 * 112.61310 * 266.98179 * 5 4 3 9 9 C 1.53821 * 111.97170 * 41.51886 * 8 5 4 10 10 H 1.09001 * 109.04822 * 280.41103 * 9 8 5 11 11 O 1.42898 * 109.05213 * 161.51018 * 9 8 5 12 12 C 1.47637 * 110.99764 * 231.10181 * 2 1 3 13 13 H 1.09005 * 109.74530 * 89.96725 * 12 2 1 14 14 C 1.50695 * 109.74702 * 329.29413 * 12 2 1 15 15 H 1.08001 * 120.00198 * 325.69268 * 14 12 2 16 16 C 1.37881 * 120.00044 * 145.70009 * 14 12 2 17 17 N 1.31519 * 119.99883 * 356.25117 * 16 14 12 18 18 Si 1.86797 * 120.00189 * 176.25373 * 16 14 12 19 19 H 1.48504 * 109.47198 * 359.97438 * 18 16 14 20 20 H 1.48496 * 109.47565 * 119.99790 * 18 16 14 21 21 H 1.48501 * 109.47183 * 240.00012 * 18 16 14 22 22 H 1.08997 * 109.47123 * 195.55224 * 1 2 3 23 23 H 1.09007 * 109.46982 * 315.55327 * 1 2 3 24 24 H 1.09001 * 109.47167 * 75.55166 * 1 2 3 25 25 H 1.09003 * 109.01793 * 291.45878 * 3 2 1 26 26 H 1.08994 * 109.02248 * 50.28043 * 3 2 1 27 27 H 1.08995 * 109.54639 * 197.26541 * 4 3 2 28 28 H 1.08997 * 109.54563 * 317.54503 * 4 3 2 29 29 H 1.09001 * 109.46945 * 76.80071 * 6 5 4 30 30 H 1.09000 * 109.47367 * 196.80355 * 6 5 4 31 31 H 1.09002 * 109.46573 * 316.80462 * 6 5 4 32 32 H 1.08996 * 109.47459 * 60.00225 * 7 5 4 33 33 H 1.08998 * 109.47020 * 180.02562 * 7 5 4 34 34 H 1.09004 * 109.46996 * 299.99934 * 7 5 4 35 35 H 1.09003 * 108.98433 * 162.15850 * 8 5 4 36 36 H 1.09006 * 108.98161 * 280.95871 * 8 5 4 37 37 H 0.96699 * 113.99564 * 57.88358 * 11 9 8 38 38 H 0.96993 * 119.99734 * 5.04537 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9699 1.3050 0.0000 4 6 3.4971 1.3323 0.2275 5 6 4.1918 0.9516 -1.0551 6 6 3.2992 1.3406 -2.2353 7 6 5.5070 1.7272 -1.1540 8 6 4.4981 -0.5571 -1.1382 9 6 3.3288 -1.4112 -0.6192 10 1 3.3548 -1.4254 0.4704 11 8 3.4753 -2.7470 -1.1052 12 6 1.9980 -0.8655 -1.0727 13 1 2.1294 -0.2831 -1.9847 14 6 1.0419 -2.0020 -1.3279 15 1 0.4805 -2.4295 -0.5103 16 6 0.8840 -2.4964 -2.6054 17 7 1.5112 -1.9287 -3.6124 18 14 -0.2210 -3.9723 -2.9058 19 1 -0.8062 -4.4229 -1.6174 20 1 -1.3115 -3.5925 -3.8394 21 1 0.5769 -5.0753 -3.4991 22 1 -0.3633 -0.9900 0.2755 23 1 -0.3633 0.7337 0.7197 24 1 -0.3633 0.2564 -0.9952 25 1 1.7452 1.7717 -0.9591 26 1 1.4824 1.8726 0.7926 27 1 3.8037 2.3352 0.5245 28 1 3.7619 0.6216 1.0104 29 1 3.3609 2.4166 -2.3983 30 1 3.6333 0.8176 -3.1314 31 1 2.2676 1.0647 -2.0169 32 1 6.1409 1.4777 -0.3032 33 1 6.0179 1.4596 -2.0789 34 1 5.2990 2.7972 -1.1507 35 1 4.6970 -0.8219 -2.1766 36 1 5.3848 -0.7722 -0.5417 37 1 4.3090 -3.1676 -0.8541 38 1 2.1411 -1.2097 -3.4480 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260614557.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:02 Heat of formation + Delta-G solvation = -15.445860 kcal Electronic energy + Delta-G solvation = -17946.967403 eV Core-core repulsion = 15404.728414 eV Total energy + Delta-G solvation = -2542.238989 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.96482 -35.55300 -35.35581 -32.55592 -29.72500 -28.61212 -27.31175 -26.21838 -24.68960 -22.70987 -21.79937 -19.41014 -17.89819 -16.86172 -15.91386 -15.37930 -14.98120 -14.29527 -14.13721 -13.62696 -13.21641 -13.08338 -12.27993 -12.16905 -12.08859 -11.88835 -11.61303 -11.45211 -10.95395 -10.73497 -10.64175 -10.58381 -10.25273 -10.11504 -10.04207 -9.88706 -9.84218 -9.59935 -8.66704 -8.30280 -8.13037 -6.89765 -6.18133 -3.85316 3.51801 3.57580 3.69646 4.64468 4.86863 5.07076 5.15949 5.23805 5.56758 5.65103 5.69690 5.88384 5.95597 5.97886 6.02771 6.06276 6.16942 6.20963 6.28134 6.31324 6.36267 6.40675 6.53446 6.63874 6.68692 6.70980 6.80805 6.99128 7.00751 7.23201 7.43969 7.85658 8.22489 8.58249 8.78610 8.90963 9.08949 9.85122 11.20742 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.031931 B = 0.011215 C = 0.009942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.682620 B = 2496.136734 C = 2815.703640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.566 5.566 3 C 0.062 3.938 4 C -0.106 4.106 5 C -0.057 4.057 6 C -0.172 4.172 7 C -0.138 4.138 8 C -0.140 4.140 9 C 0.119 3.881 10 H 0.037 0.963 11 O -0.527 6.527 12 C 0.183 3.817 13 H 0.059 0.941 14 C -0.564 4.564 15 H 0.051 0.949 16 C 0.034 3.966 17 N -0.915 5.915 18 Si 1.073 2.927 19 H -0.291 1.291 20 H -0.292 1.292 21 H -0.289 1.289 22 H 0.071 0.929 23 H 0.032 0.968 24 H 0.021 0.979 25 H 0.029 0.971 26 H 0.050 0.950 27 H 0.058 0.942 28 H 0.067 0.933 29 H 0.042 0.958 30 H 0.052 0.948 31 H 0.097 0.903 32 H 0.049 0.951 33 H 0.050 0.950 34 H 0.050 0.950 35 H 0.063 0.937 36 H 0.044 0.956 37 H 0.338 0.662 38 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.721 6.001 5.507 9.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 N -0.292 5.292 3 C -0.068 4.068 4 C -0.143 4.143 5 C -0.057 4.057 6 C -0.228 4.228 7 C -0.195 4.195 8 C -0.178 4.178 9 C 0.059 3.941 10 H 0.054 0.946 11 O -0.327 6.327 12 C 0.079 3.921 13 H 0.076 0.924 14 C -0.603 4.603 15 H 0.069 0.931 16 C -0.171 4.171 17 N -0.552 5.552 18 Si 0.902 3.098 19 H -0.217 1.217 20 H -0.219 1.219 21 H -0.216 1.216 22 H 0.089 0.911 23 H 0.050 0.950 24 H 0.040 0.960 25 H 0.046 0.954 26 H 0.068 0.932 27 H 0.077 0.923 28 H 0.086 0.914 29 H 0.061 0.939 30 H 0.071 0.929 31 H 0.115 0.885 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.082 0.918 36 H 0.063 0.937 37 H 0.179 0.821 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.651 4.987 4.459 7.620 hybrid contribution 1.259 1.184 0.800 1.904 sum 4.909 6.170 5.258 9.478 Atomic orbital electron populations 1.21916 0.87330 1.01046 0.98206 1.58790 1.07601 1.11161 1.51604 1.21145 0.94677 0.91678 0.99296 1.21531 0.95207 1.00409 0.97199 1.20191 0.94858 0.94815 0.95865 1.22867 1.02705 0.99667 0.97590 1.21987 0.97114 0.99340 1.01101 1.22851 0.98927 0.94434 1.01586 1.21640 0.95150 0.81894 0.95393 0.94553 1.87104 1.39441 1.27505 1.78616 1.19589 0.91218 0.92580 0.88741 0.92443 1.21658 1.25006 1.17490 0.96144 0.93109 1.25561 0.98674 1.00586 0.92286 1.70727 1.26792 1.24666 1.33023 0.83506 0.75467 0.75872 0.74908 1.21748 1.21913 1.21600 0.91079 0.94967 0.96038 0.95358 0.93157 0.92318 0.91431 0.93923 0.92872 0.88496 0.93193 0.93102 0.93076 0.91824 0.93710 0.82052 0.92110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.31 8.62 60.06 0.52 1.83 16 2 N -0.57 -12.28 4.16 -241.66 -1.01 -13.28 16 3 C 0.06 1.14 4.83 -6.74 -0.03 1.11 16 4 C -0.11 -1.75 5.03 -27.11 -0.14 -1.88 16 5 C -0.06 -0.97 0.72 -155.02 -0.11 -1.08 16 6 C -0.17 -3.19 6.47 37.16 0.24 -2.95 16 7 C -0.14 -1.93 7.96 37.16 0.30 -1.63 16 8 C -0.14 -2.65 4.48 -25.70 -0.12 -2.76 16 9 C 0.12 2.67 2.85 -27.40 -0.08 2.59 16 10 H 0.04 0.82 7.26 -51.93 -0.38 0.45 16 11 O -0.53 -12.55 11.66 -35.23 -0.41 -12.97 16 12 C 0.18 4.47 1.72 -69.56 -0.12 4.35 16 13 H 0.06 1.48 2.09 -51.93 -0.11 1.37 16 14 C -0.56 -15.63 5.72 -34.44 -0.20 -15.83 16 15 H 0.05 1.46 6.52 -52.49 -0.34 1.11 16 16 C 0.03 0.96 5.17 -17.82 -0.09 0.87 16 17 N -0.91 -27.52 13.63 55.43 0.76 -26.76 16 18 Si 1.07 26.17 29.91 -169.99 -5.08 21.09 16 19 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 20 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 21 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 22 H 0.07 1.58 6.40 -51.93 -0.33 1.25 16 23 H 0.03 0.57 7.72 -51.93 -0.40 0.17 16 24 H 0.02 0.47 8.05 -51.93 -0.42 0.06 16 25 H 0.03 0.55 4.97 -51.93 -0.26 0.29 16 26 H 0.05 0.85 7.73 -51.93 -0.40 0.45 16 27 H 0.06 0.83 7.68 -51.93 -0.40 0.43 16 28 H 0.07 1.17 7.11 -51.93 -0.37 0.80 16 29 H 0.04 0.69 7.95 -51.93 -0.41 0.27 16 30 H 0.05 1.05 7.66 -51.93 -0.40 0.65 16 31 H 0.10 2.06 2.68 -51.93 -0.14 1.92 16 32 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.05 0.65 8.02 -51.93 -0.42 0.23 16 35 H 0.06 1.30 7.66 -51.93 -0.40 0.91 16 36 H 0.04 0.75 7.98 -51.93 -0.41 0.33 16 37 H 0.34 6.26 9.06 45.56 0.41 6.67 16 38 H 0.27 7.98 6.47 -40.82 -0.26 7.71 16 LS Contribution 273.58 15.07 4.12 4.12 Total: -1.00 -30.74 273.58 -6.53 -37.27 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: -5.08 Total: 5.92 kcal Atomic # 6 Polarization: -15.56 SS G_CDS: 0.17 Total: -15.39 kcal Atomic # 7 Polarization: -39.80 SS G_CDS: -0.25 Total: -40.05 kcal Atomic # 8 Polarization: -12.55 SS G_CDS: -0.41 Total: -12.97 kcal Atomic # 14 Polarization: 26.17 SS G_CDS: -5.08 Total: 21.09 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -30.74 -6.53 -37.27 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260614557.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.824 kcal (2) G-P(sol) polarization free energy of solvation -30.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds