Wall clock time and date at job start Mon Mar 30 2020 02:48:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.39780 * 110.99950 * 2 1 4 4 C 1.54431 * 111.77078 * 170.87206 * 3 2 1 5 5 C 1.50755 * 109.02128 * 77.40208 * 4 3 2 6 6 C 1.52999 * 108.85933 * 27.79420 * 5 4 3 7 7 C 1.53008 * 108.85131 * 146.28234 * 5 4 3 8 8 C 1.54164 * 112.61310 * 266.98179 * 5 4 3 9 9 C 1.53821 * 111.97170 * 41.51886 * 8 5 4 10 10 H 1.09001 * 109.04822 * 280.41103 * 9 8 5 11 11 O 1.42898 * 109.05213 * 161.51018 * 9 8 5 12 12 C 1.47637 * 110.99764 * 231.10181 * 2 1 3 13 13 H 1.09005 * 109.74530 * 89.96725 * 12 2 1 14 14 C 1.50695 * 109.74702 * 329.29413 * 12 2 1 15 15 H 1.08001 * 120.00198 * 325.69268 * 14 12 2 16 16 C 1.37881 * 120.00044 * 145.70009 * 14 12 2 17 17 N 1.31519 * 119.99883 * 356.25117 * 16 14 12 18 18 Si 1.86797 * 120.00189 * 176.25373 * 16 14 12 19 19 H 1.48504 * 109.47198 * 359.97438 * 18 16 14 20 20 H 1.48496 * 109.47565 * 119.99790 * 18 16 14 21 21 H 1.48501 * 109.47183 * 240.00012 * 18 16 14 22 22 H 1.08997 * 109.47123 * 195.55224 * 1 2 3 23 23 H 1.09007 * 109.46982 * 315.55327 * 1 2 3 24 24 H 1.09001 * 109.47167 * 75.55166 * 1 2 3 25 25 H 1.09003 * 109.01793 * 291.45878 * 3 2 1 26 26 H 1.08994 * 109.02248 * 50.28043 * 3 2 1 27 27 H 1.08995 * 109.54639 * 197.26541 * 4 3 2 28 28 H 1.08997 * 109.54563 * 317.54503 * 4 3 2 29 29 H 1.09001 * 109.46945 * 76.80071 * 6 5 4 30 30 H 1.09000 * 109.47367 * 196.80355 * 6 5 4 31 31 H 1.09002 * 109.46573 * 316.80462 * 6 5 4 32 32 H 1.08996 * 109.47459 * 60.00225 * 7 5 4 33 33 H 1.08998 * 109.47020 * 180.02562 * 7 5 4 34 34 H 1.09004 * 109.46996 * 299.99934 * 7 5 4 35 35 H 1.09003 * 108.98433 * 162.15850 * 8 5 4 36 36 H 1.09006 * 108.98161 * 280.95871 * 8 5 4 37 37 H 0.96699 * 113.99564 * 57.88358 * 11 9 8 38 38 H 0.96993 * 119.99734 * 5.04537 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9699 1.3050 0.0000 4 6 3.4971 1.3323 0.2275 5 6 4.1918 0.9516 -1.0551 6 6 3.2992 1.3406 -2.2353 7 6 5.5070 1.7272 -1.1540 8 6 4.4981 -0.5571 -1.1382 9 6 3.3288 -1.4112 -0.6192 10 1 3.3548 -1.4254 0.4704 11 8 3.4753 -2.7470 -1.1052 12 6 1.9980 -0.8655 -1.0727 13 1 2.1294 -0.2831 -1.9847 14 6 1.0419 -2.0020 -1.3279 15 1 0.4805 -2.4295 -0.5103 16 6 0.8840 -2.4964 -2.6054 17 7 1.5112 -1.9287 -3.6124 18 14 -0.2210 -3.9723 -2.9058 19 1 -0.8062 -4.4229 -1.6174 20 1 -1.3115 -3.5925 -3.8394 21 1 0.5769 -5.0753 -3.4991 22 1 -0.3633 -0.9900 0.2755 23 1 -0.3633 0.7337 0.7197 24 1 -0.3633 0.2564 -0.9952 25 1 1.7452 1.7717 -0.9591 26 1 1.4824 1.8726 0.7926 27 1 3.8037 2.3352 0.5245 28 1 3.7619 0.6216 1.0104 29 1 3.3609 2.4166 -2.3983 30 1 3.6333 0.8176 -3.1314 31 1 2.2676 1.0647 -2.0169 32 1 6.1409 1.4777 -0.3032 33 1 6.0179 1.4596 -2.0789 34 1 5.2990 2.7972 -1.1507 35 1 4.6970 -0.8219 -2.1766 36 1 5.3848 -0.7722 -0.5417 37 1 4.3090 -3.1676 -0.8541 38 1 2.1411 -1.2097 -3.4480 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260614557.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:02 Heat of formation + Delta-G solvation = -38.012623 kcal Electronic energy + Delta-G solvation = -17947.945971 eV Core-core repulsion = 15404.728414 eV Total energy + Delta-G solvation = -2543.217558 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.53497 -37.31473 -36.92699 -34.61013 -31.45286 -30.05701 -28.79748 -27.94947 -26.35329 -24.54997 -23.35800 -21.22145 -19.31807 -18.80161 -17.73964 -16.92381 -16.70661 -15.92597 -15.71669 -15.50323 -14.75202 -14.65184 -13.98423 -13.82993 -13.66987 -13.41896 -13.09328 -12.93747 -12.60748 -12.47533 -12.34349 -12.23040 -11.95239 -11.89490 -11.59865 -11.47486 -11.26616 -11.21172 -10.47923 -10.40049 -10.10894 -8.63366 -8.41727 -6.07914 1.52084 1.61985 1.76398 2.62962 3.17765 3.45089 3.66206 3.83870 3.87778 4.20249 4.26783 4.37498 4.51773 4.55164 4.61734 4.66120 4.71794 4.77852 4.81712 4.87303 4.90793 5.00247 5.08210 5.12040 5.17217 5.23615 5.31929 5.41892 5.51912 5.55899 5.62356 5.97053 6.18654 6.60765 6.73784 7.08637 7.32350 7.68647 8.97401 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.031931 B = 0.011215 C = 0.009942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.682620 B = 2496.136734 C = 2815.703640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.568 5.568 3 C 0.053 3.947 4 C -0.099 4.099 5 C -0.057 4.057 6 C -0.165 4.165 7 C -0.132 4.132 8 C -0.131 4.131 9 C 0.120 3.880 10 H 0.034 0.966 11 O -0.559 6.559 12 C 0.177 3.823 13 H 0.047 0.953 14 C -0.563 4.563 15 H 0.033 0.967 16 C -0.014 4.014 17 N -0.942 5.942 18 Si 1.109 2.891 19 H -0.279 1.279 20 H -0.283 1.283 21 H -0.288 1.288 22 H 0.051 0.949 23 H 0.069 0.931 24 H -0.002 1.002 25 H 0.023 0.977 26 H 0.073 0.927 27 H 0.093 0.907 28 H 0.063 0.937 29 H 0.066 0.934 30 H 0.029 0.971 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.048 0.952 34 H 0.069 0.931 35 H 0.040 0.960 36 H 0.071 0.929 37 H 0.359 0.641 38 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.688 7.276 6.882 11.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 N -0.294 5.294 3 C -0.076 4.076 4 C -0.136 4.136 5 C -0.057 4.057 6 C -0.222 4.222 7 C -0.189 4.189 8 C -0.169 4.169 9 C 0.061 3.939 10 H 0.052 0.948 11 O -0.362 6.362 12 C 0.072 3.928 13 H 0.064 0.936 14 C -0.602 4.602 15 H 0.052 0.948 16 C -0.213 4.213 17 N -0.582 5.582 18 Si 0.934 3.066 19 H -0.204 1.204 20 H -0.210 1.210 21 H -0.215 1.215 22 H 0.070 0.930 23 H 0.087 0.913 24 H 0.017 0.983 25 H 0.040 0.960 26 H 0.092 0.908 27 H 0.111 0.889 28 H 0.082 0.918 29 H 0.085 0.915 30 H 0.048 0.952 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.067 0.933 34 H 0.088 0.912 35 H 0.059 0.941 36 H 0.090 0.910 37 H 0.204 0.796 38 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 4.627 6.272 5.858 9.750 hybrid contribution 0.940 0.815 0.434 1.318 sum 5.568 7.087 6.292 10.991 Atomic orbital electron populations 1.21879 0.87412 1.00985 0.97875 1.58822 1.07694 1.12785 1.50075 1.21320 0.96539 0.89943 0.99810 1.21523 0.93335 1.02274 0.96505 1.20231 0.96413 0.93646 0.95420 1.22759 1.01143 1.00846 0.97425 1.21922 0.95218 0.99889 1.01846 1.22732 0.98321 0.95543 1.00333 1.21609 0.95440 0.81803 0.95089 0.94807 1.87017 1.41427 1.28668 1.79123 1.19569 0.91729 0.92019 0.89499 0.93602 1.21883 1.24909 1.18019 0.95369 0.94836 1.26678 0.99660 1.02400 0.92578 1.70828 1.28151 1.25629 1.33576 0.83022 0.74518 0.73489 0.75526 1.20397 1.20973 1.21463 0.93049 0.91262 0.98326 0.95989 0.90846 0.88872 0.91849 0.91504 0.95214 0.91434 0.91456 0.93276 0.91175 0.94094 0.91044 0.79628 0.93211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.77 8.62 127.69 1.10 3.87 16 2 N -0.57 -24.30 4.16 -918.48 -3.82 -28.12 16 3 C 0.05 1.85 4.83 88.07 0.43 2.27 16 4 C -0.10 -2.93 5.03 30.35 0.15 -2.78 16 5 C -0.06 -1.80 0.72 -52.51 -0.04 -1.83 16 6 C -0.17 -6.00 6.47 71.98 0.47 -5.53 16 7 C -0.13 -3.16 7.96 71.98 0.57 -2.59 16 8 C -0.13 -4.81 4.48 31.27 0.14 -4.67 16 9 C 0.12 5.35 2.85 30.16 0.09 5.44 16 10 H 0.03 1.50 7.26 -2.39 -0.02 1.49 16 11 O -0.56 -26.89 11.66 -148.98 -1.74 -28.63 16 12 C 0.18 8.75 1.72 43.32 0.07 8.82 16 13 H 0.05 2.44 2.09 -2.38 0.00 2.43 16 14 C -0.56 -31.90 5.72 25.60 0.15 -31.75 16 15 H 0.03 1.97 6.52 -2.91 -0.02 1.95 16 16 C -0.01 -0.85 5.17 84.65 0.44 -0.41 16 17 N -0.94 -58.29 13.63 21.45 0.29 -58.00 16 18 Si 1.11 53.49 29.91 68.60 2.05 55.55 16 19 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 20 H -0.28 -13.16 7.11 99.48 0.71 -12.46 16 21 H -0.29 -13.75 7.11 99.48 0.71 -13.05 16 22 H 0.05 2.31 6.40 -2.39 -0.02 2.29 16 23 H 0.07 2.34 7.72 -2.38 -0.02 2.32 16 24 H 0.00 -0.09 8.05 -2.39 -0.02 -0.11 16 25 H 0.02 0.83 4.97 -2.39 -0.01 0.82 16 26 H 0.07 2.22 7.73 -2.39 -0.02 2.21 16 27 H 0.09 2.16 7.68 -2.39 -0.02 2.14 16 28 H 0.06 1.97 7.11 -2.39 -0.02 1.95 16 29 H 0.07 2.03 7.95 -2.39 -0.02 2.01 16 30 H 0.03 1.18 7.66 -2.39 -0.02 1.16 16 31 H 0.07 2.89 2.68 -2.39 -0.01 2.88 16 32 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.07 1.44 8.02 -2.38 -0.02 1.42 16 35 H 0.04 1.67 7.66 -2.39 -0.02 1.66 16 36 H 0.07 2.21 7.98 -2.38 -0.02 2.19 16 37 H 0.36 13.24 9.06 -74.06 -0.67 12.57 16 38 H 0.26 15.96 6.47 -92.71 -0.60 15.36 16 Total: -1.00 -67.44 273.58 0.90 -66.54 By element: Atomic # 1 Polarization: 21.28 SS G_CDS: 0.55 Total: 21.83 kcal Atomic # 6 Polarization: -32.72 SS G_CDS: 3.57 Total: -29.16 kcal Atomic # 7 Polarization: -82.59 SS G_CDS: -3.53 Total: -86.12 kcal Atomic # 8 Polarization: -26.89 SS G_CDS: -1.74 Total: -28.63 kcal Atomic # 14 Polarization: 53.49 SS G_CDS: 2.05 Total: 55.55 kcal Total: -67.44 0.90 -66.54 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260614557.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.525 kcal (2) G-P(sol) polarization free energy of solvation -67.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds