Wall clock time and date at job start Mon Mar 30 2020 03:04:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.46957 * 2 1 4 4 C 1.52998 * 109.47124 * 240.00067 * 2 1 3 5 5 C 1.52998 * 109.47486 * 120.00225 * 2 1 3 6 6 H 1.09001 * 109.46970 * 322.97355 * 5 2 1 7 7 C 1.50698 * 109.47417 * 82.97423 * 5 2 1 8 8 H 1.07992 * 119.99877 * 64.58133 * 7 5 2 9 9 C 1.37881 * 120.00027 * 244.85838 * 7 5 2 10 10 N 1.31516 * 119.99826 * 331.48607 * 9 7 5 11 11 Si 1.86795 * 120.00122 * 151.48994 * 9 7 5 12 12 H 1.48506 * 109.46957 * 0.02562 * 11 9 7 13 13 H 1.48504 * 109.47190 * 119.99373 * 11 9 7 14 14 H 1.48497 * 109.47289 * 239.99880 * 11 9 7 15 15 N 1.46903 * 109.47371 * 202.97686 * 5 2 1 16 16 C 1.47902 * 111.00062 * 79.13421 * 15 5 2 17 17 C 1.53990 * 107.06066 * 214.15937 * 16 15 5 18 18 C 1.54600 * 105.13685 * 1.22100 * 17 16 15 19 19 H 1.08997 * 110.73052 * 263.60165 * 18 17 16 20 20 O 1.42910 * 110.72372 * 140.31508 * 18 17 16 21 21 C 1.48533 * 110.99942 * 321.73884 * 15 5 2 22 22 H 1.09003 * 109.47188 * 297.27293 * 1 2 3 23 23 H 1.08991 * 109.47494 * 57.27651 * 1 2 3 24 24 H 1.09009 * 109.46755 * 177.28101 * 1 2 3 25 25 H 1.09001 * 109.47197 * 137.31469 * 3 2 1 26 26 H 1.08999 * 109.47154 * 257.31206 * 3 2 1 27 27 H 1.08999 * 109.47010 * 17.32038 * 3 2 1 28 28 H 1.08999 * 109.47261 * 254.76890 * 4 2 1 29 29 H 1.09003 * 109.47198 * 14.76911 * 4 2 1 30 30 H 1.09000 * 109.47029 * 134.76802 * 4 2 1 31 31 H 0.97000 * 119.99888 * 179.97438 * 10 9 7 32 32 H 1.09008 * 109.91789 * 333.51094 * 16 15 5 33 33 H 1.09000 * 109.91664 * 94.60767 * 16 15 5 34 34 H 1.08998 * 110.31317 * 120.13661 * 17 16 15 35 35 H 1.08998 * 110.31198 * 242.31416 * 17 16 15 36 36 H 0.96704 * 113.99635 * 61.45500 * 20 18 17 37 37 H 1.08996 * 110.66522 * 278.15721 * 21 15 5 38 38 H 1.09002 * 110.66857 * 41.28184 * 21 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0401 -0.7213 1.2492 6 1 1.3877 -0.4934 2.0921 7 6 2.0437 -2.2082 1.0044 8 1 2.6938 -2.6301 0.2523 9 6 1.2129 -3.0295 1.7368 10 7 0.8555 -2.6857 2.9549 11 14 0.5951 -4.6305 0.9990 12 1 1.1387 -4.7849 -0.3743 13 1 1.0449 -5.7691 1.8397 14 1 -0.8888 -4.6107 0.9453 15 7 3.4055 -0.2714 1.5512 16 6 3.3926 1.0422 2.2308 17 6 4.6427 1.8075 1.7585 18 6 5.3390 0.8618 0.7530 19 1 6.1305 0.2940 1.2420 20 8 5.8548 1.5970 -0.3587 21 6 4.1891 -0.0748 0.3048 22 1 -0.3634 0.4709 0.9134 23 1 -0.3634 0.5555 -0.8645 24 1 -0.3633 -1.0266 -0.0488 25 1 2.8733 1.5333 0.6967 26 1 2.3738 1.7099 -1.0026 27 1 1.2361 2.1121 0.3059 28 1 2.4156 -1.7062 -0.9722 29 1 1.2242 -0.8312 -1.9638 30 1 2.8434 -0.1400 -1.7018 31 1 0.2707 -3.2632 3.4700 32 1 2.4936 1.5939 1.9557 33 1 3.4258 0.9017 3.3112 34 1 4.3543 2.7365 1.2667 35 1 5.3013 2.0137 2.6022 36 1 6.5235 2.2535 -0.1198 37 1 4.5846 -1.0247 -0.0548 38 1 3.5794 0.4040 -0.4615 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261027766.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:35 Heat of formation + Delta-G solvation = 18.779068 kcal Electronic energy + Delta-G solvation = -17710.047975 eV Core-core repulsion = 15169.293089 eV Total energy + Delta-G solvation = -2540.754885 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.31764 -36.61612 -34.19900 -32.50112 -29.79898 -28.35992 -27.21602 -26.25976 -25.21653 -22.73446 -20.43462 -19.96087 -18.12035 -17.01938 -16.14032 -15.68706 -15.02651 -14.31293 -14.11406 -13.44934 -13.28985 -12.93100 -12.55759 -12.30406 -11.83731 -11.72007 -11.39415 -11.04838 -10.81515 -10.69564 -10.66702 -10.58830 -10.50199 -10.13654 -9.89501 -9.77934 -9.63126 -9.58267 -9.10688 -8.90979 -8.14518 -7.00007 -6.10299 -3.94995 3.29927 3.40714 3.45535 4.41671 4.47378 4.99996 5.15749 5.20892 5.38028 5.61689 5.75469 5.82260 5.88666 5.94846 6.09317 6.21433 6.25247 6.37498 6.44840 6.52678 6.57016 6.63721 6.64425 6.74649 6.80960 6.87971 6.95548 7.21292 7.28652 7.39798 7.46541 7.85818 7.93925 8.05970 8.40368 8.65605 9.04303 9.59864 10.98998 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.032107 B = 0.009846 C = 0.009352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.878695 B = 2843.236078 C = 2993.451753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.093 4.093 3 C -0.202 4.202 4 C -0.152 4.152 5 C 0.202 3.798 6 H 0.070 0.930 7 C -0.500 4.500 8 H 0.064 0.936 9 C 0.080 3.920 10 N -0.865 5.865 11 Si 0.870 3.130 12 H -0.270 1.270 13 H -0.286 1.286 14 H -0.283 1.283 15 N -0.492 5.492 16 C 0.013 3.987 17 C -0.165 4.165 18 C 0.090 3.910 19 H 0.063 0.937 20 O -0.566 6.566 21 C 0.016 3.984 22 H 0.040 0.960 23 H 0.031 0.969 24 H 0.058 0.942 25 H 0.106 0.894 26 H 0.041 0.959 27 H 0.037 0.963 28 H 0.092 0.908 29 H 0.030 0.970 30 H 0.038 0.962 31 H 0.260 0.740 32 H 0.061 0.939 33 H 0.065 0.935 34 H 0.069 0.931 35 H 0.065 0.935 36 H 0.369 0.631 37 H 0.074 0.926 38 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.619 8.023 -3.485 9.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.095 4.095 3 C -0.259 4.259 4 C -0.208 4.208 5 C 0.096 3.904 6 H 0.088 0.912 7 C -0.538 4.538 8 H 0.082 0.918 9 C -0.125 4.125 10 N -0.501 5.501 11 Si 0.697 3.303 12 H -0.194 1.194 13 H -0.213 1.213 14 H -0.209 1.209 15 N -0.217 5.217 16 C -0.114 4.114 17 C -0.203 4.203 18 C 0.031 3.969 19 H 0.081 0.919 20 O -0.370 6.370 21 C -0.111 4.111 22 H 0.059 0.941 23 H 0.050 0.950 24 H 0.077 0.923 25 H 0.124 0.876 26 H 0.060 0.940 27 H 0.056 0.944 28 H 0.110 0.890 29 H 0.049 0.951 30 H 0.057 0.943 31 H 0.069 0.931 32 H 0.079 0.921 33 H 0.084 0.916 34 H 0.087 0.913 35 H 0.083 0.917 36 H 0.215 0.785 37 H 0.092 0.908 38 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 4.310 7.182 -3.293 9.001 hybrid contribution -0.511 0.116 -0.441 0.685 sum 3.799 7.298 -3.735 9.036 Atomic orbital electron populations 1.21743 0.95697 1.01339 0.98956 1.21248 0.95271 0.93403 0.99572 1.23521 1.02705 0.97281 1.02344 1.22577 0.98912 1.03458 0.95857 1.19880 0.84410 0.94212 0.91895 0.91231 1.20758 1.23026 0.90813 1.19204 0.91788 1.24891 0.96720 0.97367 0.93533 1.70190 1.33946 1.38735 1.07231 0.86912 0.79002 0.84177 0.80251 1.19435 1.21283 1.20913 1.65691 1.17307 1.20945 1.17782 1.23195 0.96111 0.92248 0.99875 1.23163 0.98651 0.99054 0.99445 1.22953 0.96017 0.92024 0.85914 0.91881 1.86523 1.60494 1.55230 1.34791 1.23926 0.93627 0.97982 0.95545 0.94076 0.94986 0.92330 0.87616 0.94013 0.94445 0.88959 0.95071 0.94330 0.93059 0.92101 0.91625 0.91288 0.91655 0.78466 0.90786 0.89135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.44 7.77 37.16 0.29 -2.15 16 2 C -0.09 -1.94 0.58 -154.51 -0.09 -2.03 16 3 C -0.20 -3.78 6.49 37.16 0.24 -3.53 16 4 C -0.15 -3.08 7.63 37.16 0.28 -2.80 16 5 C 0.20 4.84 1.86 -68.86 -0.13 4.71 16 6 H 0.07 1.88 6.79 -51.93 -0.35 1.53 16 7 C -0.50 -13.17 6.86 -34.44 -0.24 -13.41 16 8 H 0.06 1.71 6.19 -52.49 -0.32 1.38 16 9 C 0.08 2.16 5.35 -17.82 -0.10 2.07 16 10 N -0.87 -24.50 12.97 55.43 0.72 -23.79 16 11 Si 0.87 20.71 29.62 -169.99 -5.04 15.68 16 12 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 13 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 14 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 15 N -0.49 -10.83 5.16 -243.87 -1.26 -12.09 16 16 C 0.01 0.25 5.69 -2.76 -0.02 0.23 16 17 C -0.16 -2.51 6.02 -25.37 -0.15 -2.67 16 18 C 0.09 1.48 4.43 -24.87 -0.11 1.37 16 19 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 20 O -0.57 -8.42 13.40 -35.23 -0.47 -8.89 16 21 C 0.02 0.33 4.25 -1.90 -0.01 0.32 16 22 H 0.04 0.83 8.07 -51.93 -0.42 0.41 16 23 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.06 1.28 8.10 -51.92 -0.42 0.86 16 25 H 0.11 1.93 0.97 -75.91 -0.07 1.86 16 26 H 0.04 0.75 7.00 -51.93 -0.36 0.38 16 27 H 0.04 0.66 7.68 -51.93 -0.40 0.26 16 28 H 0.09 2.06 4.57 -51.93 -0.24 1.82 16 29 H 0.03 0.59 7.66 -51.93 -0.40 0.19 16 30 H 0.04 0.73 5.70 -51.93 -0.30 0.44 16 31 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 32 H 0.06 1.15 5.10 -51.92 -0.26 0.88 16 33 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 34 H 0.07 0.98 7.76 -51.93 -0.40 0.57 16 35 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.37 3.63 9.11 45.56 0.42 4.05 16 37 H 0.07 1.55 8.14 -51.93 -0.42 1.13 16 38 H 0.09 1.79 1.99 -51.93 -0.10 1.69 16 LS Contribution 275.12 15.07 4.15 4.15 Total: -1.00 -28.63 275.12 -6.81 -35.44 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: -4.89 Total: 7.38 kcal Atomic # 6 Polarization: -17.86 SS G_CDS: -0.02 Total: -17.89 kcal Atomic # 7 Polarization: -35.33 SS G_CDS: -0.54 Total: -35.87 kcal Atomic # 8 Polarization: -8.42 SS G_CDS: -0.47 Total: -8.89 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.04 Total: 15.68 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -28.63 -6.81 -35.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261027766.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.219 kcal (2) G-P(sol) polarization free energy of solvation -28.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.440 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds