Wall clock time and date at job start Mon Mar 30 2020 03:04:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.46957 * 2 1 4 4 C 1.52998 * 109.47124 * 240.00067 * 2 1 3 5 5 C 1.52998 * 109.47486 * 120.00225 * 2 1 3 6 6 H 1.09001 * 109.46970 * 322.97355 * 5 2 1 7 7 C 1.50698 * 109.47417 * 82.97423 * 5 2 1 8 8 H 1.07992 * 119.99877 * 64.58133 * 7 5 2 9 9 C 1.37881 * 120.00027 * 244.85838 * 7 5 2 10 10 N 1.31516 * 119.99826 * 331.48607 * 9 7 5 11 11 Si 1.86795 * 120.00122 * 151.48994 * 9 7 5 12 12 H 1.48506 * 109.46957 * 0.02562 * 11 9 7 13 13 H 1.48504 * 109.47190 * 119.99373 * 11 9 7 14 14 H 1.48497 * 109.47289 * 239.99880 * 11 9 7 15 15 N 1.46903 * 109.47371 * 202.97686 * 5 2 1 16 16 C 1.47902 * 111.00062 * 79.13421 * 15 5 2 17 17 C 1.53990 * 107.06066 * 214.15937 * 16 15 5 18 18 C 1.54600 * 105.13685 * 1.22100 * 17 16 15 19 19 H 1.08997 * 110.73052 * 263.60165 * 18 17 16 20 20 O 1.42910 * 110.72372 * 140.31508 * 18 17 16 21 21 C 1.48533 * 110.99942 * 321.73884 * 15 5 2 22 22 H 1.09003 * 109.47188 * 297.27293 * 1 2 3 23 23 H 1.08991 * 109.47494 * 57.27651 * 1 2 3 24 24 H 1.09009 * 109.46755 * 177.28101 * 1 2 3 25 25 H 1.09001 * 109.47197 * 137.31469 * 3 2 1 26 26 H 1.08999 * 109.47154 * 257.31206 * 3 2 1 27 27 H 1.08999 * 109.47010 * 17.32038 * 3 2 1 28 28 H 1.08999 * 109.47261 * 254.76890 * 4 2 1 29 29 H 1.09003 * 109.47198 * 14.76911 * 4 2 1 30 30 H 1.09000 * 109.47029 * 134.76802 * 4 2 1 31 31 H 0.97000 * 119.99888 * 179.97438 * 10 9 7 32 32 H 1.09008 * 109.91789 * 333.51094 * 16 15 5 33 33 H 1.09000 * 109.91664 * 94.60767 * 16 15 5 34 34 H 1.08998 * 110.31317 * 120.13661 * 17 16 15 35 35 H 1.08998 * 110.31198 * 242.31416 * 17 16 15 36 36 H 0.96704 * 113.99635 * 61.45500 * 20 18 17 37 37 H 1.08996 * 110.66522 * 278.15721 * 21 15 5 38 38 H 1.09002 * 110.66857 * 41.28184 * 21 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0401 -0.7213 1.2492 6 1 1.3877 -0.4934 2.0921 7 6 2.0437 -2.2082 1.0044 8 1 2.6938 -2.6301 0.2523 9 6 1.2129 -3.0295 1.7368 10 7 0.8555 -2.6857 2.9549 11 14 0.5951 -4.6305 0.9990 12 1 1.1387 -4.7849 -0.3743 13 1 1.0449 -5.7691 1.8397 14 1 -0.8888 -4.6107 0.9453 15 7 3.4055 -0.2714 1.5512 16 6 3.3926 1.0422 2.2308 17 6 4.6427 1.8075 1.7585 18 6 5.3390 0.8618 0.7530 19 1 6.1305 0.2940 1.2420 20 8 5.8548 1.5970 -0.3587 21 6 4.1891 -0.0748 0.3048 22 1 -0.3634 0.4709 0.9134 23 1 -0.3634 0.5555 -0.8645 24 1 -0.3633 -1.0266 -0.0488 25 1 2.8733 1.5333 0.6967 26 1 2.3738 1.7099 -1.0026 27 1 1.2361 2.1121 0.3059 28 1 2.4156 -1.7062 -0.9722 29 1 1.2242 -0.8312 -1.9638 30 1 2.8434 -0.1400 -1.7018 31 1 0.2707 -3.2632 3.4700 32 1 2.4936 1.5939 1.9557 33 1 3.4258 0.9017 3.3112 34 1 4.3543 2.7365 1.2667 35 1 5.3013 2.0137 2.6022 36 1 6.5235 2.2535 -0.1198 37 1 4.5846 -1.0247 -0.0548 38 1 3.5794 0.4040 -0.4615 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261027766.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:35 Heat of formation + Delta-G solvation = -2.868425 kcal Electronic energy + Delta-G solvation = -17710.986680 eV Core-core repulsion = 15169.293089 eV Total energy + Delta-G solvation = -2541.693591 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.88751 -37.96698 -35.66826 -34.48940 -31.39940 -29.87915 -28.86033 -27.90589 -26.91551 -24.53346 -21.77649 -21.53406 -19.82485 -18.55711 -17.84696 -17.11866 -16.78184 -15.93801 -15.72792 -15.03987 -14.90911 -14.40310 -14.22620 -13.91568 -13.57842 -13.18106 -12.92556 -12.87101 -12.45808 -12.41507 -12.27080 -12.17198 -12.05548 -11.80861 -11.59663 -11.33019 -11.23963 -10.98125 -10.85408 -10.65846 -10.16752 -8.67084 -8.15064 -6.03919 1.37995 1.43950 1.54183 2.45655 2.99270 3.31417 3.68921 3.84074 4.03514 4.12796 4.20596 4.28645 4.33149 4.45549 4.70998 4.80422 4.83744 4.89229 4.94760 4.97053 5.02002 5.06022 5.09118 5.20497 5.23424 5.32049 5.34316 5.50657 5.65123 5.67108 5.70295 5.94105 6.20387 6.64537 6.80709 6.99808 7.00200 7.52447 8.94011 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.032107 B = 0.009846 C = 0.009352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.878695 B = 2843.236078 C = 2993.451753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.094 4.094 3 C -0.197 4.197 4 C -0.145 4.145 5 C 0.208 3.792 6 H 0.030 0.970 7 C -0.504 4.504 8 H 0.056 0.944 9 C 0.033 3.967 10 N -0.903 5.903 11 Si 0.926 3.074 12 H -0.265 1.265 13 H -0.288 1.288 14 H -0.280 1.280 15 N -0.520 5.520 16 C 0.009 3.991 17 C -0.150 4.150 18 C 0.101 3.899 19 H 0.067 0.933 20 O -0.573 6.573 21 C 0.014 3.986 22 H 0.034 0.966 23 H 0.059 0.941 24 H 0.035 0.965 25 H 0.111 0.889 26 H 0.053 0.947 27 H 0.046 0.954 28 H 0.068 0.932 29 H 0.041 0.959 30 H 0.052 0.948 31 H 0.259 0.741 32 H 0.061 0.939 33 H 0.055 0.945 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.395 0.605 37 H 0.052 0.948 38 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.518 9.559 -4.664 11.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.096 4.096 3 C -0.253 4.253 4 C -0.201 4.201 5 C 0.101 3.899 6 H 0.049 0.951 7 C -0.542 4.542 8 H 0.074 0.926 9 C -0.169 4.169 10 N -0.541 5.541 11 Si 0.752 3.248 12 H -0.189 1.189 13 H -0.214 1.214 14 H -0.206 1.206 15 N -0.245 5.245 16 C -0.118 4.118 17 C -0.188 4.188 18 C 0.042 3.958 19 H 0.085 0.915 20 O -0.381 6.381 21 C -0.114 4.114 22 H 0.053 0.947 23 H 0.078 0.922 24 H 0.054 0.946 25 H 0.129 0.871 26 H 0.072 0.928 27 H 0.065 0.935 28 H 0.086 0.914 29 H 0.060 0.940 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.079 0.921 33 H 0.073 0.927 34 H 0.106 0.894 35 H 0.109 0.891 36 H 0.245 0.755 37 H 0.070 0.930 38 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 5.233 8.732 -4.486 11.124 hybrid contribution -0.727 -0.319 -0.087 0.799 sum 4.506 8.413 -4.573 10.583 Atomic orbital electron populations 1.21712 0.95515 1.00293 0.99893 1.21174 0.95464 0.94818 0.98175 1.23437 1.03184 0.95471 1.03246 1.22459 0.99617 1.02208 0.95820 1.19633 0.85016 0.93439 0.91800 0.95128 1.21038 1.22424 0.92430 1.18291 0.92618 1.25534 0.97260 1.00304 0.93761 1.70279 1.35290 1.40208 1.08341 0.86026 0.78448 0.80791 0.79553 1.18876 1.21419 1.20620 1.65381 1.16345 1.23419 1.19313 1.23221 0.98220 0.91256 0.99084 1.23087 0.96936 0.98750 1.00070 1.22652 0.95048 0.91909 0.86234 0.91545 1.86461 1.61522 1.55959 1.34159 1.23856 0.94788 0.98006 0.94704 0.94671 0.92242 0.94567 0.87150 0.92787 0.93473 0.91378 0.93969 0.92920 0.93149 0.92145 0.92670 0.89372 0.89138 0.75539 0.92961 0.88930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.68 7.77 71.98 0.56 -4.12 16 2 C -0.09 -3.86 0.58 -52.18 -0.03 -3.89 16 3 C -0.20 -6.90 6.49 71.98 0.47 -6.44 16 4 C -0.14 -5.72 7.63 71.98 0.55 -5.17 16 5 C 0.21 10.12 1.86 44.17 0.08 10.20 16 6 H 0.03 1.71 6.79 -2.39 -0.02 1.70 16 7 C -0.50 -27.16 6.86 25.60 0.18 -26.98 16 8 H 0.06 3.05 6.19 -2.91 -0.02 3.03 16 9 C 0.03 1.81 5.35 84.66 0.45 2.27 16 10 N -0.90 -52.81 12.97 21.45 0.28 -52.53 16 11 Si 0.93 43.48 29.62 68.60 2.03 45.51 16 12 H -0.26 -12.05 7.11 99.48 0.71 -11.35 16 13 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 14 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 15 N -0.52 -22.85 5.16 -925.47 -4.77 -27.62 16 16 C 0.01 0.35 5.69 86.44 0.49 0.84 16 17 C -0.15 -4.08 6.02 31.47 0.19 -3.89 16 18 C 0.10 3.04 4.43 31.80 0.14 3.18 16 19 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 20 O -0.57 -14.87 13.40 -148.98 -2.00 -16.87 16 21 C 0.01 0.52 4.25 86.65 0.37 0.89 16 22 H 0.03 1.41 8.07 -2.39 -0.02 1.39 16 23 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 24 H 0.04 1.58 8.10 -2.38 -0.02 1.56 16 25 H 0.11 3.78 0.97 -24.91 -0.02 3.76 16 26 H 0.05 1.76 7.00 -2.39 -0.02 1.74 16 27 H 0.05 1.54 7.68 -2.39 -0.02 1.52 16 28 H 0.07 3.04 4.57 -2.39 -0.01 3.03 16 29 H 0.04 1.54 7.66 -2.39 -0.02 1.52 16 30 H 0.05 1.91 5.70 -2.39 -0.01 1.89 16 31 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 32 H 0.06 2.21 5.10 -2.38 -0.01 2.20 16 33 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 34 H 0.09 2.10 7.76 -2.39 -0.02 2.08 16 35 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 36 H 0.39 5.98 9.11 -74.05 -0.67 5.31 16 37 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 38 H 0.09 3.50 1.99 -2.39 0.00 3.49 16 Total: -1.00 -62.25 275.12 -0.65 -62.89 By element: Atomic # 1 Polarization: 21.36 SS G_CDS: 0.37 Total: 21.73 kcal Atomic # 6 Polarization: -36.56 SS G_CDS: 3.45 Total: -33.11 kcal Atomic # 7 Polarization: -75.66 SS G_CDS: -4.50 Total: -80.16 kcal Atomic # 8 Polarization: -14.87 SS G_CDS: -2.00 Total: -16.87 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.51 kcal Total: -62.25 -0.65 -62.89 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261027766.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.025 kcal (2) G-P(sol) polarization free energy of solvation -62.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds