Wall clock time and date at job start Mon Mar 30 2020 03:04:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52994 * 109.47283 * 2 1 4 4 C 1.53001 * 109.47462 * 120.00405 * 2 1 3 5 5 C 1.53003 * 109.47427 * 171.91060 * 4 2 1 6 6 H 1.08995 * 109.47300 * 179.18577 * 5 4 2 7 7 C 1.50705 * 109.47270 * 59.18265 * 5 4 2 8 8 H 1.07996 * 120.00589 * 240.00439 * 7 5 4 9 9 C 1.37878 * 119.99311 * 60.00062 * 7 5 4 10 10 N 1.31514 * 119.99727 * 179.97438 * 9 7 5 11 11 Si 1.86803 * 120.00446 * 0.02562 * 9 7 5 12 12 H 1.48501 * 109.46936 * 269.99744 * 11 9 7 13 13 H 1.48493 * 109.46813 * 29.99875 * 11 9 7 14 14 H 1.48506 * 109.47045 * 149.99742 * 11 9 7 15 15 N 1.46906 * 109.46937 * 299.19013 * 5 4 2 16 16 C 1.47896 * 111.00235 * 83.19006 * 15 5 4 17 17 C 1.53993 * 107.05978 * 214.15386 * 16 15 5 18 18 C 1.54596 * 105.13741 * 1.23066 * 17 16 15 19 19 H 1.09002 * 110.72186 * 263.41790 * 18 17 16 20 20 O 1.42906 * 110.72392 * 140.31315 * 18 17 16 21 21 C 1.48537 * 110.99766 * 325.79495 * 15 5 4 22 22 H 1.09003 * 109.46877 * 299.99264 * 1 2 3 23 23 H 1.08994 * 109.47720 * 59.99926 * 1 2 3 24 24 H 1.09006 * 109.47212 * 179.97438 * 1 2 3 25 25 H 1.09007 * 109.47195 * 240.00341 * 2 1 3 26 26 H 1.08999 * 109.47533 * 71.34142 * 3 2 1 27 27 H 1.09001 * 109.47609 * 191.34039 * 3 2 1 28 28 H 1.09006 * 109.47200 * 311.34126 * 3 2 1 29 29 H 1.08993 * 109.47217 * 51.91061 * 4 2 1 30 30 H 1.09001 * 109.46658 * 291.91023 * 4 2 1 31 31 H 0.97006 * 120.00408 * 180.02562 * 10 9 7 32 32 H 1.09003 * 109.91856 * 333.51262 * 16 15 5 33 33 H 1.09008 * 109.91393 * 94.60554 * 16 15 5 34 34 H 1.09000 * 110.30710 * 120.14332 * 17 16 15 35 35 H 1.08996 * 110.31311 * 242.21336 * 17 16 15 36 36 H 0.96700 * 113.99476 * 61.45128 * 20 18 17 37 37 H 1.08998 * 110.66927 * 278.15791 * 21 15 5 38 38 H 1.09002 * 110.66333 * 41.28993 * 21 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5565 -0.8995 1.1518 6 1 3.9218 -1.4004 2.0482 7 6 4.2141 0.4508 1.0276 8 1 4.8119 0.6826 0.1586 9 6 4.0523 1.3904 2.0236 10 7 4.6265 2.5687 1.9156 11 14 3.0188 0.9895 3.5272 12 1 1.6075 1.3768 3.2753 13 1 3.0906 -0.4679 3.8027 14 1 3.5368 1.7409 4.6987 15 7 3.8793 -1.7116 -0.0291 16 6 3.9213 -0.8782 -1.2501 17 6 3.4025 -1.7490 -2.4095 18 6 3.0381 -3.1055 -1.7637 19 1 3.8547 -3.8185 -1.8772 20 8 1.8325 -3.6263 -2.3274 21 6 2.8314 -2.7355 -0.2735 22 1 -0.3633 0.5137 0.8901 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3634 -1.0277 -0.0005 25 1 1.8933 -0.5138 -0.8901 26 1 1.8512 1.8946 0.9736 27 1 3.1111 1.4492 -0.2021 28 1 1.5211 2.0113 -0.7716 29 1 1.5635 -1.6987 1.3244 30 1 1.7996 -0.1308 2.1333 31 1 4.5131 3.2297 2.6165 32 1 3.2808 -0.0051 -1.1260 33 1 4.9455 -0.5620 -1.4488 34 1 2.5194 -1.2943 -2.8583 35 1 4.1814 -1.8828 -3.1601 36 1 1.8859 -3.8012 -3.2769 37 1 2.9875 -3.6056 0.3642 38 1 1.8383 -2.3148 -0.1157 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261120783.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:42 Heat of formation + Delta-G solvation = -12.533469 kcal Electronic energy + Delta-G solvation = -17840.003948 eV Core-core repulsion = 15297.891250 eV Total energy + Delta-G solvation = -2542.112699 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.83148 -36.73047 -34.27846 -32.56009 -31.00512 -28.55927 -27.17839 -26.14471 -24.92123 -22.08283 -20.55555 -19.42473 -19.41246 -17.04369 -16.38272 -15.60294 -15.49248 -14.29938 -13.85591 -13.59461 -13.42678 -12.93000 -12.74600 -12.50701 -12.37221 -11.85080 -11.61329 -11.39269 -10.96579 -10.86560 -10.65375 -10.60731 -10.38249 -10.15117 -10.01056 -9.93106 -9.60562 -9.51260 -9.15536 -8.89598 -8.35157 -7.31573 -6.11483 -4.00313 3.25117 3.37026 3.37139 4.32761 4.37620 4.92982 5.16674 5.18632 5.32742 5.43070 5.62456 5.71962 5.80665 5.82448 6.08134 6.12961 6.19513 6.28755 6.33708 6.36232 6.47998 6.49416 6.65309 6.70254 6.79074 6.87514 6.93252 6.98266 7.19694 7.32050 7.48114 7.78090 7.85428 7.91242 8.05551 8.55210 8.88263 9.50426 10.99819 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.032631 B = 0.011084 C = 0.010365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.864507 B = 2525.448837 C = 2700.769341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.098 4.098 3 C -0.151 4.151 4 C -0.151 4.151 5 C 0.171 3.829 6 H 0.044 0.956 7 C -0.507 4.507 8 H 0.088 0.912 9 C 0.079 3.921 10 N -0.893 5.893 11 Si 0.877 3.123 12 H -0.278 1.278 13 H -0.267 1.267 14 H -0.298 1.298 15 N -0.498 5.498 16 C 0.024 3.976 17 C -0.169 4.169 18 C 0.096 3.904 19 H 0.064 0.936 20 O -0.567 6.567 21 C 0.024 3.976 22 H 0.045 0.955 23 H 0.045 0.955 24 H 0.043 0.957 25 H 0.079 0.921 26 H 0.044 0.956 27 H 0.119 0.881 28 H 0.014 0.986 29 H 0.045 0.955 30 H 0.050 0.950 31 H 0.264 0.736 32 H 0.094 0.906 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.064 0.936 36 H 0.372 0.628 37 H 0.073 0.927 38 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.172 -7.523 -6.688 11.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.116 4.116 3 C -0.207 4.207 4 C -0.190 4.190 5 C 0.063 3.937 6 H 0.062 0.938 7 C -0.545 4.545 8 H 0.106 0.894 9 C -0.124 4.124 10 N -0.531 5.531 11 Si 0.708 3.292 12 H -0.205 1.205 13 H -0.193 1.193 14 H -0.226 1.226 15 N -0.223 5.223 16 C -0.103 4.103 17 C -0.207 4.207 18 C 0.037 3.963 19 H 0.082 0.918 20 O -0.372 6.372 21 C -0.104 4.104 22 H 0.064 0.936 23 H 0.064 0.936 24 H 0.062 0.938 25 H 0.097 0.903 26 H 0.063 0.937 27 H 0.137 0.863 28 H 0.033 0.967 29 H 0.063 0.937 30 H 0.068 0.932 31 H 0.074 0.926 32 H 0.111 0.889 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.082 0.918 36 H 0.219 0.781 37 H 0.091 0.909 38 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -4.823 -7.516 -5.863 10.683 hybrid contribution -1.253 0.282 0.314 1.322 sum -6.076 -7.233 -5.549 10.956 Atomic orbital electron populations 1.21918 0.97560 1.00286 1.00663 1.21342 0.93234 0.98376 0.98688 1.22505 1.05561 0.93124 0.99532 1.22621 1.00563 0.98055 0.97749 1.19975 0.89822 0.93921 0.89972 0.93842 1.20889 1.30955 0.95171 1.07458 0.89434 1.24801 0.95361 0.94823 0.97378 1.69862 1.43799 1.05291 1.34136 0.87058 0.80410 0.78731 0.83013 1.20513 1.19269 1.22605 1.64993 1.40915 1.12836 1.03539 1.23210 1.02047 0.97168 0.87872 1.23233 1.01074 0.97044 0.99379 1.22795 0.85738 0.93396 0.94350 0.91838 1.86496 1.37014 1.86657 1.27022 1.23397 0.97252 0.96877 0.92919 0.93627 0.93562 0.93762 0.90349 0.93693 0.86324 0.96706 0.93685 0.93181 0.92596 0.88859 0.91231 0.91281 0.91752 0.78136 0.90871 0.91054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.58 9.16 37.16 0.34 -2.24 16 2 C -0.10 -1.96 1.70 -90.62 -0.15 -2.11 16 3 C -0.15 -3.31 6.92 37.15 0.26 -3.05 16 4 C -0.15 -3.24 3.58 -26.73 -0.10 -3.34 16 5 C 0.17 3.94 2.43 -68.86 -0.17 3.77 16 6 H 0.04 1.07 7.20 -51.93 -0.37 0.70 16 7 C -0.51 -13.04 5.27 -34.44 -0.18 -13.23 16 8 H 0.09 2.42 6.00 -52.49 -0.32 2.10 16 9 C 0.08 2.12 3.70 -17.82 -0.07 2.06 16 10 N -0.89 -25.57 13.96 55.43 0.77 -24.79 16 11 Si 0.88 21.49 23.18 -169.99 -3.94 17.55 16 12 H -0.28 -6.72 6.86 56.52 0.39 -6.33 16 13 H -0.27 -6.39 6.53 56.52 0.37 -6.02 16 14 H -0.30 -7.42 7.11 56.52 0.40 -7.02 16 15 N -0.50 -10.18 5.48 -223.88 -1.23 -11.40 16 16 C 0.02 0.46 4.25 -2.76 -0.01 0.45 16 17 C -0.17 -2.57 6.17 -25.37 -0.16 -2.72 16 18 C 0.10 1.46 4.44 -24.87 -0.11 1.35 16 19 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 20 O -0.57 -7.94 13.40 -35.23 -0.47 -8.41 16 21 C 0.02 0.42 5.24 -1.90 -0.01 0.41 16 22 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 23 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 24 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.08 1.52 3.26 -51.93 -0.17 1.35 16 26 H 0.04 1.06 6.01 -51.93 -0.31 0.75 16 27 H 0.12 2.87 3.70 -51.93 -0.19 2.68 16 28 H 0.01 0.28 8.10 -51.93 -0.42 -0.14 16 29 H 0.04 0.90 6.07 -51.93 -0.32 0.58 16 30 H 0.05 1.15 3.20 -51.93 -0.17 0.98 16 31 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 32 H 0.09 1.90 2.57 -51.93 -0.13 1.77 16 33 H 0.07 1.38 7.66 -51.92 -0.40 0.98 16 34 H 0.07 1.02 7.82 -51.93 -0.41 0.61 16 35 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 36 H 0.37 3.42 9.11 45.56 0.42 3.84 16 37 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 38 H 0.07 1.34 4.22 -51.93 -0.22 1.12 16 LS Contribution 261.46 15.07 3.94 3.94 Total: -1.00 -28.13 261.46 -6.00 -34.13 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: -4.72 Total: 7.62 kcal Atomic # 6 Polarization: -18.28 SS G_CDS: -0.36 Total: -18.64 kcal Atomic # 7 Polarization: -35.74 SS G_CDS: -0.45 Total: -36.20 kcal Atomic # 8 Polarization: -7.94 SS G_CDS: -0.47 Total: -8.41 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -3.94 Total: 17.55 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -28.13 -6.00 -34.13 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261120783.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.600 kcal (2) G-P(sol) polarization free energy of solvation -28.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds