Wall clock time and date at job start Mon Mar 30 2020 03:04:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52994 * 109.47283 * 2 1 4 4 C 1.53001 * 109.47462 * 120.00405 * 2 1 3 5 5 C 1.53003 * 109.47427 * 171.91060 * 4 2 1 6 6 H 1.08995 * 109.47300 * 179.18577 * 5 4 2 7 7 C 1.50705 * 109.47270 * 59.18265 * 5 4 2 8 8 H 1.07996 * 120.00589 * 240.00439 * 7 5 4 9 9 C 1.37878 * 119.99311 * 60.00062 * 7 5 4 10 10 N 1.31514 * 119.99727 * 179.97438 * 9 7 5 11 11 Si 1.86803 * 120.00446 * 0.02562 * 9 7 5 12 12 H 1.48501 * 109.46936 * 269.99744 * 11 9 7 13 13 H 1.48493 * 109.46813 * 29.99875 * 11 9 7 14 14 H 1.48506 * 109.47045 * 149.99742 * 11 9 7 15 15 N 1.46906 * 109.46937 * 299.19013 * 5 4 2 16 16 C 1.47896 * 111.00235 * 83.19006 * 15 5 4 17 17 C 1.53993 * 107.05978 * 214.15386 * 16 15 5 18 18 C 1.54596 * 105.13741 * 1.23066 * 17 16 15 19 19 H 1.09002 * 110.72186 * 263.41790 * 18 17 16 20 20 O 1.42906 * 110.72392 * 140.31315 * 18 17 16 21 21 C 1.48537 * 110.99766 * 325.79495 * 15 5 4 22 22 H 1.09003 * 109.46877 * 299.99264 * 1 2 3 23 23 H 1.08994 * 109.47720 * 59.99926 * 1 2 3 24 24 H 1.09006 * 109.47212 * 179.97438 * 1 2 3 25 25 H 1.09007 * 109.47195 * 240.00341 * 2 1 3 26 26 H 1.08999 * 109.47533 * 71.34142 * 3 2 1 27 27 H 1.09001 * 109.47609 * 191.34039 * 3 2 1 28 28 H 1.09006 * 109.47200 * 311.34126 * 3 2 1 29 29 H 1.08993 * 109.47217 * 51.91061 * 4 2 1 30 30 H 1.09001 * 109.46658 * 291.91023 * 4 2 1 31 31 H 0.97006 * 120.00408 * 180.02562 * 10 9 7 32 32 H 1.09003 * 109.91856 * 333.51262 * 16 15 5 33 33 H 1.09008 * 109.91393 * 94.60554 * 16 15 5 34 34 H 1.09000 * 110.30710 * 120.14332 * 17 16 15 35 35 H 1.08996 * 110.31311 * 242.21336 * 17 16 15 36 36 H 0.96700 * 113.99476 * 61.45128 * 20 18 17 37 37 H 1.08998 * 110.66927 * 278.15791 * 21 15 5 38 38 H 1.09002 * 110.66333 * 41.28993 * 21 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5565 -0.8995 1.1518 6 1 3.9218 -1.4004 2.0482 7 6 4.2141 0.4508 1.0276 8 1 4.8119 0.6826 0.1586 9 6 4.0523 1.3904 2.0236 10 7 4.6265 2.5687 1.9156 11 14 3.0188 0.9895 3.5272 12 1 1.6075 1.3768 3.2753 13 1 3.0906 -0.4679 3.8027 14 1 3.5368 1.7409 4.6987 15 7 3.8793 -1.7116 -0.0291 16 6 3.9213 -0.8782 -1.2501 17 6 3.4025 -1.7490 -2.4095 18 6 3.0381 -3.1055 -1.7637 19 1 3.8547 -3.8185 -1.8772 20 8 1.8325 -3.6263 -2.3274 21 6 2.8314 -2.7355 -0.2735 22 1 -0.3633 0.5137 0.8901 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3634 -1.0277 -0.0005 25 1 1.8933 -0.5138 -0.8901 26 1 1.8512 1.8946 0.9736 27 1 3.1111 1.4492 -0.2021 28 1 1.5211 2.0113 -0.7716 29 1 1.5635 -1.6987 1.3244 30 1 1.7996 -0.1308 2.1333 31 1 4.5131 3.2297 2.6165 32 1 3.2808 -0.0051 -1.1260 33 1 4.9455 -0.5620 -1.4488 34 1 2.5194 -1.2943 -2.8583 35 1 4.1814 -1.8828 -3.1601 36 1 1.8859 -3.8012 -3.2769 37 1 2.9875 -3.6056 0.3642 38 1 1.8383 -2.3148 -0.1157 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261120783.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:42 Heat of formation + Delta-G solvation = -35.377499 kcal Electronic energy + Delta-G solvation = -17840.994540 eV Core-core repulsion = 15297.891250 eV Total energy + Delta-G solvation = -2543.103290 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.38373 -38.02668 -35.71204 -34.50162 -32.61775 -30.11390 -28.69845 -27.76524 -26.67906 -23.72036 -21.88800 -21.11011 -21.01093 -18.44596 -18.14764 -17.22576 -16.89412 -16.06897 -15.39351 -15.26957 -14.92649 -14.60127 -14.24348 -13.96789 -13.85959 -13.48158 -13.27999 -13.02912 -12.60239 -12.39514 -12.35346 -12.20272 -12.05740 -11.73820 -11.69715 -11.47514 -11.23043 -10.95434 -10.82663 -10.68787 -10.38880 -8.92766 -8.22283 -6.11034 1.27824 1.34801 1.40565 2.34116 3.09211 3.14564 3.60894 3.84592 3.95000 4.07553 4.15337 4.21453 4.24434 4.48906 4.66764 4.76186 4.79516 4.81654 4.82707 4.92401 4.97957 5.03789 5.12374 5.14511 5.18120 5.28899 5.31758 5.35665 5.49343 5.62222 5.62958 6.02290 6.11499 6.30197 6.62479 6.79980 6.97075 7.41716 8.92052 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.032631 B = 0.011084 C = 0.010365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.864507 B = 2525.448837 C = 2700.769341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.095 4.095 3 C -0.143 4.143 4 C -0.149 4.149 5 C 0.172 3.828 6 H 0.026 0.974 7 C -0.488 4.488 8 H 0.060 0.940 9 C 0.038 3.962 10 N -0.935 5.935 11 Si 0.919 3.081 12 H -0.273 1.273 13 H -0.258 1.258 14 H -0.305 1.305 15 N -0.510 5.510 16 C 0.021 3.979 17 C -0.158 4.158 18 C 0.110 3.890 19 H 0.078 0.922 20 O -0.575 6.575 21 C 0.018 3.982 22 H 0.039 0.961 23 H 0.063 0.937 24 H 0.060 0.940 25 H 0.088 0.912 26 H 0.020 0.980 27 H 0.091 0.909 28 H 0.031 0.969 29 H 0.065 0.935 30 H 0.034 0.966 31 H 0.262 0.738 32 H 0.078 0.922 33 H 0.050 0.950 34 H 0.078 0.922 35 H 0.087 0.913 36 H 0.396 0.604 37 H 0.078 0.922 38 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.790 -9.448 -7.950 14.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.113 4.113 3 C -0.199 4.199 4 C -0.187 4.187 5 C 0.063 3.937 6 H 0.044 0.956 7 C -0.526 4.526 8 H 0.078 0.922 9 C -0.160 4.160 10 N -0.575 5.575 11 Si 0.749 3.251 12 H -0.199 1.199 13 H -0.182 1.182 14 H -0.233 1.233 15 N -0.234 5.234 16 C -0.106 4.106 17 C -0.196 4.196 18 C 0.050 3.950 19 H 0.096 0.904 20 O -0.383 6.383 21 C -0.110 4.110 22 H 0.058 0.942 23 H 0.082 0.918 24 H 0.079 0.921 25 H 0.106 0.894 26 H 0.039 0.961 27 H 0.109 0.891 28 H 0.050 0.950 29 H 0.083 0.917 30 H 0.053 0.947 31 H 0.071 0.929 32 H 0.096 0.904 33 H 0.069 0.931 34 H 0.097 0.903 35 H 0.105 0.895 36 H 0.246 0.754 37 H 0.096 0.904 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -6.453 -9.472 -7.153 13.510 hybrid contribution -0.702 0.848 0.609 1.258 sum -7.155 -8.624 -6.543 12.976 Atomic orbital electron populations 1.21862 0.95210 1.01582 1.01305 1.21305 0.95154 0.96543 0.98249 1.22318 1.04070 0.94962 0.98566 1.22553 0.99238 0.99026 0.97886 1.19786 0.90780 0.92389 0.90714 0.95614 1.20985 1.29469 0.96280 1.05835 0.92196 1.25289 0.96463 0.94698 0.99555 1.69971 1.46068 1.06401 1.35075 0.86359 0.79492 0.78883 0.80357 1.19925 1.18224 1.23340 1.64871 1.42289 1.13076 1.03174 1.23154 1.00911 0.97492 0.89032 1.23164 1.02024 0.96278 0.98127 1.22555 0.86576 0.93554 0.92298 0.90450 1.86441 1.36184 1.86413 1.29242 1.23456 0.95972 0.96086 0.95503 0.94175 0.91826 0.92119 0.89410 0.96122 0.89092 0.94956 0.91709 0.94745 0.92885 0.90416 0.93106 0.90315 0.89466 0.75410 0.90360 0.91591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.55 9.16 71.98 0.66 -3.89 16 2 C -0.09 -3.59 1.70 -10.80 -0.02 -3.61 16 3 C -0.14 -6.21 6.92 71.98 0.50 -5.71 16 4 C -0.15 -6.15 3.58 30.60 0.11 -6.05 16 5 C 0.17 7.86 2.43 44.17 0.11 7.97 16 6 H 0.03 1.27 7.20 -2.39 -0.02 1.25 16 7 C -0.49 -25.66 5.27 25.60 0.13 -25.52 16 8 H 0.06 3.45 6.00 -2.91 -0.02 3.43 16 9 C 0.04 2.11 3.70 84.65 0.31 2.43 16 10 N -0.93 -55.33 13.96 21.45 0.30 -55.03 16 11 Si 0.92 44.70 23.18 68.60 1.59 46.29 16 12 H -0.27 -12.90 6.86 99.48 0.68 -12.22 16 13 H -0.26 -11.98 6.53 99.48 0.65 -11.33 16 14 H -0.31 -15.05 7.11 99.48 0.71 -14.34 16 15 N -0.51 -20.28 5.48 -862.21 -4.72 -25.01 16 16 C 0.02 0.80 4.25 86.45 0.37 1.17 16 17 C -0.16 -4.29 6.17 31.47 0.19 -4.09 16 18 C 0.11 2.92 4.44 31.80 0.14 3.06 16 19 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 20 O -0.57 -13.50 13.40 -148.98 -2.00 -15.50 16 21 C 0.02 0.59 5.24 86.65 0.45 1.04 16 22 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 23 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 24 H 0.06 1.74 8.14 -2.38 -0.02 1.72 16 25 H 0.09 3.20 3.26 -2.38 -0.01 3.19 16 26 H 0.02 0.96 6.01 -2.39 -0.01 0.94 16 27 H 0.09 4.50 3.70 -2.39 -0.01 4.49 16 28 H 0.03 1.24 8.10 -2.38 -0.02 1.22 16 29 H 0.06 2.43 6.07 -2.39 -0.01 2.41 16 30 H 0.03 1.54 3.20 -2.39 -0.01 1.53 16 31 H 0.26 14.90 8.31 -92.70 -0.77 14.13 16 32 H 0.08 3.14 2.57 -2.39 -0.01 3.13 16 33 H 0.05 2.04 7.66 -2.38 -0.02 2.02 16 34 H 0.08 2.01 7.82 -2.39 -0.02 2.00 16 35 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 36 H 0.40 5.34 9.11 -74.06 -0.67 4.67 16 37 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 38 H 0.07 2.27 4.22 -2.39 -0.01 2.26 16 Total: -1.00 -60.97 261.46 -1.55 -62.53 By element: Atomic # 1 Polarization: 19.61 SS G_CDS: 0.32 Total: 19.93 kcal Atomic # 6 Polarization: -36.17 SS G_CDS: 2.96 Total: -33.21 kcal Atomic # 7 Polarization: -75.62 SS G_CDS: -4.42 Total: -80.04 kcal Atomic # 8 Polarization: -13.50 SS G_CDS: -2.00 Total: -15.50 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 1.59 Total: 46.29 kcal Total: -60.97 -1.55 -62.53 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261120783.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.148 kcal (2) G-P(sol) polarization free energy of solvation -60.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds