Wall clock time and date at job start Mon Mar 30 2020 03:30:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47503 * 2 1 4 4 C 1.53002 * 109.47153 * 120.00257 * 2 1 3 5 5 H 1.08988 * 109.47401 * 57.49721 * 4 2 1 6 6 C 1.50706 * 109.46776 * 297.49519 * 4 2 1 7 7 H 1.07994 * 120.00394 * 295.06488 * 6 4 2 8 8 C 1.37879 * 119.99253 * 115.06532 * 6 4 2 9 9 N 1.31513 * 120.00651 * 6.51886 * 8 6 4 10 10 Si 1.86803 * 119.99481 * 186.52210 * 8 6 4 11 11 H 1.48498 * 109.47404 * 359.97438 * 10 8 6 12 12 H 1.48509 * 109.47229 * 119.99916 * 10 8 6 13 13 H 1.48501 * 109.47102 * 239.99771 * 10 8 6 14 14 N 1.46905 * 109.47112 * 177.50098 * 4 2 1 15 15 C 1.48664 * 111.10868 * 306.72731 * 14 4 2 16 16 C 1.54378 * 104.67420 * 201.10122 * 15 14 4 17 17 C 1.54259 * 105.05847 * 23.77168 * 16 15 14 18 18 C 1.48565 * 110.99524 * 191.30947 * 14 4 2 19 19 H 1.08996 * 110.41381 * 40.14380 * 18 14 4 20 20 C 1.52999 * 110.41126 * 277.81624 * 18 14 4 21 21 O 1.42904 * 109.47124 * 301.22883 * 20 18 14 22 22 H 1.08997 * 109.47092 * 306.42830 * 1 2 3 23 23 H 1.09000 * 109.47137 * 66.42845 * 1 2 3 24 24 H 1.08994 * 109.47361 * 186.43168 * 1 2 3 25 25 H 1.09006 * 109.47257 * 239.99848 * 2 1 3 26 26 H 1.09001 * 109.47303 * 176.17448 * 3 2 1 27 27 H 1.09004 * 109.47260 * 296.17543 * 3 2 1 28 28 H 1.08996 * 109.47200 * 56.17479 * 3 2 1 29 29 H 0.96998 * 119.99933 * 179.97438 * 9 8 6 30 30 H 1.09000 * 110.44538 * 82.25773 * 15 14 4 31 31 H 1.08999 * 110.40650 * 319.91926 * 15 14 4 32 32 H 1.09004 * 110.32543 * 264.87909 * 16 15 14 33 33 H 1.08997 * 110.32627 * 142.66663 * 16 15 14 34 34 H 1.09001 * 110.32477 * 241.10244 * 17 16 15 35 35 H 1.08998 * 110.41241 * 118.94254 * 17 16 15 36 36 H 1.09000 * 109.46899 * 181.22964 * 20 18 14 37 37 H 1.08997 * 109.46936 * 61.22829 * 20 18 14 38 38 H 0.96699 * 113.99308 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6405 -1.7351 1.2719 6 6 1.5889 0.0241 2.4789 7 1 1.9538 1.0225 2.6694 8 6 0.7104 -0.5689 3.3608 9 7 0.3658 -1.8277 3.1994 10 14 0.0094 0.4161 4.7849 11 1 0.5510 1.7983 4.7448 12 1 -1.4709 0.4606 4.6749 13 1 0.3914 -0.2276 6.0674 14 7 3.5078 -0.7738 1.2194 15 6 3.9968 -1.3585 -0.0570 16 6 5.4276 -1.8447 0.2584 17 6 5.4487 -2.0648 1.7851 18 6 4.0288 -1.6931 2.2637 19 1 3.4050 -2.5843 2.3314 20 6 4.0909 -0.9825 3.6173 21 8 4.9336 0.1670 3.5137 22 1 -0.3633 0.6102 0.8268 23 1 -0.3633 0.4110 -0.9419 24 1 -0.3634 -1.0211 0.1151 25 1 1.8933 -0.5139 -0.8900 26 1 3.1279 1.4432 0.0686 27 1 1.7338 1.9362 -0.9223 28 1 1.6219 1.9757 0.8537 29 1 -0.2520 -2.2449 3.8200 30 1 4.0167 -0.6005 -0.8400 31 1 3.3678 -2.1969 -0.3565 32 1 6.1566 -1.0853 -0.0247 33 1 5.6329 -2.7803 -0.2618 34 1 6.1880 -1.4135 2.2513 35 1 5.6650 -3.1078 2.0159 36 1 4.4952 -1.6630 4.3666 37 1 3.0881 -0.6726 3.9112 38 1 5.0196 0.6670 4.3369 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261149011.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:19 Heat of formation + Delta-G solvation = -54.438125 kcal Electronic energy + Delta-G solvation = -17600.023296 eV Core-core repulsion = 15056.093475 eV Total energy + Delta-G solvation = -2543.929821 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.56859 -35.60869 -34.70442 -32.20041 -30.06296 -29.11865 -26.05387 -25.93002 -24.18682 -22.56821 -20.54856 -19.05150 -18.26109 -16.68121 -16.06433 -14.91324 -14.77373 -14.46326 -13.69309 -13.39658 -13.01471 -12.51614 -12.48294 -12.12531 -11.99336 -11.55828 -11.34346 -11.05712 -10.96804 -10.80545 -10.60593 -10.54326 -10.00573 -9.94825 -9.84910 -9.73367 -9.72016 -9.13232 -9.01296 -8.71329 -8.33193 -7.05814 -6.02090 -3.99701 3.24023 3.34717 3.39345 4.38666 5.01268 5.24388 5.33020 5.49323 5.62015 5.75691 6.07116 6.15736 6.21887 6.25685 6.27264 6.38426 6.42168 6.47731 6.56607 6.62296 6.74465 6.77556 6.86409 6.99247 7.00477 7.06283 7.18669 7.31124 7.46802 7.48255 7.63080 7.90132 8.06329 8.38739 8.59788 8.71643 9.12537 9.57664 11.03467 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.022367 B = 0.013431 C = 0.010188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.564167 B = 2084.174328 C = 2747.715570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.081 4.081 3 C -0.124 4.124 4 C 0.185 3.815 5 H 0.042 0.958 6 C -0.470 4.470 7 H 0.062 0.938 8 C 0.061 3.939 9 N -0.895 5.895 10 Si 0.879 3.121 11 H -0.271 1.271 12 H -0.284 1.284 13 H -0.286 1.286 14 N -0.485 5.485 15 C 0.028 3.972 16 C -0.120 4.120 17 C -0.122 4.122 18 C 0.088 3.912 19 H 0.054 0.946 20 C 0.085 3.915 21 O -0.558 6.558 22 H 0.060 0.940 23 H 0.023 0.977 24 H 0.044 0.956 25 H 0.033 0.967 26 H 0.054 0.946 27 H 0.019 0.981 28 H 0.057 0.943 29 H 0.259 0.741 30 H 0.066 0.934 31 H 0.027 0.973 32 H 0.061 0.939 33 H 0.052 0.948 34 H 0.072 0.928 35 H 0.049 0.951 36 H 0.013 0.987 37 H 0.089 0.911 38 H 0.357 0.643 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.483 0.413 -2.135 5.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.100 4.100 3 C -0.181 4.181 4 C 0.079 3.921 5 H 0.060 0.940 6 C -0.510 4.510 7 H 0.080 0.920 8 C -0.140 4.140 9 N -0.534 5.534 10 Si 0.707 3.293 11 H -0.195 1.195 12 H -0.210 1.210 13 H -0.213 1.213 14 N -0.210 5.210 15 C -0.100 4.100 16 C -0.158 4.158 17 C -0.160 4.160 18 C -0.021 4.021 19 H 0.072 0.928 20 C 0.008 3.992 21 O -0.361 6.361 22 H 0.079 0.921 23 H 0.043 0.957 24 H 0.064 0.936 25 H 0.051 0.949 26 H 0.073 0.927 27 H 0.038 0.962 28 H 0.076 0.924 29 H 0.069 0.931 30 H 0.084 0.916 31 H 0.045 0.955 32 H 0.079 0.921 33 H 0.070 0.930 34 H 0.091 0.909 35 H 0.068 0.932 36 H 0.031 0.969 37 H 0.107 0.893 38 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 5.581 0.605 -2.611 6.191 hybrid contribution -0.927 -0.342 1.302 1.634 sum 4.654 0.263 -1.309 4.841 Atomic orbital electron populations 1.21567 0.96180 1.01240 0.99068 1.21152 0.95001 0.96344 0.97539 1.21618 1.01101 0.96494 0.98932 1.19821 0.82344 0.96863 0.93059 0.94026 1.20952 1.23748 1.00878 1.05397 0.91994 1.24974 0.96827 0.94649 0.97548 1.69912 1.34966 1.10780 1.37743 0.86743 0.79245 0.80779 0.82538 1.19537 1.21027 1.21255 1.65691 1.13382 1.42967 0.98970 1.23048 0.94147 0.97082 0.95769 1.22227 0.97732 0.99606 0.96227 1.22332 0.98610 0.99487 0.95551 1.22277 0.93334 0.93748 0.92696 0.92788 1.22406 0.95897 0.85900 0.95033 1.86526 1.70475 1.41923 1.37129 0.92126 0.95749 0.93641 0.94878 0.92691 0.96237 0.92434 0.93075 0.91562 0.95512 0.92062 0.92957 0.90940 0.93210 0.96897 0.89289 0.79934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.60 8.86 37.16 0.33 -2.27 16 2 C -0.08 -1.75 2.35 -90.62 -0.21 -1.96 16 3 C -0.12 -2.54 8.71 37.16 0.32 -2.21 16 4 C 0.19 4.42 1.44 -68.86 -0.10 4.32 16 5 H 0.04 1.14 6.63 -51.94 -0.34 0.79 16 6 C -0.47 -11.90 3.96 -34.44 -0.14 -12.03 16 7 H 0.06 1.65 7.02 -52.49 -0.37 1.28 16 8 C 0.06 1.58 4.59 -17.82 -0.08 1.50 16 9 N -0.89 -24.21 12.62 55.43 0.70 -23.51 16 10 Si 0.88 20.36 29.54 -169.99 -5.02 15.34 16 11 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 13 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 14 N -0.48 -10.69 4.10 -215.52 -0.88 -11.58 16 15 C 0.03 0.54 5.06 -2.12 -0.01 0.53 16 16 C -0.12 -2.03 7.00 -25.35 -0.18 -2.21 16 17 C -0.12 -2.20 6.45 -25.35 -0.16 -2.36 16 18 C 0.09 1.89 2.63 -66.07 -0.17 1.71 16 19 H 0.05 1.27 7.80 -51.93 -0.40 0.87 16 20 C 0.09 1.78 6.45 37.16 0.24 2.02 16 21 O -0.56 -11.03 12.54 -35.23 -0.44 -11.47 16 22 H 0.06 1.36 7.52 -51.93 -0.39 0.97 16 23 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 24 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 25 H 0.03 0.69 6.68 -51.93 -0.35 0.34 16 26 H 0.05 1.15 7.57 -51.93 -0.39 0.76 16 27 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.06 1.24 6.85 -51.93 -0.36 0.89 16 29 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 30 H 0.07 1.24 7.63 -51.93 -0.40 0.84 16 31 H 0.03 0.53 7.98 -51.93 -0.41 0.12 16 32 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.07 1.33 7.12 -51.93 -0.37 0.96 16 35 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.01 0.25 8.14 -51.93 -0.42 -0.18 16 37 H 0.09 2.11 4.84 -51.93 -0.25 1.86 16 38 H 0.36 5.46 9.12 45.56 0.42 5.87 16 LS Contribution 289.68 15.07 4.37 4.37 Total: -1.00 -27.32 289.68 -7.16 -34.48 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: -5.71 Total: 5.34 kcal Atomic # 6 Polarization: -12.81 SS G_CDS: -0.16 Total: -12.97 kcal Atomic # 7 Polarization: -34.91 SS G_CDS: -0.18 Total: -35.09 kcal Atomic # 8 Polarization: -11.03 SS G_CDS: -0.44 Total: -11.47 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -27.32 -7.16 -34.48 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261149011.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.954 kcal (2) G-P(sol) polarization free energy of solvation -27.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds