Wall clock time and date at job start Mon Mar 30 2020 03:30:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47503 * 2 1 4 4 C 1.53002 * 109.47153 * 120.00257 * 2 1 3 5 5 H 1.08988 * 109.47401 * 57.49721 * 4 2 1 6 6 C 1.50706 * 109.46776 * 297.49519 * 4 2 1 7 7 H 1.07994 * 120.00394 * 295.06488 * 6 4 2 8 8 C 1.37879 * 119.99253 * 115.06532 * 6 4 2 9 9 N 1.31513 * 120.00651 * 6.51886 * 8 6 4 10 10 Si 1.86803 * 119.99481 * 186.52210 * 8 6 4 11 11 H 1.48498 * 109.47404 * 359.97438 * 10 8 6 12 12 H 1.48509 * 109.47229 * 119.99916 * 10 8 6 13 13 H 1.48501 * 109.47102 * 239.99771 * 10 8 6 14 14 N 1.46905 * 109.47112 * 177.50098 * 4 2 1 15 15 C 1.48664 * 111.10868 * 306.72731 * 14 4 2 16 16 C 1.54378 * 104.67420 * 201.10122 * 15 14 4 17 17 C 1.54259 * 105.05847 * 23.77168 * 16 15 14 18 18 C 1.48565 * 110.99524 * 191.30947 * 14 4 2 19 19 H 1.08996 * 110.41381 * 40.14380 * 18 14 4 20 20 C 1.52999 * 110.41126 * 277.81624 * 18 14 4 21 21 O 1.42904 * 109.47124 * 301.22883 * 20 18 14 22 22 H 1.08997 * 109.47092 * 306.42830 * 1 2 3 23 23 H 1.09000 * 109.47137 * 66.42845 * 1 2 3 24 24 H 1.08994 * 109.47361 * 186.43168 * 1 2 3 25 25 H 1.09006 * 109.47257 * 239.99848 * 2 1 3 26 26 H 1.09001 * 109.47303 * 176.17448 * 3 2 1 27 27 H 1.09004 * 109.47260 * 296.17543 * 3 2 1 28 28 H 1.08996 * 109.47200 * 56.17479 * 3 2 1 29 29 H 0.96998 * 119.99933 * 179.97438 * 9 8 6 30 30 H 1.09000 * 110.44538 * 82.25773 * 15 14 4 31 31 H 1.08999 * 110.40650 * 319.91926 * 15 14 4 32 32 H 1.09004 * 110.32543 * 264.87909 * 16 15 14 33 33 H 1.08997 * 110.32627 * 142.66663 * 16 15 14 34 34 H 1.09001 * 110.32477 * 241.10244 * 17 16 15 35 35 H 1.08998 * 110.41241 * 118.94254 * 17 16 15 36 36 H 1.09000 * 109.46899 * 181.22964 * 20 18 14 37 37 H 1.08997 * 109.46936 * 61.22829 * 20 18 14 38 38 H 0.96699 * 113.99308 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6405 -1.7351 1.2719 6 6 1.5889 0.0241 2.4789 7 1 1.9538 1.0225 2.6694 8 6 0.7104 -0.5689 3.3608 9 7 0.3658 -1.8277 3.1994 10 14 0.0094 0.4161 4.7849 11 1 0.5510 1.7983 4.7448 12 1 -1.4709 0.4606 4.6749 13 1 0.3914 -0.2276 6.0674 14 7 3.5078 -0.7738 1.2194 15 6 3.9968 -1.3585 -0.0570 16 6 5.4276 -1.8447 0.2584 17 6 5.4487 -2.0648 1.7851 18 6 4.0288 -1.6931 2.2637 19 1 3.4050 -2.5843 2.3314 20 6 4.0909 -0.9825 3.6173 21 8 4.9336 0.1670 3.5137 22 1 -0.3633 0.6102 0.8268 23 1 -0.3633 0.4110 -0.9419 24 1 -0.3634 -1.0211 0.1151 25 1 1.8933 -0.5139 -0.8900 26 1 3.1279 1.4432 0.0686 27 1 1.7338 1.9362 -0.9223 28 1 1.6219 1.9757 0.8537 29 1 -0.2520 -2.2449 3.8200 30 1 4.0167 -0.6005 -0.8400 31 1 3.3678 -2.1969 -0.3565 32 1 6.1566 -1.0853 -0.0247 33 1 5.6329 -2.7803 -0.2618 34 1 6.1880 -1.4135 2.2513 35 1 5.6650 -3.1078 2.0159 36 1 4.4952 -1.6630 4.3666 37 1 3.0881 -0.6726 3.9112 38 1 5.0196 0.6670 4.3369 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261149011.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:19 Heat of formation + Delta-G solvation = -73.101717 kcal Electronic energy + Delta-G solvation = -17600.832610 eV Core-core repulsion = 15056.093475 eV Total energy + Delta-G solvation = -2544.739135 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.22954 -37.27626 -36.34509 -34.14318 -31.69175 -30.72855 -27.91147 -27.67209 -25.81335 -24.37994 -22.10782 -20.69700 -20.02037 -18.40770 -17.90155 -16.69184 -16.32933 -16.22314 -15.38700 -15.15051 -14.70581 -14.24230 -14.13912 -13.79762 -13.54954 -13.24940 -13.16446 -12.83101 -12.69525 -12.47103 -12.36139 -12.05706 -11.82175 -11.71958 -11.45397 -11.35806 -11.24439 -10.98432 -10.75987 -10.57178 -10.19452 -8.85462 -8.01046 -6.02781 1.36827 1.43397 1.52189 2.45294 3.17255 3.58955 3.72984 3.95639 4.13154 4.27928 4.42097 4.54242 4.55412 4.62012 4.70840 4.79038 4.90535 4.98152 5.01148 5.04293 5.12939 5.17949 5.22039 5.31563 5.32972 5.40624 5.54531 5.60242 5.65330 5.72227 5.79326 5.87330 6.31046 6.51772 6.88688 7.09936 7.19765 7.56790 9.03715 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.022367 B = 0.013431 C = 0.010188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.564167 B = 2084.174328 C = 2747.715570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.083 4.083 3 C -0.112 4.112 4 C 0.191 3.809 5 H 0.001 0.999 6 C -0.460 4.460 7 H 0.047 0.953 8 C 0.025 3.975 9 N -0.924 5.924 10 Si 0.928 3.072 11 H -0.268 1.268 12 H -0.287 1.287 13 H -0.284 1.284 14 N -0.493 5.493 15 C 0.025 3.975 16 C -0.112 4.112 17 C -0.114 4.114 18 C 0.081 3.919 19 H 0.022 0.978 20 C 0.091 3.909 21 O -0.566 6.566 22 H 0.041 0.959 23 H 0.055 0.945 24 H 0.024 0.976 25 H 0.044 0.956 26 H 0.048 0.952 27 H 0.047 0.953 28 H 0.039 0.961 29 H 0.257 0.743 30 H 0.075 0.925 31 H 0.017 0.983 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.073 0.927 35 H 0.067 0.933 36 H 0.031 0.969 37 H 0.057 0.943 38 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.767 1.132 -2.866 7.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.102 4.102 3 C -0.169 4.169 4 C 0.085 3.915 5 H 0.019 0.981 6 C -0.499 4.499 7 H 0.065 0.935 8 C -0.173 4.173 9 N -0.565 5.565 10 Si 0.755 3.245 11 H -0.192 1.192 12 H -0.213 1.213 13 H -0.210 1.210 14 N -0.217 5.217 15 C -0.104 4.104 16 C -0.150 4.150 17 C -0.152 4.152 18 C -0.028 4.028 19 H 0.040 0.960 20 C 0.014 3.986 21 O -0.371 6.371 22 H 0.060 0.940 23 H 0.074 0.926 24 H 0.044 0.956 25 H 0.062 0.938 26 H 0.067 0.933 27 H 0.066 0.934 28 H 0.059 0.941 29 H 0.066 0.934 30 H 0.093 0.907 31 H 0.035 0.965 32 H 0.093 0.907 33 H 0.095 0.905 34 H 0.092 0.908 35 H 0.086 0.914 36 H 0.049 0.951 37 H 0.075 0.925 38 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 6.880 1.346 -3.332 7.762 hybrid contribution -1.289 -0.553 1.511 2.062 sum 5.591 0.793 -1.821 5.933 Atomic orbital electron populations 1.21476 0.95983 0.99804 0.99973 1.21152 0.95182 0.97102 0.96785 1.21471 1.00435 0.95381 0.99614 1.19643 0.83586 0.94632 0.93687 0.98141 1.20913 1.23225 0.99965 1.05794 0.93454 1.25442 0.97313 0.95161 0.99395 1.70035 1.35832 1.11995 1.38646 0.85970 0.78311 0.79774 0.80432 1.19200 1.21289 1.21045 1.65621 1.11903 1.43633 1.00567 1.23129 0.95573 0.96975 0.94689 1.22218 0.96084 1.01209 0.95456 1.22279 0.96003 1.00592 0.96322 1.22307 0.94909 0.92537 0.93085 0.95970 1.22157 0.94564 0.86623 0.95297 1.86461 1.69833 1.41804 1.38960 0.93963 0.92574 0.95630 0.93772 0.93295 0.93421 0.94138 0.93409 0.90662 0.96479 0.90744 0.90452 0.90808 0.91400 0.95111 0.92498 0.77641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.81 8.86 71.98 0.64 -4.17 16 2 C -0.08 -3.52 2.35 -10.80 -0.03 -3.55 16 3 C -0.11 -4.38 8.71 71.98 0.63 -3.75 16 4 C 0.19 9.25 1.44 44.17 0.06 9.32 16 5 H 0.00 0.04 6.63 -2.39 -0.02 0.02 16 6 C -0.46 -23.62 3.96 25.60 0.10 -23.52 16 7 H 0.05 2.55 7.02 -2.91 -0.02 2.53 16 8 C 0.03 1.32 4.59 84.66 0.39 1.71 16 9 N -0.92 -51.58 12.62 21.45 0.27 -51.31 16 10 Si 0.93 42.37 29.54 68.60 2.03 44.39 16 11 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 12 H -0.29 -13.13 7.11 99.48 0.71 -12.43 16 13 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 14 N -0.49 -21.52 4.10 -835.78 -3.43 -24.95 16 15 C 0.02 0.92 5.06 86.43 0.44 1.35 16 16 C -0.11 -3.46 7.00 31.49 0.22 -3.24 16 17 C -0.11 -3.87 6.45 31.49 0.20 -3.67 16 18 C 0.08 3.43 2.63 45.06 0.12 3.55 16 19 H 0.02 1.08 7.80 -2.39 -0.02 1.06 16 20 C 0.09 3.80 6.45 71.98 0.46 4.26 16 21 O -0.57 -21.53 12.54 -148.98 -1.87 -23.40 16 22 H 0.04 1.89 7.52 -2.39 -0.02 1.88 16 23 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 24 H 0.02 1.13 8.14 -2.39 -0.02 1.11 16 25 H 0.04 1.77 6.68 -2.38 -0.02 1.76 16 26 H 0.05 1.96 7.57 -2.39 -0.02 1.94 16 27 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 28 H 0.04 1.70 6.85 -2.39 -0.02 1.69 16 29 H 0.26 13.86 8.31 -92.71 -0.77 13.09 16 30 H 0.08 2.65 7.63 -2.39 -0.02 2.63 16 31 H 0.02 0.66 7.98 -2.39 -0.02 0.64 16 32 H 0.07 2.13 8.14 -2.38 -0.02 2.12 16 33 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 34 H 0.07 2.50 7.12 -2.39 -0.02 2.49 16 35 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 36 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.06 2.74 4.84 -2.39 -0.01 2.73 16 38 H 0.38 10.89 9.12 -74.06 -0.68 10.21 16 Total: -1.00 -58.78 289.68 0.59 -58.19 By element: Atomic # 1 Polarization: 18.44 SS G_CDS: 0.35 Total: 18.79 kcal Atomic # 6 Polarization: -24.95 SS G_CDS: 3.24 Total: -21.71 kcal Atomic # 7 Polarization: -73.11 SS G_CDS: -3.16 Total: -76.26 kcal Atomic # 8 Polarization: -21.53 SS G_CDS: -1.87 Total: -23.40 kcal Atomic # 14 Polarization: 42.37 SS G_CDS: 2.03 Total: 44.39 kcal Total: -58.78 0.59 -58.19 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261149011.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.907 kcal (2) G-P(sol) polarization free energy of solvation -58.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds