Wall clock time and date at job start Mon Mar 30 2020 02:56:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.47108 * 2 1 4 4 C 1.50702 * 109.46592 * 54.81007 * 3 2 1 5 5 H 1.07999 * 119.99849 * 239.99484 * 4 3 2 6 6 C 1.37876 * 120.00323 * 60.00391 * 4 3 2 7 7 N 1.31520 * 119.99690 * 359.97438 * 6 4 3 8 8 Si 1.86794 * 120.00280 * 179.97438 * 6 4 3 9 9 H 1.48508 * 109.46991 * 59.99918 * 8 6 4 10 10 H 1.48499 * 109.47184 * 179.97438 * 8 6 4 11 11 H 1.48497 * 109.47396 * 299.99872 * 8 6 4 12 12 C 1.52999 * 109.47327 * 174.80716 * 3 2 1 13 13 C 1.53005 * 109.47157 * 186.80460 * 12 3 2 14 14 N 1.46898 * 109.47096 * 294.81441 * 3 2 1 15 15 C 1.47025 * 110.99717 * 157.71284 * 14 3 2 16 16 C 1.53097 * 109.25402 * 182.34553 * 15 14 3 17 17 O 1.43017 * 109.29721 * 303.21906 * 16 15 14 18 18 C 1.43017 * 113.73588 * 58.64575 * 17 16 15 19 19 C 1.47015 * 110.99746 * 281.38809 * 14 3 2 20 20 H 1.09002 * 109.47151 * 293.92173 * 1 2 3 21 21 H 1.09002 * 109.47336 * 53.93163 * 1 2 3 22 22 H 1.09008 * 109.46916 * 173.93087 * 1 2 3 23 23 H 1.09006 * 109.47251 * 240.00521 * 2 1 3 24 24 H 1.08999 * 109.47696 * 120.00121 * 2 1 3 25 25 H 0.97001 * 120.00058 * 180.02562 * 7 6 4 26 26 H 1.08997 * 109.47165 * 306.80592 * 12 3 2 27 27 H 1.09006 * 109.46999 * 66.80642 * 12 3 2 28 28 H 1.08994 * 109.47014 * 149.57913 * 13 12 3 29 29 H 1.09002 * 109.46940 * 269.57832 * 13 12 3 30 30 H 1.09001 * 109.47020 * 29.57924 * 13 12 3 31 31 H 1.09003 * 109.47042 * 62.43397 * 15 14 3 32 32 H 1.08999 * 109.54462 * 302.30209 * 15 14 3 33 33 H 1.08999 * 109.50736 * 183.26201 * 16 15 14 34 34 H 1.09002 * 109.50353 * 63.17489 * 16 15 14 35 35 H 1.09001 * 109.50566 * 61.27050 * 18 17 16 36 36 H 1.09006 * 109.50209 * 181.35575 * 18 17 16 37 37 H 1.09005 * 109.50498 * 57.67896 * 19 14 3 38 38 H 1.09000 * 109.50995 * 297.54881 * 19 14 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4354 2.1890 1.1612 5 1 0.8263 3.0629 0.9831 6 6 1.6598 1.7563 2.4509 7 7 2.4012 0.6919 2.6678 8 14 0.9110 2.6820 3.8903 9 1 -0.5687 2.6805 3.7638 10 1 1.2994 2.0190 5.1611 11 1 1.4064 4.0819 3.8902 12 6 3.5644 1.4446 0.1306 13 6 4.0597 2.8821 0.3011 14 7 1.6552 2.0979 -1.2571 15 6 1.6384 3.5602 -1.1052 16 6 1.1769 4.1989 -2.4178 17 8 2.0371 3.7737 -3.4783 18 6 2.0760 2.3549 -3.6543 19 6 2.5477 1.6976 -2.3546 20 1 -0.3633 0.4167 0.9394 21 1 -0.3634 0.6050 -0.8307 22 1 -0.3633 -1.0220 -0.1087 23 1 1.8933 -0.5138 -0.8901 24 1 1.8934 -0.5138 0.8899 25 1 2.5589 0.3873 3.5751 26 1 3.8554 0.8545 0.9995 27 1 4.0065 1.0120 -0.7670 28 1 4.9682 2.8843 0.9032 29 1 4.2717 3.3119 -0.6780 30 1 3.2921 3.4742 0.7994 31 1 2.6411 3.9118 -0.8621 32 1 0.9514 3.8358 -0.3051 33 1 1.2182 5.2844 -2.3287 34 1 0.1539 3.8900 -2.6329 35 1 1.0793 1.9918 -3.9051 36 1 2.7671 2.1070 -4.4600 37 1 2.5243 0.6135 -2.4657 38 1 3.5651 2.0195 -2.1322 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261152601.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:45 Heat of formation + Delta-G solvation = -27.950871 kcal Electronic energy + Delta-G solvation = -17873.491714 eV Core-core repulsion = 15330.710467 eV Total energy + Delta-G solvation = -2542.781247 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.35617 -36.74337 -32.84289 -31.13368 -30.54971 -30.48624 -26.83460 -25.45266 -24.30801 -22.65762 -20.63434 -20.02009 -18.62757 -16.34188 -15.67206 -15.41880 -14.69419 -14.32001 -14.14818 -13.93212 -13.55403 -13.06113 -12.14095 -11.90253 -11.80120 -11.76468 -11.44997 -11.11784 -10.90496 -10.84169 -10.66599 -10.55114 -10.19147 -9.92719 -9.83534 -9.55865 -9.42169 -9.36686 -8.83255 -8.53328 -8.34941 -6.98625 -6.00658 -4.05914 3.27992 3.33516 3.36129 4.33977 4.37790 4.97149 5.27476 5.58552 5.65473 5.76922 5.87005 5.93286 6.12251 6.17787 6.28037 6.34483 6.48847 6.55039 6.64345 6.66955 6.75560 6.77539 6.89089 6.98885 7.21330 7.36202 7.45178 7.52098 7.61600 7.69082 7.72815 7.80143 7.87079 8.12262 8.43417 8.63365 8.96888 9.57497 11.01933 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.030575 B = 0.010887 C = 0.010272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.546683 B = 2571.365985 C = 2725.171443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.095 4.095 3 C 0.240 3.760 4 C -0.499 4.499 5 H 0.065 0.935 6 C 0.069 3.931 7 N -0.883 5.883 8 Si 0.887 3.113 9 H -0.278 1.278 10 H -0.289 1.289 11 H -0.279 1.279 12 C -0.141 4.141 13 C -0.138 4.138 14 N -0.522 5.522 15 C 0.009 3.991 16 C 0.060 3.940 17 O -0.396 6.396 18 C 0.066 3.934 19 C 0.014 3.986 20 H 0.054 0.946 21 H 0.044 0.956 22 H 0.012 0.988 23 H 0.011 0.989 24 H 0.086 0.914 25 H 0.259 0.741 26 H 0.090 0.910 27 H 0.020 0.980 28 H 0.024 0.976 29 H 0.024 0.976 30 H 0.076 0.924 31 H 0.053 0.947 32 H 0.097 0.903 33 H 0.083 0.917 34 H 0.048 0.952 35 H 0.049 0.951 36 H 0.083 0.917 37 H 0.073 0.927 38 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.441 2.219 -6.600 6.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.134 4.134 3 C 0.153 3.847 4 C -0.537 4.537 5 H 0.083 0.917 6 C -0.133 4.133 7 N -0.521 5.521 8 Si 0.715 3.285 9 H -0.203 1.203 10 H -0.214 1.214 11 H -0.204 1.204 12 C -0.180 4.180 13 C -0.195 4.195 14 N -0.247 5.247 15 C -0.119 4.119 16 C -0.017 4.017 17 O -0.315 6.315 18 C -0.011 4.011 19 C -0.115 4.115 20 H 0.073 0.927 21 H 0.063 0.937 22 H 0.031 0.969 23 H 0.029 0.971 24 H 0.105 0.895 25 H 0.070 0.930 26 H 0.108 0.892 27 H 0.039 0.961 28 H 0.043 0.957 29 H 0.043 0.957 30 H 0.095 0.905 31 H 0.071 0.929 32 H 0.115 0.885 33 H 0.101 0.899 34 H 0.066 0.934 35 H 0.068 0.932 36 H 0.101 0.899 37 H 0.091 0.909 38 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -0.748 2.073 -6.664 7.019 hybrid contribution 0.355 0.444 1.251 1.374 sum -0.393 2.517 -5.413 5.982 Atomic orbital electron populations 1.21445 0.97419 0.97076 1.01660 1.21415 0.95037 0.97506 0.99400 1.18760 0.89708 0.91527 0.84737 1.21108 1.30770 1.12022 0.89836 0.91707 1.24816 0.95067 0.94944 0.98495 1.69819 1.38171 1.23496 1.20653 0.86737 0.79734 0.79983 0.82034 1.20323 1.21446 1.20439 1.22119 0.99279 0.96165 1.00428 1.21947 1.00144 0.99201 0.98230 1.62469 1.49659 1.05835 1.06691 1.23085 1.02299 0.89895 0.96651 1.22789 0.93204 0.98375 0.87355 1.87869 1.67565 1.22229 1.53835 1.22625 1.00455 0.81071 0.96993 1.22743 0.96112 1.00080 0.92545 0.92718 0.93653 0.96880 0.97062 0.89528 0.93038 0.89172 0.96099 0.95697 0.95688 0.90483 0.92912 0.88539 0.89862 0.93378 0.93222 0.89913 0.90890 0.94039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.59 9.41 37.16 0.35 -2.24 16 2 C -0.10 -2.19 4.78 -26.73 -0.13 -2.32 16 3 C 0.24 5.46 0.14 -132.75 -0.02 5.44 16 4 C -0.50 -12.22 4.25 -34.44 -0.15 -12.37 16 5 H 0.07 1.60 5.23 -52.49 -0.27 1.33 16 6 C 0.07 1.74 5.11 -17.82 -0.09 1.65 16 7 N -0.88 -23.05 9.49 55.43 0.53 -22.53 16 8 Si 0.89 20.26 29.54 -169.99 -5.02 15.23 16 9 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 10 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 12 C -0.14 -3.20 4.17 -26.73 -0.11 -3.31 16 13 C -0.14 -2.97 8.06 37.16 0.30 -2.68 16 14 N -0.52 -10.68 3.89 -219.98 -0.86 -11.54 16 15 C 0.01 0.17 4.46 -3.71 -0.02 0.15 16 16 C 0.06 1.00 7.01 37.21 0.26 1.27 16 17 O -0.40 -7.03 10.83 -35.23 -0.38 -7.41 16 18 C 0.07 1.07 7.01 37.21 0.26 1.33 16 19 C 0.01 0.26 4.42 -3.71 -0.02 0.24 16 20 H 0.05 1.28 7.28 -51.93 -0.38 0.90 16 21 H 0.04 0.97 7.60 -51.93 -0.39 0.57 16 22 H 0.01 0.24 8.14 -51.92 -0.42 -0.18 16 23 H 0.01 0.24 6.91 -51.93 -0.36 -0.12 16 24 H 0.09 2.20 6.23 -51.93 -0.32 1.87 16 25 H 0.26 6.65 8.31 -40.82 -0.34 6.31 16 26 H 0.09 2.29 6.28 -51.93 -0.33 1.96 16 27 H 0.02 0.45 5.97 -51.93 -0.31 0.14 16 28 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.02 0.50 6.10 -51.93 -0.32 0.18 16 30 H 0.08 1.76 5.29 -51.93 -0.27 1.49 16 31 H 0.05 1.07 4.25 -51.93 -0.22 0.85 16 32 H 0.10 1.97 5.43 -51.93 -0.28 1.69 16 33 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.07 1.33 6.90 -51.93 -0.36 0.97 16 38 H 0.04 0.81 5.26 -51.93 -0.27 0.54 16 LS Contribution 269.75 15.07 4.07 4.07 Total: -1.00 -25.58 269.75 -6.79 -32.36 By element: Atomic # 1 Polarization: 8.41 SS G_CDS: -5.76 Total: 2.65 kcal Atomic # 6 Polarization: -13.48 SS G_CDS: 0.64 Total: -12.84 kcal Atomic # 7 Polarization: -33.73 SS G_CDS: -0.33 Total: -34.06 kcal Atomic # 8 Polarization: -7.03 SS G_CDS: -0.38 Total: -7.41 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.23 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -25.58 -6.79 -32.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261152601.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.412 kcal (2) G-P(sol) polarization free energy of solvation -25.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds