Wall clock time and date at job start Mon Mar 30 2020 02:56:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.47108 * 2 1 4 4 C 1.50702 * 109.46592 * 54.81007 * 3 2 1 5 5 H 1.07999 * 119.99849 * 239.99484 * 4 3 2 6 6 C 1.37876 * 120.00323 * 60.00391 * 4 3 2 7 7 N 1.31520 * 119.99690 * 359.97438 * 6 4 3 8 8 Si 1.86794 * 120.00280 * 179.97438 * 6 4 3 9 9 H 1.48508 * 109.46991 * 59.99918 * 8 6 4 10 10 H 1.48499 * 109.47184 * 179.97438 * 8 6 4 11 11 H 1.48497 * 109.47396 * 299.99872 * 8 6 4 12 12 C 1.52999 * 109.47327 * 174.80716 * 3 2 1 13 13 C 1.53005 * 109.47157 * 186.80460 * 12 3 2 14 14 N 1.46898 * 109.47096 * 294.81441 * 3 2 1 15 15 C 1.47025 * 110.99717 * 157.71284 * 14 3 2 16 16 C 1.53097 * 109.25402 * 182.34553 * 15 14 3 17 17 O 1.43017 * 109.29721 * 303.21906 * 16 15 14 18 18 C 1.43017 * 113.73588 * 58.64575 * 17 16 15 19 19 C 1.47015 * 110.99746 * 281.38809 * 14 3 2 20 20 H 1.09002 * 109.47151 * 293.92173 * 1 2 3 21 21 H 1.09002 * 109.47336 * 53.93163 * 1 2 3 22 22 H 1.09008 * 109.46916 * 173.93087 * 1 2 3 23 23 H 1.09006 * 109.47251 * 240.00521 * 2 1 3 24 24 H 1.08999 * 109.47696 * 120.00121 * 2 1 3 25 25 H 0.97001 * 120.00058 * 180.02562 * 7 6 4 26 26 H 1.08997 * 109.47165 * 306.80592 * 12 3 2 27 27 H 1.09006 * 109.46999 * 66.80642 * 12 3 2 28 28 H 1.08994 * 109.47014 * 149.57913 * 13 12 3 29 29 H 1.09002 * 109.46940 * 269.57832 * 13 12 3 30 30 H 1.09001 * 109.47020 * 29.57924 * 13 12 3 31 31 H 1.09003 * 109.47042 * 62.43397 * 15 14 3 32 32 H 1.08999 * 109.54462 * 302.30209 * 15 14 3 33 33 H 1.08999 * 109.50736 * 183.26201 * 16 15 14 34 34 H 1.09002 * 109.50353 * 63.17489 * 16 15 14 35 35 H 1.09001 * 109.50566 * 61.27050 * 18 17 16 36 36 H 1.09006 * 109.50209 * 181.35575 * 18 17 16 37 37 H 1.09005 * 109.50498 * 57.67896 * 19 14 3 38 38 H 1.09000 * 109.50995 * 297.54881 * 19 14 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4354 2.1890 1.1612 5 1 0.8263 3.0629 0.9831 6 6 1.6598 1.7563 2.4509 7 7 2.4012 0.6919 2.6678 8 14 0.9110 2.6820 3.8903 9 1 -0.5687 2.6805 3.7638 10 1 1.2994 2.0190 5.1611 11 1 1.4064 4.0819 3.8902 12 6 3.5644 1.4446 0.1306 13 6 4.0597 2.8821 0.3011 14 7 1.6552 2.0979 -1.2571 15 6 1.6384 3.5602 -1.1052 16 6 1.1769 4.1989 -2.4178 17 8 2.0371 3.7737 -3.4783 18 6 2.0760 2.3549 -3.6543 19 6 2.5477 1.6976 -2.3546 20 1 -0.3633 0.4167 0.9394 21 1 -0.3634 0.6050 -0.8307 22 1 -0.3633 -1.0220 -0.1087 23 1 1.8933 -0.5138 -0.8901 24 1 1.8934 -0.5138 0.8899 25 1 2.5589 0.3873 3.5751 26 1 3.8554 0.8545 0.9995 27 1 4.0065 1.0120 -0.7670 28 1 4.9682 2.8843 0.9032 29 1 4.2717 3.3119 -0.6780 30 1 3.2921 3.4742 0.7994 31 1 2.6411 3.9118 -0.8621 32 1 0.9514 3.8358 -0.3051 33 1 1.2182 5.2844 -2.3287 34 1 0.1539 3.8900 -2.6329 35 1 1.0793 1.9918 -3.9051 36 1 2.7671 2.1070 -4.4600 37 1 2.5243 0.6135 -2.4657 38 1 3.5651 2.0195 -2.1322 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261152601.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:45 Heat of formation + Delta-G solvation = -43.308041 kcal Electronic energy + Delta-G solvation = -17874.157651 eV Core-core repulsion = 15330.710467 eV Total energy + Delta-G solvation = -2543.447184 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.91371 -38.29829 -34.59617 -32.89512 -32.30372 -31.96976 -28.51420 -27.20174 -25.90877 -24.22383 -22.44147 -21.54640 -20.36201 -18.02582 -17.43580 -16.78699 -16.32195 -15.84711 -15.73521 -15.52773 -15.26831 -14.80009 -13.83732 -13.71008 -13.45865 -13.41008 -13.08045 -12.80351 -12.73439 -12.44008 -12.37955 -12.13543 -11.94643 -11.71289 -11.50767 -11.23103 -11.13930 -11.10988 -10.42456 -10.29884 -10.24160 -8.63570 -7.93916 -6.02497 1.44249 1.47406 1.51022 2.48299 3.04831 3.31049 3.44212 4.20297 4.32351 4.37240 4.40578 4.51396 4.57783 4.60681 4.75057 4.79579 4.85715 4.87438 4.97895 5.03880 5.06869 5.14088 5.20201 5.27272 5.41059 5.61003 5.66215 5.69942 5.81254 5.91932 5.95820 6.01271 6.29632 6.35684 6.58755 6.89643 7.08921 7.63090 9.06481 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.030575 B = 0.010887 C = 0.010272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.546683 B = 2571.365985 C = 2725.171443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.094 4.094 3 C 0.240 3.760 4 C -0.497 4.497 5 H 0.061 0.939 6 C 0.032 3.968 7 N -0.903 5.903 8 Si 0.932 3.068 9 H -0.277 1.277 10 H -0.293 1.293 11 H -0.276 1.276 12 C -0.136 4.136 13 C -0.126 4.126 14 N -0.526 5.526 15 C 0.010 3.990 16 C 0.066 3.934 17 O -0.404 6.404 18 C 0.069 3.931 19 C 0.014 3.986 20 H 0.031 0.969 21 H 0.049 0.951 22 H 0.030 0.970 23 H 0.020 0.980 24 H 0.059 0.941 25 H 0.254 0.746 26 H 0.061 0.939 27 H 0.029 0.971 28 H 0.025 0.975 29 H 0.038 0.962 30 H 0.061 0.939 31 H 0.042 0.958 32 H 0.082 0.918 33 H 0.107 0.893 34 H 0.054 0.946 35 H 0.057 0.943 36 H 0.111 0.889 37 H 0.074 0.926 38 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.825 2.888 -8.041 8.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.132 4.132 3 C 0.151 3.849 4 C -0.535 4.535 5 H 0.079 0.921 6 C -0.168 4.168 7 N -0.542 5.542 8 Si 0.760 3.240 9 H -0.203 1.203 10 H -0.220 1.220 11 H -0.202 1.202 12 C -0.175 4.175 13 C -0.183 4.183 14 N -0.251 5.251 15 C -0.118 4.118 16 C -0.011 4.011 17 O -0.323 6.323 18 C -0.008 4.008 19 C -0.114 4.114 20 H 0.050 0.950 21 H 0.068 0.932 22 H 0.049 0.951 23 H 0.039 0.961 24 H 0.078 0.922 25 H 0.064 0.936 26 H 0.079 0.921 27 H 0.048 0.952 28 H 0.045 0.955 29 H 0.056 0.944 30 H 0.080 0.920 31 H 0.060 0.940 32 H 0.100 0.900 33 H 0.125 0.875 34 H 0.072 0.928 35 H 0.075 0.925 36 H 0.129 0.871 37 H 0.093 0.907 38 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -1.139 2.752 -8.117 8.646 hybrid contribution 0.485 0.222 1.662 1.746 sum -0.653 2.974 -6.455 7.137 Atomic orbital electron populations 1.21305 0.96487 0.98120 1.00497 1.21336 0.95795 0.97607 0.98484 1.18652 0.89356 0.91390 0.85487 1.21299 1.30044 1.11679 0.90478 0.92092 1.25316 0.95651 0.95579 1.00252 1.69952 1.39285 1.24517 1.20437 0.86027 0.79019 0.79095 0.79904 1.20297 1.21957 1.20207 1.22029 0.99637 0.96439 0.99433 1.21802 0.99545 0.98184 0.98768 1.62417 1.50138 1.06424 1.06088 1.23044 1.01426 0.89331 0.97979 1.22794 0.93189 0.99521 0.85603 1.87871 1.67749 1.22975 1.53739 1.22723 1.01585 0.80186 0.96282 1.22800 0.95215 1.00449 0.92978 0.94958 0.93214 0.95065 0.96100 0.92223 0.93600 0.92080 0.95221 0.95542 0.94355 0.92014 0.93953 0.89951 0.87549 0.92781 0.92490 0.87105 0.90749 0.95107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.55 9.41 71.98 0.68 -3.87 16 2 C -0.09 -4.27 4.78 30.59 0.15 -4.12 16 3 C 0.24 10.76 0.14 2.78 0.00 10.76 16 4 C -0.50 -24.28 4.25 25.60 0.11 -24.17 16 5 H 0.06 3.00 5.23 -2.91 -0.02 2.99 16 6 C 0.03 1.60 5.11 84.65 0.43 2.04 16 7 N -0.90 -47.87 9.49 21.45 0.20 -47.67 16 8 Si 0.93 41.70 29.54 68.60 2.03 43.72 16 9 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 10 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 11 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 12 C -0.14 -6.16 4.17 30.60 0.13 -6.03 16 13 C -0.13 -5.34 8.06 71.98 0.58 -4.76 16 14 N -0.53 -20.75 3.89 -849.89 -3.31 -24.06 16 15 C 0.01 0.38 4.46 86.31 0.39 0.76 16 16 C 0.07 2.03 7.01 72.01 0.50 2.53 16 17 O -0.40 -13.04 10.83 -148.98 -1.61 -14.65 16 18 C 0.07 2.01 7.01 72.01 0.50 2.52 16 19 C 0.01 0.49 4.42 86.31 0.38 0.87 16 20 H 0.03 1.49 7.28 -2.39 -0.02 1.47 16 21 H 0.05 2.04 7.60 -2.39 -0.02 2.02 16 22 H 0.03 1.18 8.14 -2.38 -0.02 1.16 16 23 H 0.02 0.88 6.91 -2.38 -0.02 0.86 16 24 H 0.06 3.06 6.23 -2.39 -0.01 3.04 16 25 H 0.25 13.30 8.31 -92.71 -0.77 12.53 16 26 H 0.06 3.14 6.28 -2.39 -0.02 3.12 16 27 H 0.03 1.26 5.97 -2.38 -0.01 1.24 16 28 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.04 1.49 6.10 -2.39 -0.01 1.48 16 30 H 0.06 2.80 5.29 -2.39 -0.01 2.79 16 31 H 0.04 1.66 4.25 -2.39 -0.01 1.65 16 32 H 0.08 3.29 5.43 -2.39 -0.01 3.28 16 33 H 0.11 2.79 8.14 -2.39 -0.02 2.77 16 34 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.11 2.63 8.14 -2.38 -0.02 2.61 16 37 H 0.07 2.55 6.90 -2.38 -0.02 2.54 16 38 H 0.03 1.14 5.26 -2.39 -0.01 1.13 16 Total: -1.00 -53.09 269.75 2.20 -50.88 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: 1.04 Total: 15.25 kcal Atomic # 6 Polarization: -27.32 SS G_CDS: 3.85 Total: -23.47 kcal Atomic # 7 Polarization: -68.63 SS G_CDS: -3.10 Total: -71.73 kcal Atomic # 8 Polarization: -13.04 SS G_CDS: -1.61 Total: -14.65 kcal Atomic # 14 Polarization: 41.70 SS G_CDS: 2.03 Total: 43.72 kcal Total: -53.09 2.20 -50.88 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261152601.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.577 kcal (2) G-P(sol) polarization free energy of solvation -53.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds