Wall clock time and date at job start Mon Mar 30 2020 03:30:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.46849 * 2 1 4 4 C 1.52999 * 109.46902 * 119.99901 * 2 1 3 5 5 H 1.09008 * 109.47092 * 304.40707 * 4 2 1 6 6 C 1.50696 * 109.47267 * 64.40982 * 4 2 1 7 7 H 1.07998 * 120.00169 * 54.88041 * 6 4 2 8 8 C 1.37882 * 119.99875 * 234.88379 * 6 4 2 9 9 N 1.31510 * 120.00137 * 5.13641 * 8 6 4 10 10 Si 1.86799 * 119.99962 * 185.13410 * 8 6 4 11 11 H 1.48499 * 109.47128 * 59.99901 * 10 8 6 12 12 H 1.48495 * 109.47337 * 180.02562 * 10 8 6 13 13 H 1.48508 * 109.47136 * 300.00000 * 10 8 6 14 14 N 1.46898 * 109.46857 * 184.40929 * 4 2 1 15 15 C 1.46845 * 111.00135 * 299.21032 * 14 4 2 16 16 C 1.53040 * 109.52422 * 174.16397 * 15 14 4 17 17 C 1.53122 * 109.27894 * 59.17689 * 16 15 14 18 18 C 1.53119 * 109.15946 * 302.34586 * 17 16 15 19 19 H 1.08998 * 109.53466 * 297.69483 * 18 17 16 20 20 O 1.42904 * 109.50253 * 177.59704 * 18 17 16 21 21 C 1.46851 * 111.00056 * 174.99812 * 14 4 2 22 22 H 1.08998 * 109.47731 * 294.91039 * 1 2 3 23 23 H 1.09003 * 109.47141 * 54.91304 * 1 2 3 24 24 H 1.09007 * 109.47251 * 174.90938 * 1 2 3 25 25 H 1.08999 * 109.47241 * 240.00162 * 2 1 3 26 26 H 1.08994 * 109.47243 * 179.97438 * 3 2 1 27 27 H 1.08998 * 109.47245 * 300.00180 * 3 2 1 28 28 H 1.09007 * 109.47330 * 59.99966 * 3 2 1 29 29 H 0.96998 * 120.00261 * 180.02562 * 9 8 6 30 30 H 1.09007 * 109.45630 * 294.17567 * 15 14 4 31 31 H 1.08997 * 109.46109 * 54.15498 * 15 14 4 32 32 H 1.08999 * 109.50211 * 179.11894 * 16 15 14 33 33 H 1.09000 * 109.50001 * 299.23823 * 16 15 14 34 34 H 1.09003 * 109.51886 * 182.44047 * 17 16 15 35 35 H 1.08995 * 109.52168 * 62.24863 * 17 16 15 36 36 H 0.96698 * 114.00052 * 60.19691 * 20 18 17 37 37 H 1.08996 * 109.45914 * 65.82176 * 21 14 4 38 38 H 1.08999 * 109.45223 * 305.85127 * 21 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6135 -0.2550 2.1375 6 6 1.6288 -2.1700 1.1959 7 1 1.8899 -2.7743 0.3397 8 6 0.9192 -2.7242 2.2402 9 7 0.5138 -1.9660 3.2353 10 14 0.5338 -4.5520 2.2416 11 1 1.8014 -5.3252 2.2189 12 1 -0.2340 -4.8951 3.4654 13 1 -0.2730 -4.8887 1.0410 14 7 3.5051 -0.6297 1.3037 15 6 4.1161 -1.2655 0.1295 16 6 5.6274 -1.0250 0.1460 17 6 6.2183 -1.6098 1.4318 18 6 5.5310 -0.9659 2.6390 19 1 5.7278 0.1062 2.6416 20 8 6.0375 -1.5468 3.8424 21 6 4.0226 -1.2082 2.5503 22 1 -0.3634 0.4328 0.9320 23 1 -0.3633 0.5907 -0.8409 24 1 -0.3634 -1.0237 -0.0912 25 1 1.8934 -0.5138 -0.8900 26 1 3.1299 1.4426 0.0005 27 1 1.6766 1.9563 -0.8899 28 1 1.6766 1.9564 0.8900 29 1 0.0149 -2.3558 3.9701 30 1 3.9186 -2.3373 0.1530 31 1 3.6902 -0.8376 -0.7780 32 1 6.0825 -1.5103 -0.7173 33 1 5.8257 0.0462 0.1086 34 1 7.2879 -1.4026 1.4682 35 1 6.0542 -2.6871 1.4510 36 1 6.9898 -1.4311 3.9645 37 1 3.8256 -2.2801 2.5624 38 1 3.5286 -0.7385 3.4009 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261152921.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:28 Heat of formation + Delta-G solvation = -86.567919 kcal Electronic energy + Delta-G solvation = -17316.740126 eV Core-core repulsion = 14771.417053 eV Total energy + Delta-G solvation = -2545.323073 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.29224 -37.97084 -35.77164 -34.32229 -32.74399 -30.47200 -28.55584 -27.46981 -25.60006 -23.66491 -23.31279 -20.78197 -20.13344 -18.48852 -18.07502 -16.91789 -16.46786 -15.73086 -15.41115 -15.11508 -14.80815 -14.68357 -14.34313 -13.84687 -13.57244 -13.39403 -13.03453 -12.92584 -12.88999 -12.67613 -12.42502 -12.27242 -11.86560 -11.79445 -11.64411 -11.53597 -11.11627 -11.01419 -10.84352 -10.62040 -10.50928 -8.88893 -8.05998 -6.23030 1.32100 1.34467 1.40042 2.37485 3.00470 3.25985 3.87049 3.92969 4.09270 4.21936 4.36334 4.42569 4.53780 4.65056 4.66937 4.74060 4.98015 5.02045 5.06191 5.08271 5.12440 5.14174 5.21287 5.28105 5.30656 5.32135 5.50703 5.53696 5.63541 5.68045 5.81056 5.90420 6.27666 6.48588 6.78341 7.00119 7.00632 7.45211 8.91599 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.019378 B = 0.012652 C = 0.009177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.581982 B = 2212.505629 C = 3050.363467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.078 4.078 3 C -0.125 4.125 4 C 0.200 3.800 5 H 0.039 0.961 6 C -0.535 4.535 7 H 0.041 0.959 8 C 0.032 3.968 9 N -0.914 5.914 10 Si 0.930 3.070 11 H -0.280 1.280 12 H -0.285 1.285 13 H -0.269 1.269 14 N -0.522 5.522 15 C 0.054 3.946 16 C -0.106 4.106 17 C -0.140 4.140 18 C 0.112 3.888 19 H 0.069 0.931 20 O -0.589 6.589 21 C 0.090 3.910 22 H 0.029 0.971 23 H 0.060 0.940 24 H 0.034 0.966 25 H 0.052 0.948 26 H 0.061 0.939 27 H 0.055 0.945 28 H 0.033 0.967 29 H 0.260 0.740 30 H 0.007 0.993 31 H 0.073 0.927 32 H 0.083 0.917 33 H 0.078 0.922 34 H 0.093 0.907 35 H 0.046 0.954 36 H 0.394 0.606 37 H 0.003 0.997 38 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.785 3.738 -5.560 11.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.097 4.097 3 C -0.182 4.182 4 C 0.093 3.907 5 H 0.057 0.943 6 C -0.574 4.574 7 H 0.060 0.940 8 C -0.168 4.168 9 N -0.554 5.554 10 Si 0.757 3.243 11 H -0.206 1.206 12 H -0.211 1.211 13 H -0.194 1.194 14 N -0.246 5.246 15 C -0.074 4.074 16 C -0.143 4.143 17 C -0.178 4.178 18 C 0.053 3.947 19 H 0.086 0.914 20 O -0.397 6.397 21 C -0.039 4.039 22 H 0.048 0.952 23 H 0.078 0.922 24 H 0.053 0.947 25 H 0.070 0.930 26 H 0.080 0.920 27 H 0.074 0.926 28 H 0.053 0.947 29 H 0.069 0.931 30 H 0.025 0.975 31 H 0.091 0.909 32 H 0.102 0.898 33 H 0.097 0.903 34 H 0.112 0.888 35 H 0.065 0.935 36 H 0.243 0.757 37 H 0.021 0.979 38 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 9.192 4.076 -5.313 11.373 hybrid contribution -0.442 -2.089 0.491 2.191 sum 8.750 1.987 -4.822 10.186 Atomic orbital electron populations 1.21487 0.96084 1.00195 0.99667 1.21087 0.95023 0.95860 0.97772 1.21649 1.01406 0.95103 1.00030 1.19445 0.83319 0.92962 0.94947 0.94280 1.21693 1.34904 0.97675 1.03164 0.94039 1.25527 0.95291 1.00454 0.95543 1.69985 1.38465 1.36262 1.10650 0.86049 0.78078 0.82648 0.77574 1.20606 1.21098 1.19390 1.62514 1.08103 1.53681 1.00350 1.22017 0.95082 0.96116 0.94220 1.21537 0.93703 1.01991 0.97116 1.22214 1.00765 0.99753 0.95095 1.21766 0.92734 0.96390 0.83805 0.91353 1.86488 1.29434 1.81378 1.42381 1.21327 0.93166 0.96336 0.93040 0.95215 0.92153 0.94713 0.93004 0.91979 0.92592 0.94743 0.93094 0.97450 0.90894 0.89849 0.90322 0.88817 0.93505 0.75660 0.97910 0.94835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.81 8.91 71.98 0.64 -4.16 16 2 C -0.08 -3.23 2.00 -10.79 -0.02 -3.25 16 3 C -0.12 -4.34 8.99 71.98 0.65 -3.69 16 4 C 0.20 9.74 1.67 44.17 0.07 9.81 16 5 H 0.04 2.24 6.86 -2.38 -0.02 2.23 16 6 C -0.53 -28.76 5.41 25.60 0.14 -28.62 16 7 H 0.04 2.26 7.08 -2.91 -0.02 2.24 16 8 C 0.03 1.81 5.45 84.66 0.46 2.27 16 9 N -0.91 -53.67 12.62 21.45 0.27 -53.40 16 10 Si 0.93 44.78 29.54 68.60 2.03 46.81 16 11 H -0.28 -13.51 7.11 99.48 0.71 -12.80 16 12 H -0.29 -13.59 7.11 99.48 0.71 -12.89 16 13 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 14 N -0.52 -22.40 3.69 -875.51 -3.23 -25.63 16 15 C 0.05 2.02 4.72 86.33 0.41 2.42 16 16 C -0.11 -2.95 6.09 30.65 0.19 -2.76 16 17 C -0.14 -3.96 5.63 30.67 0.17 -3.79 16 18 C 0.11 3.82 3.63 30.64 0.11 3.93 16 19 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 20 O -0.59 -19.44 13.32 -148.98 -1.98 -21.43 16 21 C 0.09 4.12 4.78 86.32 0.41 4.53 16 22 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 23 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 24 H 0.03 1.55 7.53 -2.38 -0.02 1.54 16 25 H 0.05 2.10 6.53 -2.39 -0.02 2.08 16 26 H 0.06 2.10 7.45 -2.39 -0.02 2.08 16 27 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 28 H 0.03 1.25 8.14 -2.38 -0.02 1.23 16 29 H 0.26 14.76 8.31 -92.71 -0.77 13.99 16 30 H 0.01 0.31 6.88 -2.38 -0.02 0.29 16 31 H 0.07 2.60 6.12 -2.39 -0.01 2.59 16 32 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.08 2.00 8.14 -2.39 -0.02 1.99 16 34 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 35 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.39 8.08 9.08 -74.06 -0.67 7.41 16 37 H 0.00 0.14 7.44 -2.39 -0.02 0.12 16 38 H 0.03 1.72 8.08 -2.39 -0.02 1.70 16 Total: -1.00 -63.26 292.43 0.66 -62.61 By element: Atomic # 1 Polarization: 14.02 SS G_CDS: 0.35 Total: 14.36 kcal Atomic # 6 Polarization: -26.55 SS G_CDS: 3.23 Total: -23.32 kcal Atomic # 7 Polarization: -76.07 SS G_CDS: -2.96 Total: -79.03 kcal Atomic # 8 Polarization: -19.44 SS G_CDS: -1.98 Total: -21.43 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Total: -63.26 0.66 -62.61 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261152921.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.962 kcal (2) G-P(sol) polarization free energy of solvation -63.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds