Wall clock time and date at job start Mon Mar 30 2020 03:32:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47134 * 2 1 4 4 C 1.53008 * 109.46909 * 240.00416 * 2 1 3 5 5 H 1.08995 * 109.46919 * 179.97438 * 4 2 1 6 6 O 1.42904 * 109.46796 * 59.99765 * 4 2 1 7 7 C 1.53004 * 109.47019 * 300.00077 * 4 2 1 8 8 N 1.46900 * 109.46691 * 185.00139 * 7 4 2 9 9 C 1.46901 * 110.99663 * 189.99751 * 8 7 4 10 10 C 1.50703 * 109.47259 * 159.86328 * 9 8 7 11 11 H 1.08003 * 119.99665 * 354.20247 * 10 9 8 12 12 C 1.37874 * 120.00226 * 174.19654 * 10 9 8 13 13 N 1.31523 * 119.99850 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99913 * 180.02562 * 12 10 9 15 15 H 1.48494 * 109.47017 * 359.97438 * 14 12 10 16 16 H 1.48504 * 109.46997 * 120.00319 * 14 12 10 17 17 H 1.48498 * 109.46922 * 239.99663 * 14 12 10 18 18 C 1.46895 * 111.00181 * 66.04400 * 8 7 4 19 19 C 1.52998 * 117.49964 * 262.02958 * 18 8 7 20 20 C 1.53003 * 117.49811 * 193.36826 * 18 8 7 21 21 H 1.09000 * 109.46718 * 179.97438 * 1 2 3 22 22 H 1.08991 * 109.47111 * 59.99921 * 1 2 3 23 23 H 1.08998 * 109.46649 * 299.99550 * 1 2 3 24 24 H 1.08995 * 109.47457 * 120.00733 * 2 1 3 25 25 H 1.09007 * 109.46760 * 60.00464 * 3 2 1 26 26 H 1.09002 * 109.47212 * 180.02562 * 3 2 1 27 27 H 1.09003 * 109.47201 * 300.00739 * 3 2 1 28 28 H 0.96691 * 114.00145 * 299.99535 * 6 4 2 29 29 H 1.08996 * 109.46709 * 304.99498 * 7 4 2 30 30 H 1.08987 * 109.47115 * 64.99928 * 7 4 2 31 31 H 1.09003 * 109.47208 * 279.86398 * 9 8 7 32 32 H 1.08999 * 109.47312 * 39.86239 * 9 8 7 33 33 H 0.96998 * 119.99602 * 180.02562 * 13 12 10 34 34 H 1.09005 * 115.55417 * 47.70333 * 18 8 7 35 35 H 1.08997 * 117.49972 * 359.97438 * 19 18 8 36 36 H 1.08997 * 117.50140 * 145.02581 * 19 18 8 37 37 H 1.09003 * 117.49887 * 214.97802 * 20 18 8 38 38 H 1.09001 * 117.50194 * 359.97438 * 20 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2494 5 1 3.1300 -0.7208 -1.2496 6 8 1.5636 -0.0474 -2.4161 7 6 1.5299 -2.1637 -1.2494 8 7 2.1157 -2.8900 -2.3840 9 6 1.4738 -4.1998 -2.5585 10 6 1.7177 -4.6961 -3.9604 11 1 2.2105 -4.0596 -4.6804 12 6 1.3119 -5.9627 -4.3237 13 7 0.7115 -6.7377 -3.4469 14 14 1.6150 -6.5780 -6.0612 15 1 2.3016 -5.5220 -6.8476 16 1 2.4666 -7.7937 -6.0143 17 1 0.3170 -6.9075 -6.7030 18 6 3.5689 -3.0331 -2.2238 19 6 4.4626 -2.0320 -2.9586 20 6 4.3736 -3.4805 -3.4458 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3632 0.5138 0.8900 24 1 1.8934 -0.5139 0.8899 25 1 1.6767 1.9563 0.8901 26 1 3.1301 1.4425 -0.0005 27 1 1.6766 1.9564 -0.8899 28 1 0.5997 -0.0093 -2.4822 29 1 1.8184 -2.6511 -0.3182 30 1 0.4438 -2.1650 -1.3390 31 1 1.8934 -4.9082 -1.8441 32 1 0.4014 -4.1045 -2.3883 33 1 0.4264 -7.6289 -3.7025 34 1 3.9021 -3.3824 -1.2465 35 1 3.9723 -1.2675 -3.5612 36 1 5.3839 -1.7229 -2.4649 37 1 5.2365 -4.1236 -3.2723 38 1 3.8248 -3.6690 -4.3685 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000300918449.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:11 Heat of formation + Delta-G solvation = -31.925478 kcal Electronic energy + Delta-G solvation = -16676.976025 eV Core-core repulsion = 14134.022426 eV Total energy + Delta-G solvation = -2542.953599 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -38.74524 -36.86919 -33.48795 -33.44948 -32.25188 -28.54922 -27.19700 -25.88576 -22.63786 -22.18848 -21.50815 -19.75468 -19.37534 -16.68770 -16.09098 -15.47956 -14.93194 -14.67257 -14.39588 -14.08704 -13.85082 -12.93796 -12.73688 -12.34135 -12.10325 -12.05604 -11.82262 -11.39526 -11.24020 -11.00540 -10.86257 -10.80828 -10.72931 -10.55436 -10.28706 -9.97143 -9.50547 -9.41718 -9.09415 -8.95191 -8.36401 -7.19034 -5.97684 -3.97037 3.33407 3.40998 3.46013 4.41992 4.60840 4.66600 4.89658 4.98300 5.07242 5.13448 5.37351 5.53081 5.65083 5.67094 5.73759 5.79681 5.83811 5.89411 5.93525 6.04923 6.14644 6.22722 6.26108 6.28700 6.37081 6.43451 6.59260 6.83026 7.10979 7.24050 7.41708 7.90878 8.07317 8.17775 8.28051 8.60289 9.10284 9.65705 11.13072 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.035468 B = 0.007056 C = 0.006434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.244207 B = 3967.037358 C = 4350.780930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.131 4.131 3 C -0.140 4.140 4 C 0.118 3.882 5 H 0.097 0.903 6 O -0.546 6.546 7 C 0.028 3.972 8 N -0.500 5.500 9 C 0.194 3.806 10 C -0.493 4.493 11 H 0.068 0.932 12 C 0.052 3.948 13 N -0.902 5.902 14 Si 0.894 3.106 15 H -0.271 1.271 16 H -0.286 1.286 17 H -0.285 1.285 18 C 0.023 3.977 19 C -0.184 4.184 20 C -0.156 4.156 21 H 0.060 0.940 22 H 0.056 0.944 23 H 0.053 0.947 24 H 0.072 0.928 25 H 0.047 0.953 26 H 0.051 0.949 27 H 0.061 0.939 28 H 0.365 0.635 29 H 0.026 0.974 30 H 0.072 0.928 31 H -0.004 1.004 32 H 0.022 0.978 33 H 0.259 0.741 34 H 0.065 0.935 35 H 0.098 0.902 36 H 0.076 0.924 37 H 0.078 0.922 38 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.386 11.962 6.339 13.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.150 4.150 3 C -0.197 4.197 4 C 0.059 3.941 5 H 0.115 0.885 6 O -0.351 6.351 7 C -0.101 4.101 8 N -0.224 5.224 9 C 0.070 3.930 10 C -0.532 4.532 11 H 0.086 0.914 12 C -0.149 4.149 13 N -0.543 5.543 14 Si 0.722 3.278 15 H -0.196 1.196 16 H -0.212 1.212 17 H -0.212 1.212 18 C -0.086 4.086 19 C -0.221 4.221 20 C -0.193 4.193 21 H 0.079 0.921 22 H 0.075 0.925 23 H 0.072 0.928 24 H 0.090 0.910 25 H 0.066 0.934 26 H 0.070 0.930 27 H 0.080 0.920 28 H 0.212 0.788 29 H 0.044 0.956 30 H 0.090 0.910 31 H 0.014 0.986 32 H 0.040 0.960 33 H 0.068 0.932 34 H 0.082 0.918 35 H 0.116 0.884 36 H 0.094 0.906 37 H 0.096 0.904 38 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 2.849 12.110 5.814 13.732 hybrid contribution -0.386 -1.200 0.175 1.273 sum 2.464 10.910 5.988 12.687 Atomic orbital electron populations 1.21895 0.95271 1.02205 1.01684 1.21837 0.96429 0.97227 0.99548 1.21725 1.00762 0.95717 1.01489 1.21939 0.99093 0.89634 0.83483 0.88517 1.86560 1.25957 1.78593 1.43967 1.22796 0.99677 0.94567 0.93082 1.61862 1.00525 1.22319 1.37735 1.19727 0.93437 0.82754 0.97108 1.21271 1.37030 0.98576 0.96288 0.91358 1.24992 0.95648 0.96859 0.97351 1.69974 1.41005 1.09137 1.34178 0.86499 0.77831 0.78707 0.84764 1.19599 1.21204 1.21162 1.22052 0.88257 1.03594 0.94692 1.23069 0.99986 0.94088 1.05001 1.23107 1.00618 0.95148 1.00426 0.92057 0.92461 0.92811 0.90957 0.93352 0.92976 0.92024 0.78793 0.95628 0.90986 0.98613 0.96006 0.93150 0.91768 0.88390 0.90561 0.90375 0.86497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 8.54 37.16 0.32 -1.35 16 2 C -0.13 -1.56 2.81 -90.61 -0.25 -1.82 16 3 C -0.14 -1.51 9.05 37.16 0.34 -1.18 16 4 C 0.12 1.76 2.64 -26.73 -0.07 1.69 16 5 H 0.10 1.53 6.29 -51.93 -0.33 1.21 16 6 O -0.55 -8.63 12.57 -35.23 -0.44 -9.08 16 7 C 0.03 0.49 4.07 -3.82 -0.02 0.48 16 8 N -0.50 -10.82 4.52 -228.08 -1.03 -11.85 16 9 C 0.19 5.07 4.77 -4.97 -0.02 5.05 16 10 C -0.49 -13.74 7.82 -34.44 -0.27 -14.01 16 11 H 0.07 1.90 5.78 -52.48 -0.30 1.60 16 12 C 0.05 1.47 5.46 -17.82 -0.10 1.37 16 13 N -0.90 -26.93 13.29 55.43 0.74 -26.20 16 14 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 16 15 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 16 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 17 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 18 C 0.02 0.47 4.18 -67.71 -0.28 0.19 16 19 C -0.18 -3.22 9.16 -26.69 -0.24 -3.47 16 20 C -0.16 -3.10 9.48 -26.69 -0.25 -3.35 16 21 H 0.06 0.71 6.54 -51.93 -0.34 0.37 16 22 H 0.06 0.58 6.78 -51.93 -0.35 0.23 16 23 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 24 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 25 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 26 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.06 0.70 7.68 -51.93 -0.40 0.30 16 28 H 0.37 4.89 7.33 45.56 0.33 5.23 16 29 H 0.03 0.45 8.12 -51.93 -0.42 0.03 16 30 H 0.07 1.27 6.39 -51.94 -0.33 0.93 16 31 H 0.00 -0.11 7.99 -51.93 -0.42 -0.53 16 32 H 0.02 0.60 7.73 -51.93 -0.40 0.20 16 33 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 34 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 35 H 0.10 1.83 8.14 -51.93 -0.42 1.40 16 36 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 37 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 38 H 0.12 2.63 5.45 -51.93 -0.28 2.34 16 LS Contribution 298.73 15.07 4.50 4.50 Total: -1.00 -29.96 298.73 -7.87 -37.83 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: -5.76 Total: 4.43 kcal Atomic # 6 Polarization: -15.54 SS G_CDS: -0.86 Total: -16.40 kcal Atomic # 7 Polarization: -37.75 SS G_CDS: -0.29 Total: -38.05 kcal Atomic # 8 Polarization: -8.63 SS G_CDS: -0.44 Total: -9.08 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -29.96 -7.87 -37.83 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300918449.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.909 kcal (2) G-P(sol) polarization free energy of solvation -29.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds