Wall clock time and date at job start Mon Mar 30 2020 03:32:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47134 * 2 1 4 4 C 1.53008 * 109.46909 * 240.00416 * 2 1 3 5 5 H 1.08995 * 109.46919 * 179.97438 * 4 2 1 6 6 O 1.42904 * 109.46796 * 59.99765 * 4 2 1 7 7 C 1.53004 * 109.47019 * 300.00077 * 4 2 1 8 8 N 1.46900 * 109.46691 * 185.00139 * 7 4 2 9 9 C 1.46901 * 110.99663 * 189.99751 * 8 7 4 10 10 C 1.50703 * 109.47259 * 159.86328 * 9 8 7 11 11 H 1.08003 * 119.99665 * 354.20247 * 10 9 8 12 12 C 1.37874 * 120.00226 * 174.19654 * 10 9 8 13 13 N 1.31523 * 119.99850 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99913 * 180.02562 * 12 10 9 15 15 H 1.48494 * 109.47017 * 359.97438 * 14 12 10 16 16 H 1.48504 * 109.46997 * 120.00319 * 14 12 10 17 17 H 1.48498 * 109.46922 * 239.99663 * 14 12 10 18 18 C 1.46895 * 111.00181 * 66.04400 * 8 7 4 19 19 C 1.52998 * 117.49964 * 262.02958 * 18 8 7 20 20 C 1.53003 * 117.49811 * 193.36826 * 18 8 7 21 21 H 1.09000 * 109.46718 * 179.97438 * 1 2 3 22 22 H 1.08991 * 109.47111 * 59.99921 * 1 2 3 23 23 H 1.08998 * 109.46649 * 299.99550 * 1 2 3 24 24 H 1.08995 * 109.47457 * 120.00733 * 2 1 3 25 25 H 1.09007 * 109.46760 * 60.00464 * 3 2 1 26 26 H 1.09002 * 109.47212 * 180.02562 * 3 2 1 27 27 H 1.09003 * 109.47201 * 300.00739 * 3 2 1 28 28 H 0.96691 * 114.00145 * 299.99535 * 6 4 2 29 29 H 1.08996 * 109.46709 * 304.99498 * 7 4 2 30 30 H 1.08987 * 109.47115 * 64.99928 * 7 4 2 31 31 H 1.09003 * 109.47208 * 279.86398 * 9 8 7 32 32 H 1.08999 * 109.47312 * 39.86239 * 9 8 7 33 33 H 0.96998 * 119.99602 * 180.02562 * 13 12 10 34 34 H 1.09005 * 115.55417 * 47.70333 * 18 8 7 35 35 H 1.08997 * 117.49972 * 359.97438 * 19 18 8 36 36 H 1.08997 * 117.50140 * 145.02581 * 19 18 8 37 37 H 1.09003 * 117.49887 * 214.97802 * 20 18 8 38 38 H 1.09001 * 117.50194 * 359.97438 * 20 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2494 5 1 3.1300 -0.7208 -1.2496 6 8 1.5636 -0.0474 -2.4161 7 6 1.5299 -2.1637 -1.2494 8 7 2.1157 -2.8900 -2.3840 9 6 1.4738 -4.1998 -2.5585 10 6 1.7177 -4.6961 -3.9604 11 1 2.2105 -4.0596 -4.6804 12 6 1.3119 -5.9627 -4.3237 13 7 0.7115 -6.7377 -3.4469 14 14 1.6150 -6.5780 -6.0612 15 1 2.3016 -5.5220 -6.8476 16 1 2.4666 -7.7937 -6.0143 17 1 0.3170 -6.9075 -6.7030 18 6 3.5689 -3.0331 -2.2238 19 6 4.4626 -2.0320 -2.9586 20 6 4.3736 -3.4805 -3.4458 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3632 0.5138 0.8900 24 1 1.8934 -0.5139 0.8899 25 1 1.6767 1.9563 0.8901 26 1 3.1301 1.4425 -0.0005 27 1 1.6766 1.9564 -0.8899 28 1 0.5997 -0.0093 -2.4822 29 1 1.8184 -2.6511 -0.3182 30 1 0.4438 -2.1650 -1.3390 31 1 1.8934 -4.9082 -1.8441 32 1 0.4014 -4.1045 -2.3883 33 1 0.4264 -7.6289 -3.7025 34 1 3.9021 -3.3824 -1.2465 35 1 3.9723 -1.2675 -3.5612 36 1 5.3839 -1.7229 -2.4649 37 1 5.2365 -4.1236 -3.2723 38 1 3.8248 -3.6690 -4.3685 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000300918449.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:10 Heat of formation + Delta-G solvation = -52.643874 kcal Electronic energy + Delta-G solvation = -16677.874442 eV Core-core repulsion = 14134.022426 eV Total energy + Delta-G solvation = -2543.852016 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.10424 -38.30801 -35.30616 -34.56036 -34.16425 -30.24881 -28.11514 -27.60935 -24.19943 -23.94777 -23.02606 -21.02955 -20.83002 -18.65723 -17.35541 -16.91609 -16.59574 -16.36355 -15.84361 -15.48417 -15.21715 -14.36248 -14.30420 -13.87634 -13.70256 -13.14635 -13.09206 -12.88170 -12.77979 -12.70146 -12.48399 -12.32690 -12.06153 -11.83545 -11.72219 -11.49613 -11.22354 -10.99920 -10.77435 -10.52593 -10.47199 -8.95743 -8.15804 -6.23154 1.40424 1.41425 1.54698 2.41779 3.03356 3.15417 3.20591 3.71311 3.83371 4.02158 4.11399 4.19194 4.26946 4.36865 4.46728 4.56521 4.73038 4.78377 4.83938 4.86088 4.92186 5.00888 5.05048 5.11955 5.16508 5.18558 5.24663 5.38176 5.46486 5.50639 5.51946 5.77798 6.11868 6.43499 6.66833 6.91865 6.99316 7.44734 8.95000 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.035468 B = 0.007056 C = 0.006434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.244207 B = 3967.037358 C = 4350.780930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.125 4.125 3 C -0.135 4.135 4 C 0.130 3.870 5 H 0.091 0.909 6 O -0.559 6.559 7 C 0.027 3.973 8 N -0.507 5.507 9 C 0.210 3.790 10 C -0.501 4.501 11 H 0.067 0.933 12 C -0.001 4.001 13 N -0.939 5.939 14 Si 0.962 3.038 15 H -0.263 1.263 16 H -0.280 1.280 17 H -0.281 1.281 18 C 0.002 3.998 19 C -0.144 4.144 20 C -0.171 4.171 21 H 0.047 0.953 22 H 0.062 0.938 23 H 0.070 0.930 24 H 0.077 0.923 25 H 0.065 0.935 26 H 0.052 0.948 27 H 0.056 0.944 28 H 0.375 0.625 29 H 0.025 0.975 30 H 0.068 0.932 31 H -0.037 1.037 32 H -0.002 1.002 33 H 0.262 0.738 34 H 0.069 0.931 35 H 0.089 0.911 36 H 0.112 0.888 37 H 0.094 0.906 38 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.296 13.429 6.231 15.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.144 4.144 3 C -0.193 4.193 4 C 0.070 3.930 5 H 0.109 0.891 6 O -0.366 6.366 7 C -0.102 4.102 8 N -0.231 5.231 9 C 0.084 3.916 10 C -0.539 4.539 11 H 0.085 0.915 12 C -0.198 4.198 13 N -0.581 5.581 14 Si 0.788 3.212 15 H -0.187 1.187 16 H -0.206 1.206 17 H -0.207 1.207 18 C -0.107 4.107 19 C -0.181 4.181 20 C -0.208 4.208 21 H 0.067 0.933 22 H 0.081 0.919 23 H 0.089 0.911 24 H 0.095 0.905 25 H 0.084 0.916 26 H 0.071 0.929 27 H 0.075 0.925 28 H 0.223 0.777 29 H 0.043 0.957 30 H 0.086 0.914 31 H -0.019 1.019 32 H 0.016 0.984 33 H 0.070 0.930 34 H 0.087 0.913 35 H 0.108 0.892 36 H 0.130 0.870 37 H 0.113 0.887 38 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 3.761 13.604 5.710 15.226 hybrid contribution -0.677 -1.626 0.253 1.779 sum 3.085 11.978 5.963 13.731 Atomic orbital electron populations 1.21891 0.94510 1.01729 1.02846 1.21768 0.97057 0.97724 0.97843 1.21688 1.00793 0.94641 1.02128 1.21822 0.98668 0.87718 0.84795 0.89076 1.86526 1.27009 1.78440 1.44578 1.22926 0.99452 0.96139 0.91656 1.61805 1.01649 1.19674 1.39956 1.19378 0.92097 0.84464 0.95676 1.21527 1.36613 0.98820 0.96954 0.91528 1.25855 0.95329 0.97106 1.01509 1.70100 1.42088 1.09580 1.36335 0.85429 0.77858 0.78229 0.79719 1.18735 1.20597 1.20650 1.22191 0.87448 1.06027 0.95054 1.23032 1.00013 0.92254 1.02838 1.23064 1.01064 0.97675 0.99024 0.93350 0.91882 0.91115 0.90498 0.91589 0.92927 0.92496 0.77694 0.95677 0.91391 1.01943 0.98429 0.92969 0.91331 0.89250 0.86974 0.88735 0.89385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.05 8.54 71.98 0.61 -2.44 16 2 C -0.12 -2.72 2.81 -10.79 -0.03 -2.75 16 3 C -0.14 -2.57 9.05 71.98 0.65 -1.92 16 4 C 0.13 3.69 2.64 30.60 0.08 3.78 16 5 H 0.09 2.72 6.29 -2.39 -0.02 2.70 16 6 O -0.56 -16.95 12.57 -148.98 -1.87 -18.83 16 7 C 0.03 0.95 4.07 86.30 0.35 1.30 16 8 N -0.51 -22.22 4.52 -875.53 -3.95 -26.17 16 9 C 0.21 11.35 4.77 85.56 0.41 11.76 16 10 C -0.50 -28.50 7.82 25.60 0.20 -28.30 16 11 H 0.07 3.76 5.78 -2.91 -0.02 3.75 16 12 C 0.00 -0.06 5.46 84.65 0.46 0.40 16 13 N -0.94 -57.28 13.29 21.45 0.28 -56.99 16 14 Si 0.96 45.01 29.54 68.60 2.03 47.04 16 15 H -0.26 -11.85 7.11 99.48 0.71 -11.15 16 16 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 17 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 18 C 0.00 0.07 4.18 44.92 0.19 0.26 16 19 C -0.14 -4.74 9.16 30.62 0.28 -4.46 16 20 C -0.17 -6.68 9.48 30.62 0.29 -6.39 16 21 H 0.05 1.09 6.54 -2.39 -0.02 1.07 16 22 H 0.06 1.18 6.78 -2.39 -0.02 1.16 16 23 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 24 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 25 H 0.07 1.03 8.14 -2.38 -0.02 1.02 16 26 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 27 H 0.06 1.14 7.68 -2.39 -0.02 1.12 16 28 H 0.37 9.64 7.33 -74.06 -0.54 9.10 16 29 H 0.03 0.89 8.12 -2.39 -0.02 0.87 16 30 H 0.07 2.44 6.39 -2.39 -0.02 2.42 16 31 H -0.04 -2.22 7.99 -2.39 -0.02 -2.24 16 32 H 0.00 -0.13 7.73 -2.39 -0.02 -0.15 16 33 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 34 H 0.07 2.65 8.14 -2.38 -0.02 2.63 16 35 H 0.09 3.15 8.14 -2.39 -0.02 3.13 16 36 H 0.11 2.93 8.14 -2.39 -0.02 2.91 16 37 H 0.09 3.31 8.14 -2.39 -0.02 3.29 16 38 H 0.09 3.97 5.45 -2.39 -0.01 3.96 16 Total: -1.00 -64.78 298.73 0.47 -64.32 By element: Atomic # 1 Polarization: 18.89 SS G_CDS: 0.48 Total: 19.38 kcal Atomic # 6 Polarization: -32.24 SS G_CDS: 3.50 Total: -28.74 kcal Atomic # 7 Polarization: -79.49 SS G_CDS: -3.67 Total: -83.16 kcal Atomic # 8 Polarization: -16.95 SS G_CDS: -1.87 Total: -18.83 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Total: -64.78 0.47 -64.32 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300918449.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.673 kcal (2) G-P(sol) polarization free energy of solvation -64.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds