Wall clock time and date at job start Mon Mar 30 2020 03:05:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.46964 * 2 1 4 4 C 1.52998 * 109.47042 * 240.00176 * 2 1 3 5 5 C 1.50697 * 109.47616 * 60.00066 * 4 2 1 6 6 H 1.08008 * 119.99336 * 359.97438 * 5 4 2 7 7 C 1.37877 * 120.00417 * 180.02562 * 5 4 2 8 8 N 1.31517 * 119.99689 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00069 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.47139 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.47083 * 119.99535 * 9 7 5 12 12 H 1.48499 * 109.47007 * 239.99835 * 9 7 5 13 13 C 1.52999 * 109.47088 * 119.99872 * 2 1 3 14 14 N 1.46901 * 109.47418 * 299.99927 * 13 2 1 15 15 C 1.46894 * 110.99987 * 179.97438 * 14 13 2 16 16 H 1.09004 * 115.55467 * 9.33596 * 15 14 13 17 17 C 1.52999 * 117.51960 * 223.62859 * 15 14 13 18 18 C 1.53001 * 60.00190 * 252.52205 * 17 15 14 19 19 H 1.09002 * 117.49822 * 252.51020 * 18 17 15 20 20 C 1.53003 * 117.51964 * 107.47982 * 18 17 15 21 21 O 1.42895 * 109.47298 * 116.28202 * 20 18 17 22 22 H 1.08998 * 109.47085 * 299.99877 * 1 2 3 23 23 H 1.09003 * 109.46976 * 60.00260 * 1 2 3 24 24 H 1.08999 * 109.46684 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47279 * 180.02562 * 3 2 1 26 26 H 1.09003 * 109.47062 * 299.99687 * 3 2 1 27 27 H 1.08998 * 109.47119 * 60.00143 * 3 2 1 28 28 H 1.09005 * 109.46715 * 179.97438 * 4 2 1 29 29 H 1.08999 * 109.47399 * 299.99584 * 4 2 1 30 30 H 0.97001 * 119.99539 * 180.02562 * 8 7 5 31 31 H 1.08998 * 109.46860 * 180.02562 * 13 2 1 32 32 H 1.08999 * 109.47092 * 60.00575 * 13 2 1 33 33 H 1.00906 * 110.99576 * 56.04642 * 14 13 2 34 34 H 1.09001 * 117.50150 * 145.03464 * 17 15 14 35 35 H 1.08995 * 117.49529 * 0.02562 * 17 15 14 36 36 H 1.08999 * 109.47309 * 236.28814 * 20 18 17 37 37 H 1.09005 * 109.46839 * 356.28534 * 20 18 17 38 38 H 0.96693 * 114.00473 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5377 -0.0108 -2.4797 6 1 0.9165 0.8671 -2.3806 7 6 1.8704 -0.4822 -3.7320 8 7 2.6265 -1.5515 -3.8526 9 14 1.2472 0.3980 -5.2572 10 1 0.4217 1.5645 -4.8530 11 1 2.4018 0.8646 -6.0660 12 1 0.4219 -0.5356 -6.0650 13 6 2.0400 -0.7212 1.2492 14 7 1.5504 -0.0287 2.4487 15 6 2.0209 -0.6952 3.6703 16 1 2.7676 -1.4755 3.5224 17 6 1.0113 -0.8892 4.8034 18 6 2.1253 0.1506 4.9410 19 1 2.9405 -0.0733 5.6291 20 6 1.7315 1.6258 4.8421 21 8 2.0006 2.2751 6.0862 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 3.1300 1.4426 -0.0005 26 1 1.6767 1.9563 -0.8900 27 1 1.6767 1.9563 0.8900 28 1 3.1301 -0.7208 -1.2494 29 1 1.6768 -1.7489 -1.2493 30 1 2.8608 -1.8829 -4.7337 31 1 3.1300 -0.7208 1.2494 32 1 1.6768 -1.7489 1.2492 33 1 0.5438 0.0413 2.4402 34 1 1.0937 -1.7971 5.4010 35 1 -0.0024 -0.5227 4.6424 36 1 2.3086 2.1036 4.0505 37 1 0.6684 1.7035 4.6142 38 1 1.7744 3.2151 6.0963 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308685759.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:09 Heat of formation + Delta-G solvation = -45.554774 kcal Electronic energy + Delta-G solvation = -16069.694857 eV Core-core repulsion = 13526.150248 eV Total energy + Delta-G solvation = -2543.544610 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.74057 -37.09377 -35.86086 -32.82635 -31.34850 -27.02424 -26.66887 -26.35599 -25.14257 -22.53357 -21.76242 -19.94036 -18.00722 -17.35046 -16.25865 -15.79091 -15.21603 -14.63883 -14.49286 -14.02018 -13.49977 -13.28714 -12.89416 -12.69028 -12.25759 -12.00872 -11.79632 -11.24630 -11.00461 -10.96374 -10.77406 -10.74090 -10.64072 -10.49413 -10.25268 -10.12816 -9.70523 -9.63769 -9.03699 -8.82589 -8.32948 -8.00167 -5.97301 -3.97462 3.31724 3.39691 3.42906 3.72399 4.14400 4.26109 4.49043 4.83296 5.04741 5.31758 5.34372 5.38766 5.51309 5.66196 5.71180 5.74602 5.79753 5.83510 5.95848 6.18528 6.23718 6.30681 6.47844 6.62038 6.76461 6.80421 7.18431 7.19545 7.23422 7.35654 7.58630 7.59403 7.69427 7.83950 8.02949 8.47109 9.08104 9.65535 11.14426 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.051483 B = 0.005023 C = 0.004836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 543.739553 B = 5573.410436 C = 5788.274670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.059 4.059 3 C -0.116 4.116 4 C 0.033 3.967 5 C -0.507 4.507 6 H 0.059 0.941 7 C 0.054 3.946 8 N -0.897 5.897 9 Si 0.887 3.113 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.286 1.286 13 C 0.071 3.929 14 N -0.655 5.655 15 C 0.039 3.961 16 H 0.111 0.889 17 C -0.205 4.205 18 C -0.145 4.145 19 H 0.108 0.892 20 C 0.115 3.885 21 O -0.581 6.581 22 H 0.032 0.968 23 H 0.065 0.935 24 H 0.041 0.959 25 H 0.040 0.960 26 H 0.055 0.945 27 H 0.040 0.960 28 H 0.015 0.985 29 H 0.013 0.987 30 H 0.258 0.742 31 H 0.068 0.932 32 H 0.027 0.973 33 H 0.340 0.660 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.061 0.939 37 H 0.043 0.957 38 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.001 3.942 14.913 15.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.060 4.060 3 C -0.173 4.173 4 C -0.004 4.004 5 C -0.545 4.545 6 H 0.078 0.922 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.716 3.284 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.212 1.212 13 C -0.058 4.058 14 N -0.286 5.286 15 C -0.073 4.073 16 H 0.128 0.872 17 C -0.243 4.243 18 C -0.165 4.165 19 H 0.126 0.874 20 C 0.038 3.962 21 O -0.386 6.386 22 H 0.051 0.949 23 H 0.084 0.916 24 H 0.060 0.940 25 H 0.059 0.941 26 H 0.074 0.926 27 H 0.059 0.941 28 H 0.034 0.966 29 H 0.031 0.969 30 H 0.068 0.932 31 H 0.087 0.913 32 H 0.045 0.955 33 H 0.161 0.839 34 H 0.111 0.889 35 H 0.112 0.888 36 H 0.079 0.921 37 H 0.061 0.939 38 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -2.222 3.691 14.900 15.511 hybrid contribution -1.020 0.043 -1.094 1.497 sum -3.243 3.734 13.806 14.665 Atomic orbital electron populations 1.21777 0.96080 1.00440 1.00376 1.20647 0.94728 0.96157 0.94424 1.21602 0.99857 0.95778 1.00101 1.19129 0.96168 0.95000 0.90129 1.21272 1.30739 1.11893 0.90599 0.92241 1.25016 0.95404 0.95107 0.99070 1.69979 1.37326 1.23228 1.23195 0.86608 0.78619 0.79718 0.83494 1.19778 1.21140 1.21191 1.22181 0.99893 0.94866 0.88833 1.60319 1.16098 1.51885 1.00276 1.22555 1.00585 0.97996 0.86115 0.87171 1.23600 0.95427 1.01149 1.04170 1.22390 1.00983 0.91729 1.01414 0.87438 1.21528 0.98637 0.91112 0.84960 1.86428 1.88847 1.27039 1.36324 0.94944 0.91638 0.94007 0.94090 0.92636 0.94054 0.96620 0.96865 0.93210 0.91314 0.95460 0.83881 0.88880 0.88796 0.92121 0.93872 0.77653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.35 7.89 37.16 0.29 -2.06 16 2 C -0.06 -1.15 0.60 -154.51 -0.09 -1.25 16 3 C -0.12 -2.20 8.06 37.16 0.30 -1.90 16 4 C 0.03 0.83 4.04 -27.89 -0.11 0.72 16 5 C -0.51 -13.74 7.65 -34.44 -0.26 -14.01 16 6 H 0.06 1.57 5.68 -52.48 -0.30 1.27 16 7 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 8 N -0.90 -26.73 13.29 55.43 0.74 -26.00 16 9 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 10 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 13 C 0.07 1.19 4.50 -3.82 -0.02 1.17 16 14 N -0.66 -9.21 5.36 -106.73 -0.57 -9.79 16 15 C 0.04 0.49 6.29 -67.71 -0.43 0.06 16 16 H 0.11 1.36 7.90 -51.93 -0.41 0.95 16 17 C -0.20 -2.25 9.88 -26.73 -0.26 -2.51 16 18 C -0.15 -1.74 6.06 -90.61 -0.55 -2.29 16 19 H 0.11 1.30 8.14 -51.93 -0.42 0.87 16 20 C 0.12 1.34 6.79 37.16 0.25 1.59 16 21 O -0.58 -6.60 13.66 -35.23 -0.48 -7.09 16 22 H 0.03 0.49 6.57 -51.93 -0.34 0.15 16 23 H 0.06 1.30 6.62 -51.93 -0.34 0.95 16 24 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.05 1.13 6.62 -51.93 -0.34 0.79 16 27 H 0.04 0.70 7.60 -51.93 -0.39 0.30 16 28 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 31 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.34 4.60 6.56 -39.29 -0.26 4.34 16 34 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.09 1.00 7.98 -51.93 -0.41 0.58 16 36 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.04 0.48 7.88 -51.93 -0.41 0.07 16 38 H 0.38 2.54 9.12 45.56 0.42 2.96 16 LS Contribution 304.48 15.07 4.59 4.59 Total: -1.00 -29.95 304.48 -7.46 -37.41 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: -5.74 Total: 3.45 kcal Atomic # 6 Polarization: -18.06 SS G_CDS: -0.98 Total: -19.03 kcal Atomic # 7 Polarization: -35.95 SS G_CDS: 0.16 Total: -35.78 kcal Atomic # 8 Polarization: -6.60 SS G_CDS: -0.48 Total: -7.09 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -29.95 -7.46 -37.41 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308685759.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.141 kcal (2) G-P(sol) polarization free energy of solvation -29.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds