Wall clock time and date at job start Mon Mar 30 2020 03:05:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.46964 * 2 1 4 4 C 1.52998 * 109.47042 * 240.00176 * 2 1 3 5 5 C 1.50697 * 109.47616 * 60.00066 * 4 2 1 6 6 H 1.08008 * 119.99336 * 359.97438 * 5 4 2 7 7 C 1.37877 * 120.00417 * 180.02562 * 5 4 2 8 8 N 1.31517 * 119.99689 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00069 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.47139 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.47083 * 119.99535 * 9 7 5 12 12 H 1.48499 * 109.47007 * 239.99835 * 9 7 5 13 13 C 1.52999 * 109.47088 * 119.99872 * 2 1 3 14 14 N 1.46901 * 109.47418 * 299.99927 * 13 2 1 15 15 C 1.46894 * 110.99987 * 179.97438 * 14 13 2 16 16 H 1.09004 * 115.55467 * 9.33596 * 15 14 13 17 17 C 1.52999 * 117.51960 * 223.62859 * 15 14 13 18 18 C 1.53001 * 60.00190 * 252.52205 * 17 15 14 19 19 H 1.09002 * 117.49822 * 252.51020 * 18 17 15 20 20 C 1.53003 * 117.51964 * 107.47982 * 18 17 15 21 21 O 1.42895 * 109.47298 * 116.28202 * 20 18 17 22 22 H 1.08998 * 109.47085 * 299.99877 * 1 2 3 23 23 H 1.09003 * 109.46976 * 60.00260 * 1 2 3 24 24 H 1.08999 * 109.46684 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47279 * 180.02562 * 3 2 1 26 26 H 1.09003 * 109.47062 * 299.99687 * 3 2 1 27 27 H 1.08998 * 109.47119 * 60.00143 * 3 2 1 28 28 H 1.09005 * 109.46715 * 179.97438 * 4 2 1 29 29 H 1.08999 * 109.47399 * 299.99584 * 4 2 1 30 30 H 0.97001 * 119.99539 * 180.02562 * 8 7 5 31 31 H 1.08998 * 109.46860 * 180.02562 * 13 2 1 32 32 H 1.08999 * 109.47092 * 60.00575 * 13 2 1 33 33 H 1.00906 * 110.99576 * 56.04642 * 14 13 2 34 34 H 1.09001 * 117.50150 * 145.03464 * 17 15 14 35 35 H 1.08995 * 117.49529 * 0.02562 * 17 15 14 36 36 H 1.08999 * 109.47309 * 236.28814 * 20 18 17 37 37 H 1.09005 * 109.46839 * 356.28534 * 20 18 17 38 38 H 0.96693 * 114.00473 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5377 -0.0108 -2.4797 6 1 0.9165 0.8671 -2.3806 7 6 1.8704 -0.4822 -3.7320 8 7 2.6265 -1.5515 -3.8526 9 14 1.2472 0.3980 -5.2572 10 1 0.4217 1.5645 -4.8530 11 1 2.4018 0.8646 -6.0660 12 1 0.4219 -0.5356 -6.0650 13 6 2.0400 -0.7212 1.2492 14 7 1.5504 -0.0287 2.4487 15 6 2.0209 -0.6952 3.6703 16 1 2.7676 -1.4755 3.5224 17 6 1.0113 -0.8892 4.8034 18 6 2.1253 0.1506 4.9410 19 1 2.9405 -0.0733 5.6291 20 6 1.7315 1.6258 4.8421 21 8 2.0006 2.2751 6.0862 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 3.1300 1.4426 -0.0005 26 1 1.6767 1.9563 -0.8900 27 1 1.6767 1.9563 0.8900 28 1 3.1301 -0.7208 -1.2494 29 1 1.6768 -1.7489 -1.2493 30 1 2.8608 -1.8829 -4.7337 31 1 3.1300 -0.7208 1.2494 32 1 1.6768 -1.7489 1.2492 33 1 0.5438 0.0413 2.4402 34 1 1.0937 -1.7971 5.4010 35 1 -0.0024 -0.5227 4.6424 36 1 2.3086 2.1036 4.0505 37 1 0.6684 1.7035 4.6142 38 1 1.7744 3.2151 6.0963 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308685759.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:09 Heat of formation + Delta-G solvation = -66.365268 kcal Electronic energy + Delta-G solvation = -16070.597268 eV Core-core repulsion = 13526.150248 eV Total energy + Delta-G solvation = -2544.447021 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.84632 -38.43464 -36.85937 -34.73438 -32.82322 -28.93589 -27.89446 -27.61868 -26.65955 -24.38280 -22.72262 -20.91617 -19.55952 -18.34805 -18.25766 -16.87233 -16.48494 -16.37103 -15.56091 -15.44276 -14.88059 -14.60218 -14.39134 -13.94156 -13.88755 -13.55187 -13.10234 -12.83015 -12.67397 -12.58314 -12.25628 -12.17050 -12.01314 -11.92531 -11.65999 -11.55905 -11.33679 -10.87004 -10.78063 -10.50648 -10.44360 -9.12747 -8.13730 -6.20575 1.40571 1.41813 1.53690 2.44075 2.79189 3.15727 3.20599 3.35251 3.92485 4.07876 4.19905 4.24129 4.37450 4.44360 4.47184 4.59790 4.77616 4.79163 4.87377 4.92366 4.95370 4.96477 5.08498 5.22220 5.23254 5.31181 5.52789 5.54813 5.59465 5.65612 5.87913 5.93512 6.09407 6.37233 6.48188 6.95006 6.95553 7.46962 8.98887 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.051483 B = 0.005023 C = 0.004836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 543.739553 B = 5573.410436 C = 5788.274670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.056 4.056 3 C -0.107 4.107 4 C 0.039 3.961 5 C -0.513 4.513 6 H 0.067 0.933 7 C -0.004 4.004 8 N -0.938 5.938 9 Si 0.956 3.044 10 H -0.260 1.260 11 H -0.283 1.283 12 H -0.282 1.282 13 C 0.084 3.916 14 N -0.649 5.649 15 C 0.024 3.976 16 H 0.108 0.892 17 C -0.187 4.187 18 C -0.150 4.150 19 H 0.105 0.895 20 C 0.118 3.882 21 O -0.596 6.596 22 H 0.068 0.932 23 H 0.047 0.953 24 H 0.037 0.963 25 H 0.029 0.971 26 H 0.038 0.962 27 H 0.068 0.932 28 H -0.016 1.016 29 H -0.015 1.015 30 H 0.259 0.741 31 H 0.057 0.943 32 H 0.022 0.978 33 H 0.346 0.654 34 H 0.105 0.895 35 H 0.103 0.897 36 H 0.051 0.949 37 H 0.052 0.948 38 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.367 5.137 16.050 17.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.056 4.056 3 C -0.164 4.164 4 C 0.001 3.999 5 C -0.551 4.551 6 H 0.085 0.915 7 C -0.201 4.201 8 N -0.580 5.580 9 Si 0.781 3.219 10 H -0.184 1.184 11 H -0.209 1.209 12 H -0.208 1.208 13 C -0.045 4.045 14 N -0.280 5.280 15 C -0.087 4.087 16 H 0.126 0.874 17 C -0.226 4.226 18 C -0.169 4.169 19 H 0.123 0.877 20 C 0.040 3.960 21 O -0.404 6.404 22 H 0.086 0.914 23 H 0.066 0.934 24 H 0.056 0.944 25 H 0.048 0.952 26 H 0.058 0.942 27 H 0.087 0.913 28 H 0.002 0.998 29 H 0.003 0.997 30 H 0.068 0.932 31 H 0.076 0.924 32 H 0.041 0.959 33 H 0.168 0.832 34 H 0.124 0.876 35 H 0.121 0.879 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -3.603 4.913 16.060 17.177 hybrid contribution -0.566 -0.332 -1.373 1.522 sum -4.169 4.582 14.688 15.940 Atomic orbital electron populations 1.21691 0.94560 1.00512 1.01231 1.20505 0.95895 0.96100 0.93114 1.21506 0.99122 0.95249 1.00550 1.19017 0.94093 0.94056 0.92716 1.21658 1.30137 1.11876 0.91429 0.91528 1.25914 0.95726 0.95889 1.02575 1.70118 1.38937 1.24992 1.23952 0.85531 0.78113 0.78831 0.79398 1.18388 1.20928 1.20849 1.21856 0.99141 0.94456 0.89028 1.60213 1.16451 1.51629 0.99711 1.22545 1.01782 0.98624 0.85738 0.87388 1.23659 0.95314 1.01175 1.02434 1.22438 1.01571 0.92379 1.00549 0.87736 1.21464 0.98929 0.90748 0.84832 1.86382 1.89054 1.28840 1.36132 0.91361 0.93415 0.94354 0.95170 0.94249 0.91330 0.99771 0.99684 0.93196 0.92433 0.95938 0.83229 0.87617 0.87897 0.93064 0.92965 0.75443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.26 7.89 71.98 0.57 -3.70 16 2 C -0.06 -2.16 0.60 -52.18 -0.03 -2.19 16 3 C -0.11 -3.96 8.06 71.98 0.58 -3.38 16 4 C 0.04 1.99 4.04 29.85 0.12 2.11 16 5 C -0.51 -28.16 7.65 25.60 0.20 -27.96 16 6 H 0.07 3.50 5.68 -2.91 -0.02 3.49 16 7 C 0.00 -0.25 5.46 84.65 0.46 0.21 16 8 N -0.94 -57.28 13.29 21.45 0.28 -57.00 16 9 Si 0.96 44.23 29.54 68.60 2.03 46.26 16 10 H -0.26 -11.37 7.11 99.48 0.71 -10.67 16 11 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 12 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 13 C 0.08 2.80 4.50 86.30 0.39 3.18 16 14 N -0.65 -16.93 5.36 -491.57 -2.64 -19.57 16 15 C 0.02 0.56 6.29 44.92 0.28 0.84 16 16 H 0.11 2.55 7.90 -2.38 -0.02 2.53 16 17 C -0.19 -3.57 9.88 30.59 0.30 -3.27 16 18 C -0.15 -3.26 6.06 -10.79 -0.07 -3.33 16 19 H 0.10 2.34 8.14 -2.39 -0.02 2.32 16 20 C 0.12 2.46 6.79 71.98 0.49 2.95 16 21 O -0.60 -12.18 13.66 -148.98 -2.03 -14.22 16 22 H 0.07 1.87 6.57 -2.39 -0.02 1.86 16 23 H 0.05 1.82 6.62 -2.39 -0.02 1.80 16 24 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 25 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 26 H 0.04 1.56 6.62 -2.39 -0.02 1.54 16 27 H 0.07 2.15 7.60 -2.39 -0.02 2.13 16 28 H -0.02 -0.92 8.14 -2.38 -0.02 -0.94 16 29 H -0.02 -0.86 8.14 -2.39 -0.02 -0.88 16 30 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 31 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 32 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.35 8.29 6.56 -89.69 -0.59 7.70 16 34 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 35 H 0.10 1.81 7.98 -2.39 -0.02 1.79 16 36 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.05 0.99 7.88 -2.38 -0.02 0.97 16 38 H 0.40 4.41 9.12 -74.06 -0.68 3.73 16 Total: -1.00 -64.49 304.48 0.70 -63.79 By element: Atomic # 1 Polarization: 15.50 SS G_CDS: -0.23 Total: 15.28 kcal Atomic # 6 Polarization: -37.82 SS G_CDS: 3.29 Total: -34.53 kcal Atomic # 7 Polarization: -74.22 SS G_CDS: -2.35 Total: -76.57 kcal Atomic # 8 Polarization: -12.18 SS G_CDS: -2.03 Total: -14.22 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.26 kcal Total: -64.49 0.70 -63.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308685759.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.580 kcal (2) G-P(sol) polarization free energy of solvation -64.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds