Wall clock time and date at job start Mon Mar 30 2020 02:48:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53002 * 110.56462 * 2 1 4 4 C 1.54486 * 110.50901 * 237.32259 * 2 1 3 5 5 O 1.44422 * 104.80309 * 265.33440 * 4 2 1 6 6 C 1.44428 * 105.27331 * 319.48893 * 5 4 2 7 7 C 1.54473 * 104.80508 * 40.51154 * 6 5 4 8 8 H 1.09002 * 110.63206 * 217.31706 * 7 6 5 9 9 N 1.46906 * 110.51019 * 94.66566 * 7 6 5 10 10 C 1.46901 * 110.99793 * 90.35692 * 9 7 6 11 11 C 1.53000 * 109.46769 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47060 * 180.02562 * 11 10 9 13 13 C 1.50697 * 109.47466 * 180.02562 * 12 11 10 14 14 H 1.08001 * 119.99890 * 0.02562 * 13 12 11 15 15 C 1.37876 * 120.00428 * 179.97438 * 13 12 11 16 16 N 1.31517 * 120.00362 * 180.02562 * 15 13 12 17 17 Si 1.86804 * 119.99850 * 359.97438 * 15 13 12 18 18 H 1.48504 * 109.47052 * 89.99717 * 17 15 13 19 19 H 1.48495 * 109.47307 * 209.99656 * 17 15 13 20 20 H 1.48500 * 109.47143 * 330.00164 * 17 15 13 21 21 H 1.09000 * 109.46757 * 297.31983 * 1 2 3 22 22 H 1.08998 * 109.46903 * 57.31796 * 1 2 3 23 23 H 1.08996 * 109.46689 * 177.31786 * 1 2 3 24 24 H 1.09000 * 109.47019 * 182.67921 * 3 2 1 25 25 H 1.09000 * 109.47248 * 302.67770 * 3 2 1 26 26 H 1.08996 * 109.46855 * 62.68165 * 3 2 1 27 27 H 1.09003 * 110.37333 * 24.16820 * 4 2 1 28 28 H 1.09003 * 110.37068 * 146.49777 * 4 2 1 29 29 H 1.09001 * 110.36972 * 281.68324 * 6 5 4 30 30 H 1.08993 * 110.37297 * 159.34756 * 6 5 4 31 31 H 1.00898 * 110.99995 * 326.40615 * 9 7 6 32 32 H 1.09001 * 109.46874 * 60.00179 * 10 9 7 33 33 H 1.08992 * 109.47407 * 300.00197 * 10 9 7 34 34 H 1.09002 * 109.47398 * 300.00295 * 11 10 9 35 35 H 1.09001 * 109.47194 * 60.00475 * 11 10 9 36 36 H 1.09002 * 109.47153 * 300.00319 * 12 11 10 37 37 H 1.08998 * 109.47533 * 59.99948 * 12 11 10 38 38 H 0.96994 * 119.99814 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0675 1.4325 0.0000 4 6 2.0713 -0.7812 -1.2179 5 8 2.3070 -2.1177 -0.7240 6 6 2.8758 -1.9422 0.5919 7 6 2.0715 -0.7814 1.2180 8 1 2.7201 -0.1464 1.8215 9 7 0.9632 -1.3020 2.0296 10 6 1.3819 -1.5071 3.4226 11 6 0.2035 -2.0480 4.2349 12 6 0.6394 -2.2610 5.6859 13 6 -0.5210 -2.7943 6.4859 14 1 -1.4740 -2.9647 6.0072 15 6 -0.3659 -3.0657 7.8288 16 7 -1.3784 -3.5317 8.5268 17 14 1.2831 -2.7730 8.6564 18 1 1.3323 -1.3861 9.1851 19 1 1.4535 -3.7353 9.7745 20 1 2.3742 -2.9647 7.6675 21 1 -0.3633 0.4717 0.9131 22 1 -0.3633 0.5549 -0.8650 23 1 -0.3632 -1.0265 -0.0481 24 1 3.1563 1.4121 -0.0480 25 1 1.6757 1.9676 -0.8650 26 1 1.7536 1.9383 0.9130 27 1 1.3311 -0.7973 -2.0179 28 1 3.0023 -0.3371 -1.5703 29 1 3.9302 -1.6762 0.5171 30 1 2.7536 -2.8502 1.1823 31 1 0.5942 -2.1536 1.6338 32 1 1.7101 -0.5581 3.8468 33 1 2.2037 -2.2224 3.4535 34 1 -0.6181 -1.3323 4.2040 35 1 -0.1250 -2.9969 3.8109 36 1 1.4612 -2.9765 5.7172 37 1 0.9677 -1.3120 6.1098 38 1 -1.2693 -3.7222 9.4716 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313019427.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:54 Heat of formation + Delta-G solvation = -63.384153 kcal Electronic energy + Delta-G solvation = -16104.487180 eV Core-core repulsion = 13560.169431 eV Total energy + Delta-G solvation = -2544.317750 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.21465 -36.05483 -34.50958 -33.17706 -31.37586 -28.58575 -27.45102 -26.17816 -25.72836 -22.72064 -21.75637 -20.24158 -19.16860 -16.76908 -16.30008 -16.17604 -15.39115 -14.82486 -14.64585 -14.08660 -14.05877 -13.38105 -13.29935 -12.96476 -12.66276 -12.28271 -11.99629 -11.83031 -11.64777 -11.36216 -11.06590 -10.98539 -10.81247 -10.77478 -10.73063 -9.96292 -9.91122 -9.70648 -9.55385 -9.15937 -8.52237 -8.20329 -6.02484 -4.00219 3.31189 3.38424 3.41832 3.82619 4.17456 4.42196 4.46385 4.68108 4.84389 4.91281 5.12544 5.21484 5.31404 5.38991 5.45897 5.50163 5.55201 5.64445 5.68764 5.73315 5.87111 5.89064 6.04269 6.16100 6.18225 6.46102 6.50951 6.56852 6.66761 6.92420 7.22132 7.35408 7.44289 7.55071 7.81964 8.56809 9.03220 9.60142 11.11171 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.046784 B = 0.004820 C = 0.004751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.356432 B = 5807.284040 C = 5891.956298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.091 4.091 3 C -0.136 4.136 4 C 0.050 3.950 5 O -0.373 6.373 6 C 0.015 3.985 7 C 0.061 3.939 8 H 0.090 0.910 9 N -0.674 5.674 10 C 0.054 3.946 11 C -0.099 4.099 12 C -0.013 4.013 13 C -0.519 4.519 14 H 0.072 0.928 15 C 0.065 3.935 16 N -0.905 5.905 17 Si 0.881 3.119 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.267 1.267 21 H 0.070 0.930 22 H 0.041 0.959 23 H 0.057 0.943 24 H 0.052 0.948 25 H 0.057 0.943 26 H 0.062 0.938 27 H 0.090 0.910 28 H 0.056 0.944 29 H 0.059 0.941 30 H 0.091 0.909 31 H 0.344 0.656 32 H 0.066 0.934 33 H 0.023 0.977 34 H 0.062 0.938 35 H 0.051 0.949 36 H 0.013 0.987 37 H 0.011 0.989 38 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.022 7.946 -18.203 21.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.092 4.092 3 C -0.193 4.193 4 C -0.027 4.027 5 O -0.292 6.292 6 C -0.064 4.064 7 C -0.050 4.050 8 H 0.108 0.892 9 N -0.304 5.304 10 C -0.074 4.074 11 C -0.137 4.137 12 C -0.051 4.051 13 C -0.557 4.557 14 H 0.090 0.910 15 C -0.136 4.136 16 N -0.544 5.544 17 Si 0.708 3.292 18 H -0.203 1.203 19 H -0.214 1.214 20 H -0.191 1.191 21 H 0.089 0.911 22 H 0.060 0.940 23 H 0.076 0.924 24 H 0.071 0.929 25 H 0.076 0.924 26 H 0.081 0.919 27 H 0.109 0.891 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.109 0.891 31 H 0.163 0.837 32 H 0.085 0.915 33 H 0.042 0.958 34 H 0.081 0.919 35 H 0.070 0.930 36 H 0.031 0.969 37 H 0.029 0.971 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 8.648 8.299 -17.995 21.622 hybrid contribution 1.500 -0.520 0.649 1.715 sum 10.148 7.779 -17.346 21.550 Atomic orbital electron populations 1.21514 0.92289 1.02099 1.01403 1.21982 0.98037 0.95378 0.93791 1.21809 1.00263 0.94896 1.02382 1.23620 0.99714 0.82870 0.96541 1.89127 1.83034 1.26064 1.30949 1.24197 0.97334 1.00000 0.84867 1.23020 0.92015 0.95436 0.94528 0.89189 1.60647 1.31276 1.36050 1.02436 1.22221 0.97940 0.99837 0.87405 1.21435 0.96285 0.99920 0.96063 1.19539 0.97305 0.96099 0.92117 1.21155 0.97765 1.42824 0.93934 0.91025 1.25042 0.96464 0.94664 0.97399 1.69919 1.30869 1.45450 1.08157 0.86766 0.85080 0.78159 0.79173 1.20311 1.21427 1.19136 0.91061 0.93977 0.92360 0.92859 0.92392 0.91861 0.89144 0.92569 0.92310 0.89109 0.83672 0.91503 0.95832 0.91936 0.93003 0.96895 0.97098 0.92779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.25 7.48 37.16 0.28 -0.97 16 2 C -0.09 -0.92 1.05 -152.93 -0.16 -1.08 16 3 C -0.14 -1.17 8.31 37.16 0.31 -0.86 16 4 C 0.05 0.49 6.73 37.94 0.26 0.75 16 5 O -0.37 -4.71 11.65 -35.23 -0.41 -5.12 16 6 C 0.01 0.17 7.08 37.93 0.27 0.44 16 7 C 0.06 0.71 3.07 -66.15 -0.20 0.51 16 8 H 0.09 1.02 7.41 -51.93 -0.38 0.64 16 9 N -0.67 -9.16 4.54 -105.07 -0.48 -9.64 16 10 C 0.05 0.86 5.55 -3.82 -0.02 0.84 16 11 C -0.10 -1.96 5.41 -26.73 -0.14 -2.10 16 12 C -0.01 -0.30 4.04 -27.89 -0.11 -0.42 16 13 C -0.52 -15.02 9.66 -34.44 -0.33 -15.35 16 14 H 0.07 2.23 7.99 -52.49 -0.42 1.81 16 15 C 0.07 1.92 5.47 -17.82 -0.10 1.83 16 16 N -0.90 -28.27 13.96 55.43 0.77 -27.50 16 17 Si 0.88 21.94 27.47 -169.99 -4.67 17.27 16 18 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 19 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 20 H -0.27 -6.37 6.54 56.52 0.37 -6.00 16 21 H 0.07 0.87 7.86 -51.93 -0.41 0.46 16 22 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 23 H 0.06 0.68 7.61 -51.93 -0.39 0.29 16 24 H 0.05 0.41 8.08 -51.93 -0.42 -0.01 16 25 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.09 0.82 7.87 -51.93 -0.41 0.41 16 28 H 0.06 0.49 7.83 -51.93 -0.41 0.08 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.09 1.07 8.02 -51.93 -0.42 0.66 16 31 H 0.34 4.73 8.06 -39.29 -0.32 4.42 16 32 H 0.07 1.06 8.08 -51.93 -0.42 0.64 16 33 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 35 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 36 H 0.01 0.31 7.20 -51.93 -0.37 -0.07 16 37 H 0.01 0.26 7.57 -51.93 -0.39 -0.14 16 38 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 LS Contribution 301.10 15.07 4.54 4.54 Total: -1.00 -30.64 301.10 -7.10 -37.73 By element: Atomic # 1 Polarization: 6.03 SS G_CDS: -6.89 Total: -0.86 kcal Atomic # 6 Polarization: -16.46 SS G_CDS: 0.04 Total: -16.42 kcal Atomic # 7 Polarization: -37.44 SS G_CDS: 0.30 Total: -37.14 kcal Atomic # 8 Polarization: -4.71 SS G_CDS: -0.41 Total: -5.12 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -4.67 Total: 17.27 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -30.64 -7.10 -37.73 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313019427.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.651 kcal (2) G-P(sol) polarization free energy of solvation -30.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds