Wall clock time and date at job start Mon Mar 30 2020 02:48:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53002 * 110.56462 * 2 1 4 4 C 1.54486 * 110.50901 * 237.32259 * 2 1 3 5 5 O 1.44422 * 104.80309 * 265.33440 * 4 2 1 6 6 C 1.44428 * 105.27331 * 319.48893 * 5 4 2 7 7 C 1.54473 * 104.80508 * 40.51154 * 6 5 4 8 8 H 1.09002 * 110.63206 * 217.31706 * 7 6 5 9 9 N 1.46906 * 110.51019 * 94.66566 * 7 6 5 10 10 C 1.46901 * 110.99793 * 90.35692 * 9 7 6 11 11 C 1.53000 * 109.46769 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47060 * 180.02562 * 11 10 9 13 13 C 1.50697 * 109.47466 * 180.02562 * 12 11 10 14 14 H 1.08001 * 119.99890 * 0.02562 * 13 12 11 15 15 C 1.37876 * 120.00428 * 179.97438 * 13 12 11 16 16 N 1.31517 * 120.00362 * 180.02562 * 15 13 12 17 17 Si 1.86804 * 119.99850 * 359.97438 * 15 13 12 18 18 H 1.48504 * 109.47052 * 89.99717 * 17 15 13 19 19 H 1.48495 * 109.47307 * 209.99656 * 17 15 13 20 20 H 1.48500 * 109.47143 * 330.00164 * 17 15 13 21 21 H 1.09000 * 109.46757 * 297.31983 * 1 2 3 22 22 H 1.08998 * 109.46903 * 57.31796 * 1 2 3 23 23 H 1.08996 * 109.46689 * 177.31786 * 1 2 3 24 24 H 1.09000 * 109.47019 * 182.67921 * 3 2 1 25 25 H 1.09000 * 109.47248 * 302.67770 * 3 2 1 26 26 H 1.08996 * 109.46855 * 62.68165 * 3 2 1 27 27 H 1.09003 * 110.37333 * 24.16820 * 4 2 1 28 28 H 1.09003 * 110.37068 * 146.49777 * 4 2 1 29 29 H 1.09001 * 110.36972 * 281.68324 * 6 5 4 30 30 H 1.08993 * 110.37297 * 159.34756 * 6 5 4 31 31 H 1.00898 * 110.99995 * 326.40615 * 9 7 6 32 32 H 1.09001 * 109.46874 * 60.00179 * 10 9 7 33 33 H 1.08992 * 109.47407 * 300.00197 * 10 9 7 34 34 H 1.09002 * 109.47398 * 300.00295 * 11 10 9 35 35 H 1.09001 * 109.47194 * 60.00475 * 11 10 9 36 36 H 1.09002 * 109.47153 * 300.00319 * 12 11 10 37 37 H 1.08998 * 109.47533 * 59.99948 * 12 11 10 38 38 H 0.96994 * 119.99814 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0675 1.4325 0.0000 4 6 2.0713 -0.7812 -1.2179 5 8 2.3070 -2.1177 -0.7240 6 6 2.8758 -1.9422 0.5919 7 6 2.0715 -0.7814 1.2180 8 1 2.7201 -0.1464 1.8215 9 7 0.9632 -1.3020 2.0296 10 6 1.3819 -1.5071 3.4226 11 6 0.2035 -2.0480 4.2349 12 6 0.6394 -2.2610 5.6859 13 6 -0.5210 -2.7943 6.4859 14 1 -1.4740 -2.9647 6.0072 15 6 -0.3659 -3.0657 7.8288 16 7 -1.3784 -3.5317 8.5268 17 14 1.2831 -2.7730 8.6564 18 1 1.3323 -1.3861 9.1851 19 1 1.4535 -3.7353 9.7745 20 1 2.3742 -2.9647 7.6675 21 1 -0.3633 0.4717 0.9131 22 1 -0.3633 0.5549 -0.8650 23 1 -0.3632 -1.0265 -0.0481 24 1 3.1563 1.4121 -0.0480 25 1 1.6757 1.9676 -0.8650 26 1 1.7536 1.9383 0.9130 27 1 1.3311 -0.7973 -2.0179 28 1 3.0023 -0.3371 -1.5703 29 1 3.9302 -1.6762 0.5171 30 1 2.7536 -2.8502 1.1823 31 1 0.5942 -2.1536 1.6338 32 1 1.7101 -0.5581 3.8468 33 1 2.2037 -2.2224 3.4535 34 1 -0.6181 -1.3323 4.2040 35 1 -0.1250 -2.9969 3.8109 36 1 1.4612 -2.9765 5.7172 37 1 0.9677 -1.3120 6.1098 38 1 -1.2693 -3.7222 9.4716 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313019427.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:54 Heat of formation + Delta-G solvation = -83.895358 kcal Electronic energy + Delta-G solvation = -16105.376613 eV Core-core repulsion = 13560.169431 eV Total energy + Delta-G solvation = -2545.207182 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.08451 -37.33656 -35.66065 -34.85227 -33.13429 -29.84345 -28.40024 -27.32781 -26.80071 -24.16279 -22.87298 -21.93611 -20.08317 -18.90404 -17.26947 -17.12547 -16.44595 -16.28596 -15.95129 -15.51108 -15.15052 -14.75569 -14.43961 -14.10922 -13.90432 -13.70151 -13.41886 -12.91407 -12.83861 -12.56211 -12.51798 -12.27365 -11.88456 -11.79976 -11.77065 -11.57474 -11.47948 -11.39033 -11.18294 -10.76494 -10.74668 -9.27160 -8.29390 -6.33923 1.35938 1.38130 1.50156 2.36524 3.01127 3.05939 3.13291 3.58606 3.83406 4.05079 4.09051 4.18806 4.32400 4.35941 4.44591 4.57491 4.66690 4.73763 4.75048 4.79704 4.90575 4.91666 4.97796 5.10729 5.11688 5.12936 5.27236 5.39950 5.51320 5.58168 5.61352 5.66437 5.77579 6.16494 6.29866 6.41314 6.74671 7.30792 8.87830 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.046784 B = 0.004820 C = 0.004751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.356432 B = 5807.284040 C = 5891.956298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.088 4.088 3 C -0.132 4.132 4 C 0.048 3.952 5 O -0.396 6.396 6 C 0.016 3.984 7 C 0.059 3.941 8 H 0.097 0.903 9 N -0.677 5.677 10 C 0.069 3.931 11 C -0.090 4.090 12 C -0.010 4.010 13 C -0.535 4.535 14 H 0.028 0.972 15 C 0.001 3.999 16 N -0.954 5.954 17 Si 0.955 3.045 18 H -0.265 1.265 19 H -0.284 1.284 20 H -0.245 1.245 21 H 0.054 0.946 22 H 0.057 0.943 23 H 0.043 0.957 24 H 0.064 0.936 25 H 0.070 0.930 26 H 0.055 0.945 27 H 0.098 0.902 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.082 0.918 31 H 0.342 0.658 32 H 0.073 0.927 33 H 0.032 0.968 34 H 0.048 0.952 35 H 0.043 0.957 36 H 0.020 0.980 37 H 0.020 0.980 38 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.617 9.187 -19.170 24.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.089 4.089 3 C -0.190 4.190 4 C -0.028 4.028 5 O -0.315 6.315 6 C -0.062 4.062 7 C -0.052 4.052 8 H 0.115 0.885 9 N -0.307 5.307 10 C -0.060 4.060 11 C -0.128 4.128 12 C -0.047 4.047 13 C -0.573 4.573 14 H 0.046 0.954 15 C -0.195 4.195 16 N -0.595 5.595 17 Si 0.778 3.222 18 H -0.190 1.190 19 H -0.210 1.210 20 H -0.168 1.168 21 H 0.073 0.927 22 H 0.076 0.924 23 H 0.062 0.938 24 H 0.083 0.917 25 H 0.089 0.911 26 H 0.074 0.926 27 H 0.116 0.884 28 H 0.092 0.908 29 H 0.094 0.906 30 H 0.101 0.899 31 H 0.161 0.839 32 H 0.091 0.909 33 H 0.050 0.950 34 H 0.067 0.933 35 H 0.062 0.938 36 H 0.038 0.962 37 H 0.038 0.962 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 11.245 9.552 -18.993 24.050 hybrid contribution 0.568 -0.926 0.889 1.404 sum 11.813 8.626 -18.103 23.274 Atomic orbital electron populations 1.21463 0.93079 1.01192 1.01257 1.21982 0.97355 0.96336 0.93243 1.21784 1.01017 0.93565 1.02608 1.23762 1.00829 0.81784 0.96443 1.89107 1.83326 1.27680 1.31428 1.24200 0.98139 0.99473 0.84422 1.23118 0.91497 0.95740 0.94796 0.88500 1.60601 1.32429 1.35956 1.01684 1.21946 0.95948 0.99969 0.88125 1.21253 0.97592 0.99472 0.94529 1.19485 0.95371 0.96112 0.93781 1.21532 0.97899 1.43058 0.94794 0.95400 1.26086 1.01068 0.94208 0.98166 1.70083 1.33714 1.46941 1.08752 0.85584 0.79819 0.78542 0.78231 1.19016 1.21004 1.16843 0.92727 0.92400 0.93807 0.91662 0.91113 0.92629 0.88393 0.90802 0.90593 0.89937 0.83908 0.90897 0.95013 0.93314 0.93822 0.96209 0.96157 0.92498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.29 7.48 71.98 0.54 -1.75 16 2 C -0.09 -1.59 1.05 -51.16 -0.05 -1.65 16 3 C -0.13 -1.89 8.31 71.98 0.60 -1.29 16 4 C 0.05 0.84 6.73 72.49 0.49 1.33 16 5 O -0.40 -9.28 11.65 -148.98 -1.74 -11.02 16 6 C 0.02 0.33 7.08 72.48 0.51 0.84 16 7 C 0.06 1.24 3.07 45.93 0.14 1.39 16 8 H 0.10 1.92 7.41 -2.39 -0.02 1.90 16 9 N -0.68 -17.62 4.54 -486.34 -2.21 -19.83 16 10 C 0.07 2.07 5.55 86.30 0.48 2.55 16 11 C -0.09 -3.56 5.41 30.59 0.17 -3.39 16 12 C -0.01 -0.45 4.04 29.85 0.12 -0.33 16 13 C -0.53 -31.66 9.66 25.60 0.25 -31.41 16 14 H 0.03 1.82 7.99 -2.91 -0.02 1.80 16 15 C 0.00 0.06 5.47 84.65 0.46 0.52 16 16 N -0.95 -61.06 13.96 21.45 0.30 -60.76 16 17 Si 0.96 44.61 27.47 68.60 1.88 46.49 16 18 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 19 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 20 H -0.25 -10.51 6.54 99.48 0.65 -9.86 16 21 H 0.05 1.29 7.86 -2.39 -0.02 1.27 16 22 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 23 H 0.04 1.00 7.61 -2.39 -0.02 0.98 16 24 H 0.06 0.79 8.08 -2.39 -0.02 0.77 16 25 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 26 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.10 1.54 7.87 -2.39 -0.02 1.52 16 28 H 0.07 1.04 7.83 -2.39 -0.02 1.02 16 29 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.08 1.82 8.02 -2.39 -0.02 1.81 16 31 H 0.34 9.22 8.06 -89.70 -0.72 8.50 16 32 H 0.07 2.12 8.08 -2.39 -0.02 2.10 16 33 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 35 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.02 0.90 7.20 -2.39 -0.02 0.89 16 37 H 0.02 0.92 7.57 -2.39 -0.02 0.90 16 38 H 0.27 15.82 8.31 -92.71 -0.77 15.05 16 Total: -1.00 -66.70 301.10 2.17 -64.53 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: 0.23 Total: 13.77 kcal Atomic # 6 Polarization: -36.90 SS G_CDS: 3.70 Total: -33.20 kcal Atomic # 7 Polarization: -78.68 SS G_CDS: -1.91 Total: -80.59 kcal Atomic # 8 Polarization: -9.28 SS G_CDS: -1.74 Total: -11.02 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 1.88 Total: 46.49 kcal Total: -66.70 2.17 -64.53 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313019427.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.361 kcal (2) G-P(sol) polarization free energy of solvation -66.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds