Wall clock time and date at job start Mon Mar 30 2020 02:47:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 110.27616 * 2 1 4 4 O 1.42904 * 109.46671 * 302.09105 * 3 2 1 5 5 C 1.54780 * 110.15317 * 237.80215 * 2 1 3 6 6 C 1.54935 * 102.83748 * 262.85094 * 5 2 1 7 7 N 1.48534 * 103.37361 * 322.79811 * 6 5 2 8 8 C 1.46902 * 111.00247 * 159.63844 * 7 6 5 9 9 C 1.53001 * 109.47358 * 184.25843 * 8 7 6 10 10 C 1.52996 * 109.46969 * 185.12395 * 9 8 7 11 11 C 1.50695 * 109.47043 * 179.97438 * 10 9 8 12 12 H 1.08008 * 120.00237 * 0.02562 * 11 10 9 13 13 C 1.37877 * 120.00442 * 179.97438 * 11 10 9 14 14 N 1.31519 * 120.00484 * 180.02562 * 13 11 10 15 15 Si 1.86806 * 119.99549 * 0.02562 * 13 11 10 16 16 H 1.48496 * 109.47235 * 89.99956 * 15 13 11 17 17 H 1.48500 * 109.46713 * 209.99832 * 15 13 11 18 18 H 1.48501 * 109.46969 * 329.99244 * 15 13 11 19 19 C 1.47897 * 105.82407 * 39.12243 * 7 6 5 20 20 H 1.09007 * 109.46807 * 297.91340 * 1 2 3 21 21 H 1.09001 * 109.47189 * 57.90926 * 1 2 3 22 22 H 1.09000 * 109.47472 * 177.91233 * 1 2 3 23 23 H 1.08996 * 109.46858 * 62.08678 * 3 2 1 24 24 H 1.08994 * 109.47187 * 182.09531 * 3 2 1 25 25 H 0.96699 * 113.99489 * 179.97438 * 4 3 2 26 26 H 1.08993 * 110.65431 * 144.56556 * 5 2 1 27 27 H 1.09008 * 110.87446 * 21.22758 * 5 2 1 28 28 H 1.09001 * 110.66705 * 204.28443 * 6 5 2 29 29 H 1.08994 * 110.67005 * 81.31019 * 6 5 2 30 30 H 1.08994 * 109.46798 * 304.26384 * 8 7 6 31 31 H 1.09004 * 109.46899 * 64.25764 * 8 7 6 32 32 H 1.09000 * 109.46874 * 305.12084 * 9 8 7 33 33 H 1.08993 * 109.46882 * 65.12495 * 9 8 7 34 34 H 1.08995 * 109.47190 * 300.00045 * 10 9 8 35 35 H 1.09002 * 109.47090 * 60.00333 * 10 9 8 36 36 H 0.96998 * 119.99682 * 180.02562 * 14 13 11 37 37 H 1.09001 * 109.91749 * 94.02273 * 19 7 6 38 38 H 1.08990 * 109.92259 * 215.12231 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0602 1.4352 0.0000 4 8 1.5538 2.1300 -1.1415 5 6 2.0633 -0.7742 -1.2296 6 6 2.3584 -2.1803 -0.6496 7 7 2.8809 -1.8884 0.7099 8 6 2.7668 -3.0653 1.5816 9 6 3.2146 -2.6966 2.9974 10 6 3.2177 -3.9505 3.8741 11 6 3.6594 -3.5875 5.2684 12 1 3.9122 -2.5646 5.5057 13 6 3.7398 -4.5609 6.2415 14 7 4.1248 -4.2440 7.4585 15 14 3.3018 -6.3300 5.8313 16 1 4.5169 -7.0455 5.3658 17 1 2.7660 -7.0009 7.0429 18 1 2.2744 -6.3497 4.7593 19 6 2.0646 -0.7672 1.2235 20 1 -0.3633 0.4811 0.9082 21 1 -0.3633 0.5460 -0.8706 22 1 -0.3634 -1.0270 -0.0374 23 1 1.7349 1.9427 0.9081 24 1 3.1494 1.4202 -0.0376 25 1 1.8495 3.0484 -1.2060 26 1 2.9758 -0.3136 -1.6078 27 1 1.3058 -0.8308 -2.0114 28 1 3.1105 -2.6935 -1.2488 29 1 1.4449 -2.7721 -0.5916 30 1 1.7303 -3.4014 1.6043 31 1 3.3998 -3.8651 1.1970 32 1 4.2193 -2.2752 2.9625 33 1 2.5269 -1.9621 3.4163 34 1 2.2131 -4.3719 3.9089 35 1 3.9056 -4.6850 3.4552 36 1 4.1817 -4.9290 8.1429 37 1 1.2324 -1.1531 1.8124 38 1 2.6805 -0.1102 1.8374 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381600009.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:33 Heat of formation + Delta-G solvation = -89.704910 kcal Electronic energy + Delta-G solvation = -16096.770924 eV Core-core repulsion = 13551.311820 eV Total energy + Delta-G solvation = -2545.459103 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.69151 -37.73698 -36.14895 -34.60621 -32.96358 -30.67436 -28.53345 -27.59751 -26.14532 -23.99177 -22.22883 -21.64637 -19.90393 -18.88795 -18.20958 -16.99798 -16.65891 -16.10735 -15.84184 -15.56100 -15.22225 -14.81100 -14.38730 -14.12032 -13.74917 -13.49482 -13.27436 -13.15323 -12.97944 -12.68764 -12.52819 -12.32484 -11.83644 -11.76611 -11.63721 -11.47074 -11.42546 -11.38141 -11.24223 -10.81723 -10.76666 -9.36239 -8.29883 -6.34287 1.35841 1.37668 1.49849 2.36187 3.04428 3.05407 3.24282 3.63163 3.68489 4.10428 4.15114 4.24052 4.33366 4.34821 4.47015 4.58765 4.61480 4.64694 4.72978 4.78756 4.85792 4.88183 4.95769 5.01197 5.05180 5.13459 5.20446 5.27814 5.38158 5.49459 5.57898 5.65202 5.97648 6.09246 6.29352 6.73642 6.93591 7.30383 8.87192 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.047885 B = 0.004973 C = 0.004741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 584.594790 B = 5629.608371 C = 5903.996344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.072 4.072 3 C 0.094 3.906 4 O -0.582 6.582 5 C -0.097 4.097 6 C 0.030 3.970 7 N -0.528 5.528 8 C 0.056 3.944 9 C -0.089 4.089 10 C -0.010 4.010 11 C -0.534 4.534 12 H 0.029 0.971 13 C 0.002 3.998 14 N -0.953 5.953 15 Si 0.954 3.046 16 H -0.265 1.265 17 H -0.283 1.283 18 H -0.246 1.246 19 C 0.045 3.955 20 H 0.054 0.946 21 H 0.067 0.933 22 H 0.050 0.950 23 H 0.050 0.950 24 H 0.050 0.950 25 H 0.395 0.605 26 H 0.072 0.928 27 H 0.081 0.919 28 H 0.088 0.912 29 H 0.046 0.954 30 H 0.034 0.966 31 H 0.078 0.922 32 H 0.048 0.952 33 H 0.044 0.956 34 H 0.019 0.981 35 H 0.020 0.980 36 H 0.266 0.734 37 H 0.043 0.957 38 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.751 8.163 -19.588 22.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.073 4.073 3 C 0.016 3.984 4 O -0.390 6.390 5 C -0.135 4.135 6 C -0.097 4.097 7 N -0.252 5.252 8 C -0.072 4.072 9 C -0.127 4.127 10 C -0.048 4.048 11 C -0.572 4.572 12 H 0.047 0.953 13 C -0.194 4.194 14 N -0.594 5.594 15 Si 0.777 3.223 16 H -0.190 1.190 17 H -0.209 1.209 18 H -0.170 1.170 19 C -0.083 4.083 20 H 0.073 0.927 21 H 0.086 0.914 22 H 0.069 0.931 23 H 0.068 0.932 24 H 0.068 0.932 25 H 0.245 0.755 26 H 0.091 0.909 27 H 0.100 0.900 28 H 0.106 0.894 29 H 0.064 0.936 30 H 0.053 0.947 31 H 0.096 0.904 32 H 0.067 0.933 33 H 0.063 0.937 34 H 0.037 0.963 35 H 0.038 0.962 36 H 0.075 0.925 37 H 0.061 0.939 38 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -6.451 7.658 -19.542 21.958 hybrid contribution -0.424 -0.327 0.929 1.072 sum -6.876 7.331 -18.613 21.154 Atomic orbital electron populations 1.21765 0.93140 1.01431 1.02301 1.21464 0.96569 0.94348 0.94925 1.22119 0.96918 0.91179 0.88140 1.86401 1.75675 1.30273 1.46655 1.22482 1.01253 0.93474 0.96291 1.23333 0.98816 0.97798 0.89754 1.64793 1.51316 1.06191 1.02861 1.22255 0.99351 0.92868 0.92719 1.21300 1.00339 0.97830 0.93246 1.19492 0.96318 0.95467 0.93490 1.21497 1.44862 0.95249 0.95549 0.95297 1.26060 0.94447 1.04383 0.94506 1.70079 1.49683 1.35769 1.03849 0.85606 0.79824 0.78537 0.78360 1.19009 1.20893 1.16977 1.22886 0.95647 0.93416 0.96320 0.92695 0.91402 0.93080 0.93156 0.93222 0.75518 0.90909 0.90019 0.89382 0.93601 0.94749 0.90396 0.93284 0.93678 0.96280 0.96150 0.92473 0.93889 0.91069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.61 8.06 71.98 0.58 -2.03 16 2 C -0.07 -1.56 0.77 -51.24 -0.04 -1.60 16 3 C 0.09 1.78 5.62 71.98 0.40 2.19 16 4 O -0.58 -9.87 12.71 -148.98 -1.89 -11.76 16 5 C -0.10 -2.00 5.97 31.86 0.19 -1.81 16 6 C 0.03 0.70 6.55 86.65 0.57 1.27 16 7 N -0.53 -15.20 5.36 -883.04 -4.73 -19.93 16 8 C 0.06 1.83 4.82 86.30 0.42 2.24 16 9 C -0.09 -3.63 4.91 30.59 0.15 -3.48 16 10 C -0.01 -0.47 4.04 29.84 0.12 -0.35 16 11 C -0.53 -31.71 9.66 25.60 0.25 -31.47 16 12 H 0.03 1.89 7.99 -2.91 -0.02 1.87 16 13 C 0.00 0.15 5.47 84.65 0.46 0.61 16 14 N -0.95 -60.94 13.96 21.45 0.30 -60.64 16 15 Si 0.95 44.88 27.47 68.60 1.88 46.77 16 16 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 17 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 18 H -0.25 -10.72 6.54 99.48 0.65 -10.07 16 19 C 0.05 1.22 4.79 86.45 0.41 1.64 16 20 H 0.05 1.09 8.14 -2.38 -0.02 1.07 16 21 H 0.07 1.33 7.62 -2.39 -0.02 1.31 16 22 H 0.05 1.03 8.14 -2.39 -0.02 1.02 16 23 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 24 H 0.05 0.95 8.12 -2.39 -0.02 0.93 16 25 H 0.40 3.21 9.12 -74.06 -0.68 2.53 16 26 H 0.07 1.52 7.85 -2.39 -0.02 1.50 16 27 H 0.08 1.52 7.86 -2.38 -0.02 1.50 16 28 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 29 H 0.05 1.03 7.94 -2.39 -0.02 1.01 16 30 H 0.03 1.08 8.00 -2.39 -0.02 1.06 16 31 H 0.08 2.44 8.14 -2.38 -0.02 2.42 16 32 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 33 H 0.04 1.86 7.13 -2.39 -0.02 1.84 16 34 H 0.02 0.89 7.20 -2.39 -0.02 0.87 16 35 H 0.02 0.94 7.57 -2.39 -0.02 0.92 16 36 H 0.27 15.82 8.31 -92.71 -0.77 15.05 16 37 H 0.04 1.23 6.98 -2.39 -0.02 1.21 16 38 H 0.07 2.01 7.69 -2.39 -0.02 1.99 16 Total: -1.00 -68.41 299.14 -0.65 -69.06 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: 0.28 Total: 9.31 kcal Atomic # 6 Polarization: -36.32 SS G_CDS: 3.51 Total: -32.80 kcal Atomic # 7 Polarization: -76.14 SS G_CDS: -4.43 Total: -80.57 kcal Atomic # 8 Polarization: -9.87 SS G_CDS: -1.89 Total: -11.76 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 1.88 Total: 46.77 kcal Total: -68.41 -0.65 -69.06 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381600009.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.645 kcal (2) G-P(sol) polarization free energy of solvation -68.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds