Wall clock time and date at job start Mon Mar 30 2020 02:47:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42901 * 110.35396 * 2 1 4 4 C 1.55034 * 110.45199 * 122.32181 * 2 1 3 5 5 C 1.54930 * 102.99846 * 140.68940 * 4 2 1 6 6 N 1.48535 * 103.22755 * 322.65440 * 5 4 2 7 7 C 1.46893 * 111.00017 * 159.72165 * 6 5 4 8 8 C 1.52998 * 109.47521 * 52.60365 * 7 6 5 9 9 C 1.52998 * 109.47193 * 180.02562 * 8 7 6 10 10 C 1.53001 * 109.46894 * 180.02562 * 9 8 7 11 11 C 1.50701 * 109.47241 * 179.97438 * 10 9 8 12 12 H 1.08005 * 119.99919 * 359.97438 * 11 10 9 13 13 C 1.37877 * 120.00311 * 179.97438 * 11 10 9 14 14 N 1.31508 * 119.99727 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 119.99950 * 179.97438 * 13 11 10 16 16 H 1.48506 * 109.46842 * 90.00234 * 15 13 11 17 17 H 1.48497 * 109.46842 * 210.00179 * 15 13 11 18 18 H 1.48500 * 109.47159 * 330.00329 * 15 13 11 19 19 C 1.47900 * 105.81903 * 39.20561 * 6 5 4 20 20 H 1.08992 * 109.47373 * 182.14269 * 1 2 3 21 21 H 1.08999 * 109.47063 * 302.14269 * 1 2 3 22 22 H 1.09005 * 109.46966 * 62.13580 * 1 2 3 23 23 H 0.96698 * 113.99851 * 57.85980 * 3 2 1 24 24 H 1.08998 * 110.63192 * 22.33144 * 4 2 1 25 25 H 1.09005 * 110.89526 * 259.17254 * 4 2 1 26 26 H 1.08995 * 110.66945 * 204.21634 * 5 4 2 27 27 H 1.09003 * 110.66832 * 81.08614 * 5 4 2 28 28 H 1.09005 * 109.47157 * 172.60745 * 7 6 5 29 29 H 1.09003 * 109.47284 * 292.60301 * 7 6 5 30 30 H 1.09005 * 109.47065 * 299.99811 * 8 7 6 31 31 H 1.09003 * 109.46893 * 59.99697 * 8 7 6 32 32 H 1.09000 * 109.47296 * 299.99284 * 9 8 7 33 33 H 1.08994 * 109.47416 * 60.00042 * 9 8 7 34 34 H 1.09005 * 109.47042 * 299.99409 * 10 9 8 35 35 H 1.08994 * 109.47968 * 59.99767 * 10 9 8 36 36 H 0.97001 * 119.99885 * 179.97438 * 14 13 11 37 37 H 1.09002 * 109.91739 * 94.02573 * 19 6 5 38 38 H 1.09002 * 109.91391 * 215.12207 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0271 1.3398 0.0000 4 6 2.0717 -0.7767 1.2275 5 6 3.2879 -1.5412 0.6472 6 7 2.8301 -1.9262 -0.7124 7 6 3.9715 -2.2292 -1.5860 8 6 4.8758 -3.2586 -0.9052 9 6 6.0649 -3.5736 -1.8150 10 6 6.9688 -4.6035 -1.1344 11 6 8.1398 -4.9144 -2.0307 12 1 8.2300 -4.4265 -2.9900 13 6 9.0959 -5.8216 -1.6261 14 7 8.9858 -6.4160 -0.4582 15 14 10.5470 -6.2074 -2.7375 16 1 11.6623 -5.2740 -2.4371 17 1 10.9931 -7.6040 -2.5020 18 1 10.1389 -6.0506 -4.1567 19 6 2.0645 -0.7683 -1.2229 20 1 -0.3634 -1.0268 0.0384 21 1 -0.3633 0.5467 0.8701 22 1 -0.3633 0.4803 -0.9086 23 1 1.7232 1.8720 0.7480 24 1 1.3219 -1.4729 1.6030 25 1 2.3868 -0.0904 2.0137 26 1 3.5066 -2.4263 1.2445 27 1 4.1599 -0.8898 0.5894 28 1 3.6084 -2.6331 -2.5311 29 1 4.5372 -1.3167 -1.7743 30 1 5.2389 -2.8546 0.0399 31 1 4.3100 -4.1711 -0.7169 32 1 5.7022 -3.9775 -2.7602 33 1 6.6305 -2.6611 -2.0028 34 1 7.3316 -4.2001 -0.1890 35 1 6.4031 -5.5161 -0.9468 36 1 9.6583 -7.0545 -0.1737 37 1 2.7162 -0.1226 -1.8114 38 1 1.2327 -1.1146 -1.8365 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385175664.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:29 Heat of formation + Delta-G solvation = -71.278718 kcal Electronic energy + Delta-G solvation = -15763.299844 eV Core-core repulsion = 13218.639760 eV Total energy + Delta-G solvation = -2544.660084 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.73305 -36.59741 -34.46824 -32.65599 -31.27054 -29.82072 -28.36165 -25.86803 -24.16576 -22.48335 -20.70904 -20.35014 -19.80755 -16.78987 -16.18887 -15.85024 -15.74374 -14.90160 -14.44236 -14.07973 -13.71963 -13.51958 -13.28088 -12.62446 -12.45444 -12.21195 -11.99204 -11.63435 -11.48078 -11.34777 -11.25089 -10.94403 -10.76732 -10.51148 -10.46050 -10.36184 -10.07156 -9.58762 -9.22684 -8.97754 -8.37722 -8.30051 -5.95355 -3.97405 3.34675 3.40560 3.44387 3.78161 4.17537 4.41710 4.49817 4.55116 4.65290 5.14580 5.22560 5.26358 5.40038 5.44423 5.47024 5.57694 5.62863 5.68830 5.80059 5.89418 5.92175 5.94497 5.98002 6.17374 6.30381 6.51233 6.83741 6.91267 6.99415 7.08789 7.26132 7.43576 7.73775 7.89784 8.05838 8.48918 9.10052 9.66319 11.16056 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.070486 B = 0.003948 C = 0.003884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 397.147704 B = 7090.193691 C = 7207.167981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.115 3.885 3 O -0.559 6.559 4 C -0.149 4.149 5 C 0.037 3.963 6 N -0.515 5.515 7 C 0.047 3.953 8 C -0.117 4.117 9 C -0.109 4.109 10 C 0.021 3.979 11 C -0.520 4.520 12 H 0.054 0.946 13 C 0.055 3.945 14 N -0.896 5.896 15 Si 0.891 3.109 16 H -0.281 1.281 17 H -0.287 1.287 18 H -0.274 1.274 19 C 0.046 3.954 20 H 0.072 0.928 21 H 0.057 0.943 22 H 0.063 0.937 23 H 0.375 0.625 24 H 0.081 0.919 25 H 0.074 0.926 26 H 0.087 0.913 27 H 0.049 0.951 28 H 0.074 0.926 29 H 0.034 0.966 30 H 0.056 0.944 31 H 0.065 0.935 32 H 0.047 0.953 33 H 0.044 0.956 34 H 0.014 0.986 35 H 0.016 0.984 36 H 0.260 0.740 37 H 0.057 0.943 38 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.591 13.009 2.799 21.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.074 3.926 3 O -0.365 6.365 4 C -0.188 4.188 5 C -0.091 4.091 6 N -0.240 5.240 7 C -0.081 4.081 8 C -0.154 4.154 9 C -0.147 4.147 10 C -0.016 4.016 11 C -0.558 4.558 12 H 0.072 0.928 13 C -0.145 4.145 14 N -0.536 5.536 15 Si 0.719 3.281 16 H -0.207 1.207 17 H -0.212 1.212 18 H -0.199 1.199 19 C -0.083 4.083 20 H 0.091 0.909 21 H 0.076 0.924 22 H 0.082 0.918 23 H 0.222 0.778 24 H 0.100 0.900 25 H 0.093 0.907 26 H 0.105 0.895 27 H 0.067 0.933 28 H 0.093 0.907 29 H 0.052 0.948 30 H 0.075 0.925 31 H 0.083 0.917 32 H 0.066 0.934 33 H 0.063 0.937 34 H 0.032 0.968 35 H 0.034 0.966 36 H 0.069 0.931 37 H 0.075 0.925 38 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -16.534 12.195 2.357 20.680 hybrid contribution 1.128 0.621 -0.075 1.290 sum -15.407 12.816 2.282 20.170 Atomic orbital electron populations 1.22410 0.94861 1.03117 1.02265 1.22156 0.92755 0.82248 0.95427 1.86585 1.75014 1.23321 1.51590 1.23297 0.98709 0.99589 0.97169 1.23189 0.96010 0.99149 0.90735 1.64930 1.22134 1.34296 1.02615 1.22451 0.90469 0.98618 0.96568 1.21719 0.96423 0.98115 0.99188 1.21599 0.95063 1.00024 0.98059 1.19090 0.93513 0.93308 0.95678 1.21298 1.07348 1.23691 1.03464 0.92766 1.25033 0.98205 0.96119 0.95186 1.69969 1.35271 1.28520 1.19842 0.86608 0.82883 0.77504 0.81090 1.20712 1.21236 1.19886 1.22859 0.98974 0.90950 0.95470 0.90920 0.92383 0.91844 0.77760 0.90025 0.90700 0.89484 0.93300 0.90734 0.94794 0.92538 0.91660 0.93384 0.93672 0.96771 0.96595 0.93071 0.92516 0.89511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.32 8.57 37.16 0.32 -1.00 16 2 C 0.12 1.17 1.39 -89.03 -0.12 1.04 16 3 O -0.56 -5.81 12.96 -35.23 -0.46 -6.27 16 4 C -0.15 -1.50 6.37 -24.64 -0.16 -1.66 16 5 C 0.04 0.48 5.10 -1.90 -0.01 0.47 16 6 N -0.52 -7.17 5.40 -230.46 -1.24 -8.41 16 7 C 0.05 0.72 5.03 -3.83 -0.02 0.70 16 8 C -0.12 -2.09 4.87 -26.73 -0.13 -2.22 16 9 C -0.11 -2.33 5.15 -26.73 -0.14 -2.47 16 10 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 11 C -0.52 -15.18 9.11 -34.44 -0.31 -15.49 16 12 H 0.05 1.54 7.74 -52.48 -0.41 1.13 16 13 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 14 N -0.90 -27.55 13.29 55.43 0.74 -26.82 16 15 Si 0.89 22.09 29.54 -169.99 -5.02 17.07 16 16 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 17 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 18 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 19 C 0.05 0.56 6.17 -2.75 -0.02 0.54 16 20 H 0.07 0.57 8.11 -51.93 -0.42 0.15 16 21 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 22 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 23 H 0.38 2.29 9.08 45.56 0.41 2.71 16 24 H 0.08 0.76 7.85 -51.93 -0.41 0.36 16 25 H 0.07 0.65 8.09 -51.93 -0.42 0.23 16 26 H 0.09 1.15 7.66 -51.93 -0.40 0.75 16 27 H 0.05 0.68 8.00 -51.93 -0.42 0.26 16 28 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 29 H 0.03 0.53 7.81 -51.93 -0.41 0.12 16 30 H 0.06 1.01 6.79 -51.93 -0.35 0.66 16 31 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 32 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 33 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 37 H 0.06 0.76 7.39 -51.93 -0.38 0.37 16 38 H 0.09 0.96 7.68 -51.93 -0.40 0.56 16 LS Contribution 304.36 15.07 4.59 4.59 Total: -1.00 -31.90 304.36 -8.34 -40.24 By element: Atomic # 1 Polarization: 3.86 SS G_CDS: -6.11 Total: -2.26 kcal Atomic # 6 Polarization: -17.31 SS G_CDS: -0.83 Total: -18.14 kcal Atomic # 7 Polarization: -34.72 SS G_CDS: -0.51 Total: -35.23 kcal Atomic # 8 Polarization: -5.81 SS G_CDS: -0.46 Total: -6.27 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -31.90 -8.34 -40.24 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385175664.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.042 kcal (2) G-P(sol) polarization free energy of solvation -31.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds