Wall clock time and date at job start Mon Mar 30 2020 02:49:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47286 * 2 1 4 4 C 1.52995 * 115.54998 * 294.83700 * 3 2 1 5 5 N 1.46901 * 109.47134 * 278.20668 * 4 3 2 6 6 C 1.46904 * 110.99912 * 174.37578 * 5 4 3 7 7 C 1.53000 * 109.46924 * 180.02562 * 6 5 4 8 8 O 1.42895 * 109.47219 * 64.99879 * 7 6 5 9 9 C 1.42907 * 114.00126 * 180.02562 * 8 7 6 10 10 C 1.50699 * 109.47522 * 180.02562 * 9 8 7 11 11 H 1.07999 * 119.99530 * 359.97438 * 10 9 8 12 12 C 1.37869 * 119.99986 * 180.02562 * 10 9 8 13 13 N 1.31518 * 119.99724 * 179.97438 * 12 10 9 14 14 Si 1.86798 * 120.00351 * 359.97438 * 12 10 9 15 15 H 1.48496 * 109.47272 * 89.99966 * 14 12 10 16 16 H 1.48495 * 109.47299 * 210.00327 * 14 12 10 17 17 H 1.48500 * 109.46876 * 330.00193 * 14 12 10 18 18 C 1.53000 * 117.51688 * 80.53349 * 3 2 1 19 19 C 1.52996 * 117.49818 * 149.16561 * 3 2 1 20 20 H 1.09001 * 109.46968 * 58.28034 * 1 2 3 21 21 H 1.09005 * 109.47111 * 178.27169 * 1 2 3 22 22 H 1.09000 * 109.47640 * 298.27496 * 1 2 3 23 23 H 1.08997 * 109.47013 * 239.99503 * 2 1 3 24 24 H 1.09002 * 109.46904 * 120.00120 * 2 1 3 25 25 H 1.08996 * 109.47294 * 158.20263 * 4 3 2 26 26 H 1.09000 * 109.47106 * 38.20620 * 4 3 2 27 27 H 1.00900 * 110.99894 * 298.33247 * 5 4 3 28 28 H 1.08997 * 109.47208 * 300.00215 * 6 5 4 29 29 H 1.08994 * 109.47026 * 60.00313 * 6 5 4 30 30 H 1.08996 * 109.47215 * 185.00578 * 7 6 5 31 31 H 1.09000 * 109.46943 * 305.00157 * 7 6 5 32 32 H 1.09005 * 109.46736 * 300.00619 * 9 8 7 33 33 H 1.08994 * 109.46951 * 59.99713 * 9 8 7 34 34 H 0.97005 * 120.00056 * 180.02562 * 13 12 10 35 35 H 1.08994 * 117.49822 * 214.97173 * 18 3 2 36 36 H 1.08999 * 117.49959 * 359.97438 * 18 3 2 37 37 H 1.08993 * 117.50183 * 359.97438 * 19 3 2 38 38 H 1.09000 * 117.49709 * 145.00311 * 19 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.7134 2.2578 -1.2527 5 7 2.6885 1.9479 -2.3068 6 6 2.3293 2.6109 -3.5676 7 6 3.3653 2.2646 -4.6389 8 8 3.3110 0.8644 -4.9192 9 6 4.2444 0.4337 -5.9118 10 6 4.0998 -1.0509 -6.1269 11 1 3.3685 -1.6096 -5.5617 12 6 4.9017 -1.6958 -7.0443 13 7 4.7758 -2.9915 -7.2316 14 14 6.1670 -0.7295 -8.0213 15 1 7.4544 -0.7103 -7.2815 16 1 6.3664 -1.3721 -9.3451 17 1 5.6861 0.6621 -8.2141 18 6 2.0653 2.1833 1.3384 19 6 3.3741 1.7200 0.6956 20 1 -0.3633 0.5403 -0.8742 21 1 -0.3633 -1.0272 -0.0310 22 1 -0.3634 0.4868 0.9050 23 1 1.8933 -0.5139 -0.8899 24 1 1.8933 -0.5139 0.8900 25 1 1.7592 3.3209 -1.0164 26 1 0.7112 2.0057 -1.5992 27 1 3.6229 2.1982 -2.0199 28 1 1.3457 2.2697 -3.8901 29 1 2.3084 3.6902 -3.4173 30 1 3.1494 2.8258 -5.5480 31 1 4.3608 2.5247 -4.2792 32 1 4.0471 0.9570 -6.8475 33 1 5.2579 0.6558 -5.5782 34 1 5.3403 -3.4454 -7.8768 35 1 1.8492 3.2515 1.3265 36 1 1.7181 1.6432 2.2193 37 1 3.8883 0.8751 1.1536 38 1 4.0191 2.4836 0.2608 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385838880.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:07 Heat of formation + Delta-G solvation = -34.319342 kcal Electronic energy + Delta-G solvation = -15727.865006 eV Core-core repulsion = 13184.807601 eV Total energy + Delta-G solvation = -2543.057405 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.83460 -37.04899 -34.78214 -32.53855 -31.82077 -29.51152 -27.45984 -24.95132 -23.68206 -22.34531 -21.78449 -21.45940 -18.74045 -16.86436 -16.17104 -15.60590 -15.36170 -15.06541 -14.65590 -14.17052 -13.86212 -13.62084 -13.20170 -12.67787 -12.54763 -12.16968 -12.09900 -11.88658 -11.58007 -11.46501 -11.15077 -10.91436 -10.76400 -10.64689 -10.43214 -10.02699 -9.81759 -9.70515 -9.11005 -8.77746 -8.39529 -8.13755 -6.06056 -4.04204 3.27828 3.34491 3.36130 3.66081 4.35997 4.39975 4.65335 4.71505 4.76782 4.93945 5.06042 5.25215 5.36239 5.44759 5.51628 5.55693 5.59084 5.62474 5.68125 5.79929 5.86928 5.90102 5.97046 6.05948 6.09124 6.17642 6.22823 6.38161 6.48678 6.66168 7.05938 7.20626 7.58128 7.66326 8.11688 8.74932 9.07561 9.53835 11.07197 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.033055 B = 0.005057 C = 0.004771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.871476 B = 5535.157704 C = 5867.535690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.084 4.084 3 C -0.109 4.109 4 C 0.096 3.904 5 N -0.671 5.671 6 C 0.065 3.935 7 C 0.061 3.939 8 O -0.364 6.364 9 C 0.167 3.833 10 C -0.514 4.514 11 H 0.083 0.917 12 C 0.071 3.929 13 N -0.897 5.897 14 Si 0.876 3.124 15 H -0.274 1.274 16 H -0.283 1.283 17 H -0.267 1.267 18 C -0.179 4.179 19 C -0.172 4.172 20 H 0.055 0.945 21 H 0.053 0.947 22 H 0.047 0.953 23 H 0.082 0.918 24 H 0.056 0.944 25 H 0.022 0.978 26 H 0.078 0.922 27 H 0.338 0.662 28 H 0.079 0.921 29 H 0.032 0.968 30 H 0.041 0.959 31 H 0.035 0.965 32 H 0.000 1.000 33 H -0.004 1.004 34 H 0.265 0.735 35 H 0.088 0.912 36 H 0.092 0.908 37 H 0.094 0.906 38 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.076 12.640 14.166 19.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.121 4.121 3 C -0.109 4.109 4 C -0.034 4.034 5 N -0.303 5.303 6 C -0.064 4.064 7 C -0.017 4.017 8 O -0.283 6.283 9 C 0.092 3.908 10 C -0.552 4.552 11 H 0.101 0.899 12 C -0.130 4.130 13 N -0.536 5.536 14 Si 0.703 3.297 15 H -0.200 1.200 16 H -0.209 1.209 17 H -0.192 1.192 18 C -0.217 4.217 19 C -0.209 4.209 20 H 0.075 0.925 21 H 0.072 0.928 22 H 0.066 0.934 23 H 0.100 0.900 24 H 0.075 0.925 25 H 0.040 0.960 26 H 0.096 0.904 27 H 0.156 0.844 28 H 0.097 0.903 29 H 0.050 0.950 30 H 0.059 0.941 31 H 0.053 0.947 32 H 0.017 0.983 33 H 0.014 0.986 34 H 0.075 0.925 35 H 0.107 0.893 36 H 0.110 0.890 37 H 0.113 0.887 38 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -5.441 11.754 13.956 19.041 hybrid contribution 1.243 1.572 -0.510 2.068 sum -4.197 13.326 13.446 19.391 Atomic orbital electron populations 1.21719 0.95921 1.01406 1.01378 1.21002 0.95463 0.93074 1.02605 1.21452 1.00654 0.96738 0.92074 1.21456 0.97085 0.94917 0.89895 1.60193 1.05094 1.62559 1.02417 1.21958 1.00190 0.94647 0.89581 1.22306 0.97095 0.86275 0.96018 1.88025 1.60351 1.19537 1.60344 1.20588 0.87556 0.96561 0.86124 1.20904 1.21343 0.90289 1.22662 0.89894 1.24765 0.96946 0.94817 0.96488 1.69884 1.39966 1.08219 1.35516 0.86855 0.82291 0.80633 0.79969 1.19994 1.20851 1.19203 1.23051 1.02128 1.00072 0.96426 1.22927 0.90685 1.03291 1.04016 0.92547 0.92820 0.93354 0.89964 0.92535 0.95972 0.90391 0.84375 0.90260 0.94971 0.94104 0.94719 0.98274 0.98613 0.92460 0.89315 0.88954 0.88745 0.89282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 9.80 37.16 0.36 -1.23 16 2 C -0.08 -1.02 5.82 -26.73 -0.16 -1.18 16 3 C -0.11 -1.24 1.73 -154.52 -0.27 -1.51 16 4 C 0.10 1.16 5.58 -3.83 -0.02 1.14 16 5 N -0.67 -9.85 6.42 -113.78 -0.73 -10.58 16 6 C 0.07 0.96 6.06 -3.82 -0.02 0.93 16 7 C 0.06 1.09 6.22 37.16 0.23 1.32 16 8 O -0.36 -8.72 10.27 -35.23 -0.36 -9.09 16 9 C 0.17 4.36 4.76 36.01 0.17 4.54 16 10 C -0.51 -15.67 9.99 -34.44 -0.34 -16.01 16 11 H 0.08 2.77 8.06 -52.49 -0.42 2.35 16 12 C 0.07 2.13 5.47 -17.82 -0.10 2.04 16 13 N -0.90 -28.15 13.96 55.43 0.77 -27.38 16 14 Si 0.88 21.77 27.47 -169.99 -4.67 17.10 16 15 H -0.27 -6.65 7.11 56.52 0.40 -6.24 16 16 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 17 H -0.27 -6.37 6.54 56.52 0.37 -6.00 16 18 C -0.18 -1.71 9.90 -26.73 -0.26 -1.98 16 19 C -0.17 -1.82 9.56 -26.73 -0.26 -2.08 16 20 H 0.06 0.63 6.68 -51.93 -0.35 0.29 16 21 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 22 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 23 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 24 H 0.06 0.63 8.09 -51.93 -0.42 0.21 16 25 H 0.02 0.24 7.93 -51.93 -0.41 -0.17 16 26 H 0.08 0.97 6.54 -51.93 -0.34 0.63 16 27 H 0.34 4.70 8.23 -39.29 -0.32 4.37 16 28 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 29 H 0.03 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.00 -0.01 7.20 -51.93 -0.37 -0.38 16 33 H 0.00 -0.10 7.57 -51.93 -0.39 -0.49 16 34 H 0.27 7.70 8.31 -40.82 -0.34 7.37 16 35 H 0.09 0.78 8.07 -51.93 -0.42 0.36 16 36 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 37 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.09 0.91 7.95 -51.93 -0.41 0.49 16 LS Contribution 311.64 15.07 4.70 4.70 Total: -1.00 -32.06 311.64 -7.79 -39.85 By element: Atomic # 1 Polarization: 6.25 SS G_CDS: -6.83 Total: -0.59 kcal Atomic # 6 Polarization: -13.35 SS G_CDS: -0.66 Total: -14.01 kcal Atomic # 7 Polarization: -38.00 SS G_CDS: 0.04 Total: -37.96 kcal Atomic # 8 Polarization: -8.72 SS G_CDS: -0.36 Total: -9.09 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.67 Total: 17.10 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -32.06 -7.79 -39.85 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385838880.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.529 kcal (2) G-P(sol) polarization free energy of solvation -32.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds