Wall clock time and date at job start Mon Mar 30 2020 02:49:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47286 * 2 1 4 4 C 1.52995 * 115.54998 * 294.83700 * 3 2 1 5 5 N 1.46901 * 109.47134 * 278.20668 * 4 3 2 6 6 C 1.46904 * 110.99912 * 174.37578 * 5 4 3 7 7 C 1.53000 * 109.46924 * 180.02562 * 6 5 4 8 8 O 1.42895 * 109.47219 * 64.99879 * 7 6 5 9 9 C 1.42907 * 114.00126 * 180.02562 * 8 7 6 10 10 C 1.50699 * 109.47522 * 180.02562 * 9 8 7 11 11 H 1.07999 * 119.99530 * 359.97438 * 10 9 8 12 12 C 1.37869 * 119.99986 * 180.02562 * 10 9 8 13 13 N 1.31518 * 119.99724 * 179.97438 * 12 10 9 14 14 Si 1.86798 * 120.00351 * 359.97438 * 12 10 9 15 15 H 1.48496 * 109.47272 * 89.99966 * 14 12 10 16 16 H 1.48495 * 109.47299 * 210.00327 * 14 12 10 17 17 H 1.48500 * 109.46876 * 330.00193 * 14 12 10 18 18 C 1.53000 * 117.51688 * 80.53349 * 3 2 1 19 19 C 1.52996 * 117.49818 * 149.16561 * 3 2 1 20 20 H 1.09001 * 109.46968 * 58.28034 * 1 2 3 21 21 H 1.09005 * 109.47111 * 178.27169 * 1 2 3 22 22 H 1.09000 * 109.47640 * 298.27496 * 1 2 3 23 23 H 1.08997 * 109.47013 * 239.99503 * 2 1 3 24 24 H 1.09002 * 109.46904 * 120.00120 * 2 1 3 25 25 H 1.08996 * 109.47294 * 158.20263 * 4 3 2 26 26 H 1.09000 * 109.47106 * 38.20620 * 4 3 2 27 27 H 1.00900 * 110.99894 * 298.33247 * 5 4 3 28 28 H 1.08997 * 109.47208 * 300.00215 * 6 5 4 29 29 H 1.08994 * 109.47026 * 60.00313 * 6 5 4 30 30 H 1.08996 * 109.47215 * 185.00578 * 7 6 5 31 31 H 1.09000 * 109.46943 * 305.00157 * 7 6 5 32 32 H 1.09005 * 109.46736 * 300.00619 * 9 8 7 33 33 H 1.08994 * 109.46951 * 59.99713 * 9 8 7 34 34 H 0.97005 * 120.00056 * 180.02562 * 13 12 10 35 35 H 1.08994 * 117.49822 * 214.97173 * 18 3 2 36 36 H 1.08999 * 117.49959 * 359.97438 * 18 3 2 37 37 H 1.08993 * 117.50183 * 359.97438 * 19 3 2 38 38 H 1.09000 * 117.49709 * 145.00311 * 19 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.7134 2.2578 -1.2527 5 7 2.6885 1.9479 -2.3068 6 6 2.3293 2.6109 -3.5676 7 6 3.3653 2.2646 -4.6389 8 8 3.3110 0.8644 -4.9192 9 6 4.2444 0.4337 -5.9118 10 6 4.0998 -1.0509 -6.1269 11 1 3.3685 -1.6096 -5.5617 12 6 4.9017 -1.6958 -7.0443 13 7 4.7758 -2.9915 -7.2316 14 14 6.1670 -0.7295 -8.0213 15 1 7.4544 -0.7103 -7.2815 16 1 6.3664 -1.3721 -9.3451 17 1 5.6861 0.6621 -8.2141 18 6 2.0653 2.1833 1.3384 19 6 3.3741 1.7200 0.6956 20 1 -0.3633 0.5403 -0.8742 21 1 -0.3633 -1.0272 -0.0310 22 1 -0.3634 0.4868 0.9050 23 1 1.8933 -0.5139 -0.8899 24 1 1.8933 -0.5139 0.8900 25 1 1.7592 3.3209 -1.0164 26 1 0.7112 2.0057 -1.5992 27 1 3.6229 2.1982 -2.0199 28 1 1.3457 2.2697 -3.8901 29 1 2.3084 3.6902 -3.4173 30 1 3.1494 2.8258 -5.5480 31 1 4.3608 2.5247 -4.2792 32 1 4.0471 0.9570 -6.8475 33 1 5.2579 0.6558 -5.5782 34 1 5.3403 -3.4454 -7.8768 35 1 1.8492 3.2515 1.3265 36 1 1.7181 1.6432 2.2193 37 1 3.8883 0.8751 1.1536 38 1 4.0191 2.4836 0.2608 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385838880.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:07 Heat of formation + Delta-G solvation = -56.547762 kcal Electronic energy + Delta-G solvation = -15728.828903 eV Core-core repulsion = 13184.807601 eV Total energy + Delta-G solvation = -2544.021302 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.76129 -38.67802 -36.05419 -34.76305 -32.71976 -31.05948 -29.31277 -26.05683 -24.59593 -23.94572 -23.25414 -22.63080 -19.68314 -19.02782 -17.59750 -17.00868 -16.78920 -16.28530 -16.03945 -15.55262 -15.24339 -14.68996 -14.57024 -14.50468 -13.80957 -13.63765 -13.12101 -13.07555 -12.93833 -12.69727 -12.51729 -12.31369 -12.18011 -11.92664 -11.80197 -11.56435 -11.31423 -10.92505 -10.89509 -10.58229 -10.28627 -9.18944 -8.35905 -6.43579 1.33203 1.36925 1.47773 2.30438 2.79421 2.96543 3.13715 3.40988 3.80512 3.86999 4.04039 4.18310 4.23335 4.29456 4.49641 4.54306 4.57755 4.64653 4.67587 4.70450 4.76876 4.81369 4.92449 4.95876 5.05523 5.06570 5.17406 5.27153 5.29675 5.43123 5.46116 5.50300 5.96174 6.17345 6.53383 6.61069 6.83285 7.21288 8.81661 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.033055 B = 0.005057 C = 0.004771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.871476 B = 5535.157704 C = 5867.535690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.083 4.083 3 C -0.127 4.127 4 C 0.100 3.900 5 N -0.697 5.697 6 C 0.072 3.928 7 C 0.051 3.949 8 O -0.394 6.394 9 C 0.179 3.821 10 C -0.544 4.544 11 H 0.026 0.974 12 C 0.012 3.988 13 N -0.944 5.944 14 Si 0.958 3.042 15 H -0.259 1.259 16 H -0.273 1.273 17 H -0.245 1.245 18 C -0.156 4.156 19 C -0.178 4.178 20 H 0.048 0.952 21 H 0.051 0.949 22 H 0.066 0.934 23 H 0.043 0.957 24 H 0.063 0.937 25 H 0.042 0.958 26 H 0.070 0.930 27 H 0.341 0.659 28 H 0.067 0.933 29 H 0.070 0.930 30 H 0.057 0.943 31 H 0.048 0.952 32 H 0.010 0.990 33 H 0.008 0.992 34 H 0.273 0.727 35 H 0.103 0.897 36 H 0.102 0.898 37 H 0.091 0.909 38 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.159 15.405 14.461 21.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.121 4.121 3 C -0.127 4.127 4 C -0.029 4.029 5 N -0.329 5.329 6 C -0.057 4.057 7 C -0.026 4.026 8 O -0.314 6.314 9 C 0.103 3.897 10 C -0.582 4.582 11 H 0.045 0.955 12 C -0.186 4.186 13 N -0.584 5.584 14 Si 0.779 3.221 15 H -0.184 1.184 16 H -0.198 1.198 17 H -0.169 1.169 18 C -0.194 4.194 19 C -0.215 4.215 20 H 0.067 0.933 21 H 0.070 0.930 22 H 0.085 0.915 23 H 0.062 0.938 24 H 0.082 0.918 25 H 0.060 0.940 26 H 0.088 0.912 27 H 0.160 0.840 28 H 0.085 0.915 29 H 0.087 0.913 30 H 0.075 0.925 31 H 0.066 0.934 32 H 0.028 0.972 33 H 0.026 0.974 34 H 0.082 0.918 35 H 0.121 0.879 36 H 0.120 0.880 37 H 0.109 0.891 38 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -4.544 14.536 14.275 20.874 hybrid contribution 0.875 0.652 -0.517 1.207 sum -3.669 15.188 13.758 20.819 Atomic orbital electron populations 1.21685 0.94949 1.01477 1.01904 1.20940 0.96374 0.93740 1.01025 1.21416 1.01884 0.96324 0.93072 1.21435 0.95979 0.96034 0.89409 1.60156 1.05914 1.63593 1.03226 1.21897 0.98416 0.96632 0.88745 1.22694 0.99031 0.83017 0.97857 1.87981 1.59980 1.23639 1.59789 1.20289 0.88554 0.93607 0.87263 1.21175 1.20960 0.92946 1.23073 0.95529 1.25868 0.99347 0.95975 0.97404 1.70047 1.41364 1.10525 1.36448 0.85569 0.78782 0.79634 0.78082 1.18407 1.19770 1.16878 1.23106 1.00372 1.00683 0.95215 1.22981 0.90888 1.03486 1.04166 0.93319 0.92956 0.91491 0.93807 0.91819 0.94040 0.91193 0.84012 0.91474 0.91263 0.92459 0.93355 0.97198 0.97418 0.91832 0.87883 0.87979 0.89093 0.88803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.07 9.80 71.98 0.71 -2.36 16 2 C -0.08 -2.05 5.82 30.59 0.18 -1.87 16 3 C -0.13 -2.76 1.73 -52.19 -0.09 -2.85 16 4 C 0.10 2.30 5.58 86.30 0.48 2.79 16 5 N -0.70 -19.92 6.42 -513.90 -3.30 -23.22 16 6 C 0.07 1.99 6.06 86.30 0.52 2.52 16 7 C 0.05 1.73 6.22 71.98 0.45 2.18 16 8 O -0.39 -19.03 10.27 -148.98 -1.53 -20.56 16 9 C 0.18 9.26 4.76 71.24 0.34 9.60 16 10 C -0.54 -34.26 9.99 25.60 0.26 -34.00 16 11 H 0.03 1.90 8.06 -2.91 -0.02 1.87 16 12 C 0.01 0.71 5.47 84.65 0.46 1.17 16 13 N -0.94 -60.77 13.96 21.44 0.30 -60.47 16 14 Si 0.96 44.18 27.47 68.60 1.88 46.06 16 15 H -0.26 -11.32 7.11 99.48 0.71 -10.62 16 16 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 17 H -0.25 -10.39 6.54 99.48 0.65 -9.74 16 18 C -0.16 -2.59 9.90 30.60 0.30 -2.28 16 19 C -0.18 -3.51 9.56 30.59 0.29 -3.22 16 20 H 0.05 1.10 6.68 -2.39 -0.02 1.09 16 21 H 0.05 1.11 8.14 -2.38 -0.02 1.09 16 22 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 23 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 24 H 0.06 1.43 8.09 -2.39 -0.02 1.41 16 25 H 0.04 0.80 7.93 -2.39 -0.02 0.78 16 26 H 0.07 1.70 6.54 -2.39 -0.02 1.69 16 27 H 0.34 9.11 8.23 -89.69 -0.74 8.37 16 28 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 29 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.05 1.50 8.14 -2.39 -0.02 1.49 16 32 H 0.01 0.51 7.20 -2.38 -0.02 0.49 16 33 H 0.01 0.40 7.57 -2.39 -0.02 0.38 16 34 H 0.27 16.04 8.31 -92.70 -0.77 15.27 16 35 H 0.10 1.44 8.07 -2.39 -0.02 1.42 16 36 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 38 H 0.09 1.75 7.95 -2.39 -0.02 1.73 16 Total: -1.00 -71.66 311.64 1.47 -70.20 By element: Atomic # 1 Polarization: 16.13 SS G_CDS: 0.21 Total: 16.34 kcal Atomic # 6 Polarization: -32.25 SS G_CDS: 3.90 Total: -28.35 kcal Atomic # 7 Polarization: -80.69 SS G_CDS: -3.00 Total: -83.69 kcal Atomic # 8 Polarization: -19.03 SS G_CDS: -1.53 Total: -20.56 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 1.88 Total: 46.06 kcal Total: -71.66 1.47 -70.20 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385838880.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.649 kcal (2) G-P(sol) polarization free energy of solvation -71.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds