Wall clock time and date at job start Mon Mar 30 2020 03:35:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 N 1.46297 * 114.00577 * 2 1 4 4 C 1.46898 * 111.00655 * 115.35936 * 3 2 1 5 5 C 1.52992 * 109.47221 * 191.59089 * 4 3 2 6 6 C 1.53007 * 109.47073 * 64.00720 * 5 4 3 7 7 C 1.53006 * 109.47055 * 184.00540 * 5 4 3 8 8 C 1.46907 * 110.99966 * 239.32140 * 3 2 1 9 9 C 1.53000 * 109.47394 * 64.07530 * 8 3 2 10 10 C 1.50701 * 115.54907 * 55.72844 * 9 8 3 11 11 H 1.08000 * 119.99824 * 215.48233 * 10 9 8 12 12 C 1.37883 * 119.99903 * 35.20209 * 10 9 8 13 13 N 1.31513 * 119.99914 * 17.02852 * 12 10 9 14 14 Si 1.86799 * 119.99817 * 197.02823 * 12 10 9 15 15 H 1.48504 * 109.46882 * 64.99912 * 14 12 10 16 16 H 1.48504 * 109.47031 * 184.99679 * 14 12 10 17 17 H 1.48498 * 109.47260 * 304.99722 * 14 12 10 18 18 C 1.52991 * 117.49957 * 201.39786 * 9 8 3 19 19 C 1.52993 * 117.49805 * 270.06039 * 9 8 3 20 20 H 1.09006 * 109.46705 * 64.82803 * 1 2 3 21 21 H 1.09003 * 109.47435 * 184.82788 * 1 2 3 22 22 H 1.09002 * 109.47647 * 304.83528 * 1 2 3 23 23 H 1.09001 * 109.46968 * 311.59974 * 4 3 2 24 24 H 1.09008 * 109.46713 * 71.59211 * 4 3 2 25 25 H 1.08993 * 109.47354 * 304.00776 * 5 4 3 26 26 H 1.09008 * 109.46737 * 65.89851 * 6 5 4 27 27 H 1.09000 * 109.46823 * 185.89635 * 6 5 4 28 28 H 1.08999 * 109.46827 * 305.89980 * 6 5 4 29 29 H 1.08994 * 109.47064 * 60.00164 * 7 5 4 30 30 H 1.08995 * 109.47218 * 180.02562 * 7 5 4 31 31 H 1.09003 * 109.47158 * 300.00419 * 7 5 4 32 32 H 1.09000 * 109.46419 * 304.07787 * 8 3 2 33 33 H 1.09001 * 109.47111 * 184.08037 * 8 3 2 34 34 H 0.97000 * 119.99692 * 174.75528 * 13 12 10 35 35 H 1.09001 * 117.50388 * 215.00549 * 18 9 8 36 36 H 1.09005 * 117.50085 * 0.02562 * 18 9 8 37 37 H 1.09003 * 117.50248 * 359.96979 * 19 9 8 38 38 H 1.09002 * 117.50070 * 144.97663 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 7 2.0241 1.3364 0.0000 4 6 2.7749 1.5785 1.2392 5 6 3.1348 3.0624 1.3358 6 6 1.8537 3.8918 1.4449 7 6 4.0015 3.2973 2.5747 8 6 2.8775 1.5327 -1.1795 9 6 2.0204 1.4700 -2.4454 10 6 0.8620 2.4326 -2.4942 11 1 -0.0650 2.1386 -2.9641 12 6 0.9836 3.6866 -1.9340 13 7 2.1749 4.1724 -1.6615 14 14 -0.5439 4.6955 -1.5620 15 1 -1.3444 4.0133 -0.5136 16 1 -0.1428 6.0419 -1.0808 17 1 -1.3588 4.8332 -2.7958 18 6 2.7288 1.1498 -3.7630 19 6 1.8300 0.1015 -3.1025 20 1 -0.3633 0.4371 -0.9301 21 1 -0.3634 -1.0240 0.0865 22 1 -0.3634 0.5870 0.8435 23 1 2.1627 1.2964 2.0959 24 1 3.6878 0.9829 1.2331 25 1 3.6863 3.3613 0.4445 26 1 1.3553 3.6682 2.3882 27 1 2.1032 4.9522 1.4083 28 1 1.1900 3.6459 0.6160 29 1 4.9141 2.7065 2.4970 30 1 4.2575 4.3545 2.6438 31 1 3.4499 2.9984 3.4660 32 1 3.6348 0.7494 -1.2143 33 1 3.3642 2.5061 -1.1180 34 1 2.2653 5.0827 -1.3388 35 1 2.3571 1.6353 -4.6654 36 1 3.8055 0.9833 -3.7282 37 1 2.3157 -0.7541 -2.6333 38 1 0.8666 -0.1027 -3.5699 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000389216964.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:35 Heat of formation + Delta-G solvation = 23.690234 kcal Electronic energy + Delta-G solvation = -17553.436037 eV Core-core repulsion = 15012.894116 eV Total energy + Delta-G solvation = -2540.541921 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -37.58768 -35.74411 -34.86062 -32.02229 -31.31657 -26.54229 -26.23309 -25.55988 -25.06397 -22.27633 -20.99214 -19.34111 -18.74478 -16.43040 -15.50290 -14.88447 -14.58813 -14.36451 -13.89303 -13.51078 -13.21530 -12.98547 -12.83982 -12.07809 -11.93053 -11.62634 -11.40825 -11.24467 -10.97547 -10.86566 -10.60480 -10.37685 -10.29192 -10.14366 -10.08355 -9.74958 -9.31456 -9.05840 -8.83591 -8.51536 -7.88514 -7.49128 -5.95109 -3.88566 3.34672 3.39157 3.44867 3.62225 4.46766 5.10328 5.42711 5.52871 5.63065 5.69169 5.88942 5.99197 6.15765 6.20815 6.25869 6.29665 6.33665 6.35742 6.41465 6.47667 6.57541 6.69955 6.75182 6.77973 6.84675 6.90409 7.01472 7.06945 7.17990 7.31873 7.44244 7.58834 7.99132 8.03275 8.11747 8.58896 9.01474 9.66976 11.09762 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.017883 B = 0.015332 C = 0.011337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.329818 B = 1825.809532 C = 2469.244600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.053 3.947 2 O -0.281 6.281 3 N -0.322 5.322 4 C 0.048 3.952 5 C -0.084 4.084 6 C -0.137 4.137 7 C -0.143 4.143 8 C 0.085 3.915 9 C 0.071 3.929 10 C -0.476 4.476 11 H 0.053 0.947 12 C 0.093 3.907 13 N -0.872 5.872 14 Si 0.875 3.125 15 H -0.275 1.275 16 H -0.288 1.288 17 H -0.282 1.282 18 C -0.209 4.209 19 C -0.205 4.205 20 H 0.056 0.944 21 H 0.064 0.936 22 H 0.029 0.971 23 H 0.065 0.935 24 H 0.024 0.976 25 H 0.090 0.910 26 H 0.031 0.969 27 H 0.040 0.960 28 H 0.087 0.913 29 H 0.047 0.953 30 H 0.053 0.947 31 H 0.047 0.953 32 H -0.001 1.001 33 H 0.133 0.867 34 H 0.260 0.740 35 H 0.076 0.924 36 H 0.059 0.941 37 H 0.064 0.936 38 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.116 -2.125 5.886 6.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 O -0.283 6.283 3 N -0.092 5.092 4 C -0.081 4.081 5 C -0.103 4.103 6 C -0.194 4.194 7 C -0.201 4.201 8 C -0.042 4.042 9 C 0.070 3.930 10 C -0.513 4.513 11 H 0.072 0.928 12 C -0.110 4.110 13 N -0.509 5.509 14 Si 0.703 3.297 15 H -0.200 1.200 16 H -0.213 1.213 17 H -0.208 1.208 18 C -0.247 4.247 19 C -0.242 4.242 20 H 0.074 0.926 21 H 0.082 0.918 22 H 0.048 0.952 23 H 0.083 0.917 24 H 0.042 0.958 25 H 0.108 0.892 26 H 0.051 0.949 27 H 0.059 0.941 28 H 0.105 0.895 29 H 0.066 0.934 30 H 0.072 0.928 31 H 0.066 0.934 32 H 0.017 0.983 33 H 0.150 0.850 34 H 0.071 0.929 35 H 0.095 0.905 36 H 0.078 0.922 37 H 0.083 0.917 38 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 0.910 -1.858 6.018 6.364 hybrid contribution -0.288 0.018 0.193 0.347 sum 0.622 -1.840 6.211 6.508 Atomic orbital electron populations 1.22388 0.81952 0.99119 1.01033 1.90498 1.19970 1.21010 1.96854 1.67729 1.34012 1.05684 1.01752 1.22397 0.95981 0.96198 0.93484 1.21047 0.97238 0.93433 0.98579 1.21778 0.97882 0.98123 1.01652 1.21838 0.99253 1.01092 0.97942 1.22220 0.92040 1.01057 0.88862 1.18753 0.95521 0.91254 0.87497 1.20233 0.96884 0.97762 1.36379 0.92849 1.24660 0.95026 0.97000 0.94309 1.69775 1.21421 1.15015 1.44731 0.86967 0.84551 0.79238 0.78900 1.20029 1.21338 1.20808 1.22990 0.95457 1.05420 1.00849 1.22821 0.99759 0.94059 1.07594 0.92577 0.91778 0.95227 0.91663 0.95768 0.89155 0.94941 0.94121 0.89455 0.93364 0.92768 0.93369 0.98328 0.84956 0.92936 0.90515 0.92203 0.91745 0.91184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.02 11.51 101.05 1.16 2.19 16 2 O -0.28 -6.16 10.32 -13.92 -0.14 -6.30 16 3 N -0.32 -7.12 3.76 -113.78 -0.43 -7.55 16 4 C 0.05 0.92 4.83 -3.83 -0.02 0.91 16 5 C -0.08 -1.52 2.87 -90.62 -0.26 -1.78 16 6 C -0.14 -2.62 8.76 37.16 0.33 -2.29 16 7 C -0.14 -2.08 9.19 37.16 0.34 -1.73 16 8 C 0.09 2.00 4.32 -3.82 -0.02 1.99 16 9 C 0.07 1.73 1.73 -155.67 -0.27 1.46 16 10 C -0.48 -12.51 8.36 -34.44 -0.29 -12.80 16 11 H 0.05 1.44 7.87 -52.49 -0.41 1.03 16 12 C 0.09 2.38 4.14 -17.82 -0.07 2.31 16 13 N -0.87 -22.13 10.01 55.43 0.55 -21.58 16 14 Si 0.88 20.53 28.40 -169.99 -4.83 15.70 16 15 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 16 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 17 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 18 C -0.21 -4.84 9.96 -26.70 -0.27 -5.11 16 19 C -0.20 -4.66 9.60 -26.70 -0.26 -4.92 16 20 H 0.06 1.19 7.77 -51.93 -0.40 0.79 16 21 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 22 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 23 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 24 H 0.02 0.45 8.11 -51.92 -0.42 0.03 16 25 H 0.09 1.83 6.15 -51.93 -0.32 1.51 16 26 H 0.03 0.56 8.14 -51.92 -0.42 0.13 16 27 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.09 1.94 4.61 -51.93 -0.24 1.70 16 29 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.00 -0.03 8.10 -51.93 -0.42 -0.45 16 33 H 0.13 3.26 4.07 -51.93 -0.21 3.04 16 34 H 0.26 6.43 8.32 -40.82 -0.34 6.09 16 35 H 0.08 1.79 8.14 -51.93 -0.42 1.37 16 36 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 37 H 0.06 1.43 8.14 -51.93 -0.42 1.00 16 38 H 0.07 1.57 8.14 -51.93 -0.42 1.14 16 LS Contribution 301.77 15.07 4.55 4.55 Total: -1.00 -26.16 301.77 -6.55 -32.71 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: -6.64 Total: 2.24 kcal Atomic # 6 Polarization: -20.16 SS G_CDS: 0.38 Total: -19.77 kcal Atomic # 7 Polarization: -29.25 SS G_CDS: 0.13 Total: -29.12 kcal Atomic # 8 Polarization: -6.16 SS G_CDS: -0.14 Total: -6.30 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -4.83 Total: 15.70 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -26.16 -6.55 -32.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389216964.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.398 kcal (2) G-P(sol) polarization free energy of solvation -26.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.708 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds