Wall clock time and date at job start Mon Mar 30 2020 02:47:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46906 * 110.99793 * 2 1 4 4 C 1.52996 * 109.47022 * 293.95609 * 3 2 1 5 5 C 1.50708 * 109.46924 * 180.02562 * 4 3 2 6 6 H 1.07994 * 119.99744 * 0.02562 * 5 4 3 7 7 C 1.37876 * 119.99843 * 180.02562 * 5 4 3 8 8 N 1.31518 * 120.00112 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99862 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.47126 * 0.02562 * 9 7 5 11 11 H 1.48508 * 109.47144 * 119.99745 * 9 7 5 12 12 H 1.48497 * 109.47332 * 239.99818 * 9 7 5 13 13 C 1.46898 * 111.00443 * 123.95328 * 2 1 3 14 14 H 1.09003 * 110.80223 * 298.22769 * 13 2 1 15 15 C 1.54989 * 110.91102 * 174.59221 * 13 2 1 16 16 O 1.44377 * 103.49366 * 204.77964 * 15 13 2 17 17 C 1.43752 * 106.97370 * 40.06358 * 16 15 13 18 18 C 1.52994 * 109.87916 * 92.90982 * 17 16 15 19 19 C 1.52996 * 109.87660 * 214.06531 * 17 16 15 20 20 C 1.54101 * 107.29115 * 333.48322 * 17 16 15 21 21 H 1.09002 * 109.47401 * 59.99808 * 1 2 3 22 22 H 1.09001 * 109.46874 * 299.99821 * 1 2 3 23 23 H 1.09004 * 109.46970 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.46995 * 53.95554 * 3 2 1 25 25 H 1.09001 * 109.46848 * 173.95560 * 3 2 1 26 26 H 1.08997 * 109.47190 * 299.99825 * 4 3 2 27 27 H 1.09001 * 109.47349 * 60.00258 * 4 3 2 28 28 H 0.96998 * 119.99904 * 179.97438 * 8 7 5 29 29 H 1.09004 * 110.61736 * 323.28508 * 15 13 2 30 30 H 1.09002 * 110.61879 * 86.27627 * 15 13 2 31 31 H 1.09001 * 109.47122 * 61.45509 * 18 17 16 32 32 H 1.09000 * 109.47198 * 181.45433 * 18 17 16 33 33 H 1.08997 * 109.47134 * 301.45231 * 18 17 16 34 34 H 1.08996 * 109.47374 * 58.53863 * 19 17 16 35 35 H 1.09000 * 109.47249 * 178.54641 * 19 17 16 36 36 H 1.08999 * 109.47039 * 298.54151 * 19 17 16 37 37 H 1.08996 * 110.49120 * 243.35384 * 20 17 16 38 38 H 1.09000 * 110.48522 * 120.70975 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6314 2.0575 -1.3182 5 6 2.1719 3.4643 -1.3184 6 1 2.7206 3.8320 -0.4640 7 6 1.9660 4.2817 -2.4095 8 7 1.2982 3.8337 -3.4502 9 14 2.6354 6.0256 -2.4095 10 1 3.3445 6.2836 -1.1305 11 1 3.5816 6.1927 -3.5418 12 1 1.5130 6.9867 -2.5564 13 6 1.9956 -0.7659 1.1375 14 1 1.6844 -0.3195 2.0820 15 6 3.5394 -0.8790 1.0612 16 8 3.8272 -2.0765 1.8145 17 6 2.8114 -3.0371 1.4799 18 6 3.2887 -3.9174 0.3232 19 6 2.4928 -3.9036 2.6999 20 6 1.5573 -2.2485 1.0555 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.5611 1.9274 0.8309 25 1 3.0797 1.3445 0.1082 26 1 2.0657 1.5016 -2.1491 27 1 0.5471 2.0845 -1.4264 28 1 1.1530 4.4089 -4.2175 29 1 3.8656 -0.9885 0.0268 30 1 4.0111 -0.0119 1.5236 31 1 4.1828 -4.4623 0.6262 32 1 2.5039 -4.6259 0.0580 33 1 3.5193 -3.2913 -0.5387 34 1 2.1603 -3.2678 3.5203 35 1 1.7041 -4.6121 2.4464 36 1 3.3872 -4.4485 3.0021 37 1 0.7342 -2.4417 1.7434 38 1 1.2718 -2.5061 0.0356 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396556530.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:15 Heat of formation + Delta-G solvation = -75.580615 kcal Electronic energy + Delta-G solvation = -16383.938864 eV Core-core repulsion = 13839.092236 eV Total energy + Delta-G solvation = -2544.846628 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.07638 -38.16019 -35.18867 -34.07833 -32.38761 -30.49263 -28.31941 -28.03107 -26.29106 -25.37124 -22.46969 -21.18558 -20.91134 -18.60438 -17.55847 -16.97847 -16.47689 -16.12464 -15.82739 -15.34514 -14.96127 -14.74360 -14.17305 -14.12569 -13.88799 -13.55421 -13.20943 -13.06165 -12.92508 -12.85376 -12.58412 -12.52598 -12.30279 -12.14337 -11.72623 -11.72106 -11.57524 -11.28345 -11.16308 -10.63405 -10.54461 -9.26646 -8.20398 -6.31448 1.40174 1.40693 1.53800 2.39633 2.71385 3.13382 3.17380 3.53922 3.77718 3.94058 4.13905 4.17567 4.27333 4.31173 4.44509 4.61328 4.68833 4.71788 4.72445 4.78003 4.84359 4.92111 4.97699 4.98792 5.03546 5.04587 5.13301 5.28091 5.40921 5.46150 5.64291 5.77218 5.97020 6.06200 6.27461 6.31016 6.85741 7.37787 8.91938 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.050495 B = 0.005264 C = 0.005093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 554.378017 B = 5318.348720 C = 5496.803879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.540 5.540 3 C 0.076 3.924 4 C 0.037 3.963 5 C -0.544 4.544 6 H 0.059 0.941 7 C 0.003 3.997 8 N -0.931 5.931 9 Si 0.965 3.035 10 H -0.262 1.262 11 H -0.278 1.278 12 H -0.278 1.278 13 C 0.049 3.951 14 H 0.052 0.948 15 C 0.058 3.942 16 O -0.385 6.385 17 C 0.089 3.911 18 C -0.160 4.160 19 C -0.138 4.138 20 C -0.131 4.131 21 H 0.053 0.947 22 H 0.024 0.976 23 H 0.087 0.913 24 H 0.020 0.980 25 H 0.064 0.936 26 H -0.007 1.007 27 H -0.003 1.003 28 H 0.264 0.736 29 H 0.060 0.940 30 H 0.090 0.910 31 H 0.063 0.937 32 H 0.084 0.916 33 H 0.045 0.955 34 H 0.059 0.941 35 H 0.089 0.911 36 H 0.063 0.937 37 H 0.092 0.908 38 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.474 -14.260 10.625 17.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.266 5.266 3 C -0.051 4.051 4 C -0.001 4.001 5 C -0.583 4.583 6 H 0.077 0.923 7 C -0.195 4.195 8 N -0.571 5.571 9 Si 0.789 3.211 10 H -0.186 1.186 11 H -0.204 1.204 12 H -0.203 1.203 13 C -0.060 4.060 14 H 0.069 0.931 15 C -0.019 4.019 16 O -0.304 6.304 17 C 0.050 3.950 18 C -0.217 4.217 19 C -0.195 4.195 20 C -0.169 4.169 21 H 0.072 0.928 22 H 0.043 0.957 23 H 0.106 0.894 24 H 0.038 0.962 25 H 0.083 0.917 26 H 0.011 0.989 27 H 0.015 0.985 28 H 0.072 0.928 29 H 0.078 0.922 30 H 0.108 0.892 31 H 0.082 0.918 32 H 0.102 0.898 33 H 0.064 0.936 34 H 0.078 0.922 35 H 0.108 0.892 36 H 0.082 0.918 37 H 0.111 0.889 38 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 0.751 -14.500 10.194 17.741 hybrid contribution -0.188 1.620 0.073 1.632 sum 0.563 -12.881 10.267 16.481 Atomic orbital electron populations 1.22365 0.86841 1.02357 1.00330 1.62104 1.08685 1.14253 1.41537 1.22039 0.98873 0.86621 0.97591 1.18918 0.95185 0.93630 0.92357 1.21650 1.35261 0.98999 1.02345 0.92284 1.25930 0.95390 1.03151 0.95026 1.70111 1.42014 1.38178 1.06822 0.85403 0.78209 0.78995 0.78458 1.18629 1.20363 1.20317 1.23190 0.95528 0.95109 0.92189 0.93050 1.23458 0.94041 0.87956 0.96463 1.88862 1.50733 1.24281 1.66529 1.22332 0.86681 0.89785 0.96189 1.22229 1.02482 0.99738 0.97273 1.21900 1.02606 0.99176 0.95840 1.23072 0.98212 0.92114 1.03511 0.92805 0.95715 0.89412 0.96198 0.91720 0.98895 0.98496 0.92754 0.92221 0.89200 0.91756 0.89760 0.93555 0.92191 0.89223 0.91801 0.88922 0.89626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.94 9.13 127.69 1.17 2.11 16 2 N -0.54 -19.36 4.60 -889.39 -4.10 -23.46 16 3 C 0.08 3.24 4.77 86.30 0.41 3.65 16 4 C 0.04 1.96 4.90 29.85 0.15 2.10 16 5 C -0.54 -31.23 9.11 25.60 0.23 -30.99 16 6 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 7 C 0.00 0.18 5.46 84.65 0.46 0.64 16 8 N -0.93 -56.98 13.29 21.45 0.28 -56.69 16 9 Si 0.96 44.43 29.54 68.60 2.03 46.46 16 10 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 11 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 12 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 13 C 0.05 1.43 2.80 46.22 0.13 1.56 16 14 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 15 C 0.06 1.74 6.06 72.66 0.44 2.18 16 16 O -0.38 -11.02 10.86 -148.98 -1.62 -12.64 16 17 C 0.09 2.02 1.19 -10.42 -0.01 2.00 16 18 C -0.16 -3.30 8.61 71.98 0.62 -2.68 16 19 C -0.14 -2.37 8.67 71.98 0.62 -1.75 16 20 C -0.13 -3.06 4.81 31.59 0.15 -2.90 16 21 H 0.05 2.03 6.47 -2.39 -0.02 2.01 16 22 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 23 H 0.09 2.30 6.89 -2.38 -0.02 2.28 16 24 H 0.02 0.84 8.12 -2.39 -0.02 0.82 16 25 H 0.06 2.69 6.68 -2.39 -0.02 2.68 16 26 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 27 H 0.00 -0.19 6.55 -2.39 -0.02 -0.20 16 28 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 29 H 0.06 1.95 8.13 -2.39 -0.02 1.93 16 30 H 0.09 2.66 7.79 -2.39 -0.02 2.64 16 31 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.05 1.11 8.13 -2.39 -0.02 1.09 16 34 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.09 1.78 7.70 -2.39 -0.02 1.76 16 38 H 0.09 2.06 7.28 -2.39 -0.02 2.04 16 Total: -1.00 -64.51 300.05 1.97 -62.55 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: 1.00 Total: 7.85 kcal Atomic # 6 Polarization: -28.44 SS G_CDS: 4.37 Total: -24.06 kcal Atomic # 7 Polarization: -76.34 SS G_CDS: -3.81 Total: -80.15 kcal Atomic # 8 Polarization: -11.02 SS G_CDS: -1.62 Total: -12.64 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.46 kcal Total: -64.51 1.97 -62.55 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396556530.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.034 kcal (2) G-P(sol) polarization free energy of solvation -64.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds