Wall clock time and date at job start Mon Mar 30 2020 02:48:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 110.54176 * 2 1 4 4 N 1.46895 * 109.47037 * 61.15785 * 3 2 1 5 5 C 1.46906 * 110.99642 * 180.02562 * 4 3 2 6 6 C 1.53002 * 109.46958 * 180.02562 * 5 4 3 7 7 C 1.52998 * 109.47129 * 180.02562 * 6 5 4 8 8 C 1.50703 * 109.47068 * 179.97438 * 7 6 5 9 9 H 1.07999 * 119.99982 * 0.02562 * 8 7 6 10 10 C 1.37880 * 119.99678 * 179.97438 * 8 7 6 11 11 N 1.31512 * 119.99648 * 180.02562 * 10 8 7 12 12 Si 1.86793 * 120.00280 * 0.02562 * 10 8 7 13 13 H 1.48503 * 109.46787 * 89.99677 * 12 10 8 14 14 H 1.48492 * 109.47249 * 209.99773 * 12 10 8 15 15 H 1.48499 * 109.47303 * 330.00474 * 12 10 8 16 16 C 1.54807 * 110.49176 * 237.37721 * 2 1 3 17 17 C 1.54994 * 102.09860 * 262.20556 * 16 2 1 18 18 O 1.44586 * 103.58334 * 323.05571 * 17 16 2 19 19 C 1.43746 * 106.86832 * 39.87548 * 18 17 16 20 20 H 1.08993 * 109.47327 * 298.83755 * 1 2 3 21 21 H 1.08999 * 109.46786 * 58.84269 * 1 2 3 22 22 H 1.09005 * 109.47088 * 178.83992 * 1 2 3 23 23 H 1.09004 * 109.47191 * 181.16184 * 3 2 1 24 24 H 1.09001 * 109.46623 * 301.15755 * 3 2 1 25 25 H 1.00904 * 110.99992 * 56.04838 * 4 3 2 26 26 H 1.08987 * 109.47360 * 300.00204 * 5 4 3 27 27 H 1.08995 * 109.46807 * 60.00597 * 5 4 3 28 28 H 1.09004 * 109.47213 * 300.00247 * 6 5 4 29 29 H 1.08997 * 109.46976 * 59.99852 * 6 5 4 30 30 H 1.08998 * 109.47530 * 300.00280 * 7 6 5 31 31 H 1.09000 * 109.46967 * 59.99969 * 7 6 5 32 32 H 0.96998 * 120.00356 * 179.97438 * 11 10 8 33 33 H 1.09007 * 110.90637 * 20.40937 * 16 2 1 34 34 H 1.09003 * 110.91046 * 143.96983 * 16 2 1 35 35 H 1.08999 * 110.61668 * 81.47212 * 17 16 2 36 36 H 1.08994 * 110.62187 * 204.31922 * 17 16 2 37 37 H 1.09002 * 109.87826 * 214.17174 * 19 18 17 38 38 H 1.08996 * 109.87812 * 93.17072 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0668 1.4328 0.0000 4 7 1.6130 2.1257 1.2132 5 6 2.1101 3.5077 1.2471 6 6 1.6186 4.1952 2.5225 7 6 2.1357 5.6347 2.5576 8 6 1.6510 6.3122 3.8135 9 1 1.0360 5.7701 4.5165 10 6 1.9936 7.6237 4.0654 11 7 1.5711 8.2147 5.1617 12 14 3.0580 8.5611 2.8499 13 1 2.1909 9.2392 1.8531 14 1 3.8635 9.5751 3.5765 15 1 3.9655 7.6142 2.1535 16 6 2.0719 -0.7818 -1.2213 17 6 2.3781 -2.1717 -0.6076 18 8 2.8746 -1.8575 0.7136 19 6 2.0693 -0.7780 1.2160 20 1 -0.3633 0.4956 0.9002 21 1 -0.3633 0.5317 -0.8794 22 1 -0.3633 -1.0275 -0.0208 23 1 3.1565 1.4125 -0.0208 24 1 1.6964 1.9595 -0.8795 25 1 1.8890 1.6213 2.0423 26 1 3.1999 3.5022 1.2347 27 1 1.7395 4.0485 0.3764 28 1 0.5286 4.2007 2.5353 29 1 1.9894 3.6542 3.3930 30 1 3.2256 5.6297 2.5445 31 1 1.7645 6.1755 1.6870 32 1 1.8123 9.1373 5.3392 33 1 1.3141 -0.8592 -2.0011 34 1 2.9794 -0.3184 -1.6084 35 1 1.4699 -2.7707 -0.5416 36 1 3.1373 -2.6908 -1.1925 37 1 2.6772 -0.1201 1.8370 38 1 1.2390 -1.1755 1.7996 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397271176.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:04 Heat of formation + Delta-G solvation = -67.967959 kcal Electronic energy + Delta-G solvation = -15778.134769 eV Core-core repulsion = 13233.618251 eV Total energy + Delta-G solvation = -2544.516519 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.08929 -36.65623 -34.41594 -32.88345 -31.20838 -29.75553 -27.27311 -26.39074 -24.71431 -22.82355 -21.77389 -20.23090 -19.32315 -16.91398 -16.53239 -16.01695 -15.51896 -15.20293 -14.63943 -14.19564 -13.87938 -13.79245 -13.30159 -12.80328 -12.73332 -12.47514 -12.28257 -11.84926 -11.67084 -11.53866 -11.05192 -10.93608 -10.80988 -10.75876 -10.71454 -9.94221 -9.86617 -9.71530 -9.55213 -9.15635 -8.51957 -8.26243 -6.02272 -3.99978 3.31742 3.38903 3.42653 3.73247 4.09321 4.34556 4.46854 4.61393 4.70044 4.89951 5.02345 5.04052 5.31623 5.39092 5.43149 5.47135 5.54845 5.56689 5.65823 5.69839 5.71867 5.81314 5.95120 5.97964 6.17351 6.21536 6.54437 6.56904 6.65108 6.92944 7.18806 7.35292 7.44429 7.53892 7.82236 8.56972 9.03297 9.60378 11.11360 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.057124 B = 0.004170 C = 0.004110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 490.044981 B = 6712.705201 C = 6810.448586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.092 4.092 3 C 0.072 3.928 4 N -0.689 5.689 5 C 0.057 3.943 6 C -0.099 4.099 7 C -0.013 4.013 8 C -0.519 4.519 9 H 0.072 0.928 10 C 0.065 3.935 11 N -0.905 5.905 12 Si 0.881 3.119 13 H -0.277 1.277 14 H -0.288 1.288 15 H -0.266 1.266 16 C -0.148 4.148 17 C 0.047 3.953 18 O -0.381 6.381 19 C 0.053 3.947 20 H 0.074 0.926 21 H 0.056 0.944 22 H 0.048 0.952 23 H 0.030 0.970 24 H 0.074 0.926 25 H 0.337 0.663 26 H 0.024 0.976 27 H 0.067 0.933 28 H 0.062 0.938 29 H 0.051 0.949 30 H 0.013 0.987 31 H 0.011 0.989 32 H 0.262 0.738 33 H 0.082 0.918 34 H 0.077 0.923 35 H 0.059 0.941 36 H 0.090 0.910 37 H 0.081 0.919 38 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.730 -18.763 -13.554 23.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.093 4.093 3 C -0.058 4.058 4 N -0.321 5.321 5 C -0.072 4.072 6 C -0.137 4.137 7 C -0.051 4.051 8 C -0.557 4.557 9 H 0.090 0.910 10 C -0.136 4.136 11 N -0.544 5.544 12 Si 0.708 3.292 13 H -0.203 1.203 14 H -0.214 1.214 15 H -0.191 1.191 16 C -0.186 4.186 17 C -0.030 4.030 18 O -0.300 6.300 19 C -0.024 4.024 20 H 0.093 0.907 21 H 0.075 0.925 22 H 0.067 0.933 23 H 0.048 0.952 24 H 0.092 0.908 25 H 0.155 0.845 26 H 0.042 0.958 27 H 0.085 0.915 28 H 0.081 0.919 29 H 0.070 0.930 30 H 0.031 0.969 31 H 0.029 0.971 32 H 0.072 0.928 33 H 0.100 0.900 34 H 0.096 0.904 35 H 0.077 0.923 36 H 0.108 0.892 37 H 0.099 0.901 38 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 0.302 -18.511 -13.608 22.977 hybrid contribution 1.311 0.657 -0.460 1.537 sum 1.612 -17.854 -14.068 22.787 Atomic orbital electron populations 1.21740 0.92549 1.00879 1.03439 1.21980 0.97418 0.95321 0.94541 1.21960 0.96746 0.92372 0.94676 1.60557 1.63930 1.03517 1.04055 1.22150 0.96607 0.87815 1.00617 1.21443 1.01039 0.97018 0.94237 1.19543 0.96044 0.92121 0.97390 1.21157 1.32338 0.97123 1.05071 0.91023 1.25045 0.95751 0.97594 0.95220 1.69918 1.46124 1.12776 1.25581 0.86759 0.81096 0.79766 0.81533 1.20302 1.21423 1.19119 1.23243 1.01914 0.95685 0.97725 1.23545 0.99251 0.96318 0.83859 1.88911 1.56798 1.52973 1.31286 1.23339 0.94941 0.88319 0.95755 0.90712 0.92456 0.93341 0.95231 0.90793 0.84459 0.95793 0.91477 0.91934 0.93041 0.96867 0.97070 0.92778 0.89973 0.90440 0.92259 0.89192 0.90056 0.91842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.22 8.09 37.16 0.30 -0.92 16 2 C -0.09 -0.90 0.77 -152.98 -0.12 -1.02 16 3 C 0.07 0.83 4.46 -3.82 -0.02 0.81 16 4 N -0.69 -9.36 5.88 -113.78 -0.67 -10.03 16 5 C 0.06 0.92 5.69 -3.82 -0.02 0.90 16 6 C -0.10 -1.98 5.41 -26.73 -0.14 -2.13 16 7 C -0.01 -0.32 4.04 -27.88 -0.11 -0.43 16 8 C -0.52 -15.07 9.66 -34.44 -0.33 -15.40 16 9 H 0.07 2.23 7.99 -52.49 -0.42 1.81 16 10 C 0.06 1.92 5.47 -17.82 -0.10 1.82 16 11 N -0.90 -28.31 13.96 55.43 0.77 -27.54 16 12 Si 0.88 22.02 27.47 -169.99 -4.67 17.35 16 13 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 14 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 15 H -0.27 -6.40 6.54 56.52 0.37 -6.03 16 16 C -0.15 -1.22 6.27 -24.73 -0.15 -1.38 16 17 C 0.05 0.40 7.72 38.21 0.29 0.70 16 18 O -0.38 -4.51 11.54 -35.23 -0.41 -4.92 16 19 C 0.05 0.57 6.59 37.73 0.25 0.82 16 20 H 0.07 0.81 7.75 -51.93 -0.40 0.41 16 21 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 22 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 23 H 0.03 0.35 8.13 -51.93 -0.42 -0.07 16 24 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 25 H 0.34 4.38 7.00 -39.29 -0.28 4.10 16 26 H 0.02 0.39 8.14 -51.94 -0.42 -0.04 16 27 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 28 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 29 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.01 0.32 7.20 -51.93 -0.37 -0.06 16 31 H 0.01 0.26 7.57 -51.93 -0.39 -0.13 16 32 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 33 H 0.08 0.57 7.86 -51.93 -0.41 0.16 16 34 H 0.08 0.65 7.86 -51.93 -0.41 0.24 16 35 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.08 0.90 6.49 -51.93 -0.34 0.56 16 38 H 0.06 0.64 7.69 -51.93 -0.40 0.24 16 LS Contribution 300.90 15.07 4.53 4.53 Total: -1.00 -31.11 300.90 -7.40 -38.52 By element: Atomic # 1 Polarization: 5.11 SS G_CDS: -6.81 Total: -1.70 kcal Atomic # 6 Polarization: -16.07 SS G_CDS: -0.16 Total: -16.23 kcal Atomic # 7 Polarization: -37.67 SS G_CDS: 0.10 Total: -37.56 kcal Atomic # 8 Polarization: -4.51 SS G_CDS: -0.41 Total: -4.92 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -4.67 Total: 17.35 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -31.11 -7.40 -38.52 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397271176.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.450 kcal (2) G-P(sol) polarization free energy of solvation -31.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds