Wall clock time and date at job start Mon Mar 30 2020 02:48:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 110.54176 * 2 1 4 4 N 1.46895 * 109.47037 * 61.15785 * 3 2 1 5 5 C 1.46906 * 110.99642 * 180.02562 * 4 3 2 6 6 C 1.53002 * 109.46958 * 180.02562 * 5 4 3 7 7 C 1.52998 * 109.47129 * 180.02562 * 6 5 4 8 8 C 1.50703 * 109.47068 * 179.97438 * 7 6 5 9 9 H 1.07999 * 119.99982 * 0.02562 * 8 7 6 10 10 C 1.37880 * 119.99678 * 179.97438 * 8 7 6 11 11 N 1.31512 * 119.99648 * 180.02562 * 10 8 7 12 12 Si 1.86793 * 120.00280 * 0.02562 * 10 8 7 13 13 H 1.48503 * 109.46787 * 89.99677 * 12 10 8 14 14 H 1.48492 * 109.47249 * 209.99773 * 12 10 8 15 15 H 1.48499 * 109.47303 * 330.00474 * 12 10 8 16 16 C 1.54807 * 110.49176 * 237.37721 * 2 1 3 17 17 C 1.54994 * 102.09860 * 262.20556 * 16 2 1 18 18 O 1.44586 * 103.58334 * 323.05571 * 17 16 2 19 19 C 1.43746 * 106.86832 * 39.87548 * 18 17 16 20 20 H 1.08993 * 109.47327 * 298.83755 * 1 2 3 21 21 H 1.08999 * 109.46786 * 58.84269 * 1 2 3 22 22 H 1.09005 * 109.47088 * 178.83992 * 1 2 3 23 23 H 1.09004 * 109.47191 * 181.16184 * 3 2 1 24 24 H 1.09001 * 109.46623 * 301.15755 * 3 2 1 25 25 H 1.00904 * 110.99992 * 56.04838 * 4 3 2 26 26 H 1.08987 * 109.47360 * 300.00204 * 5 4 3 27 27 H 1.08995 * 109.46807 * 60.00597 * 5 4 3 28 28 H 1.09004 * 109.47213 * 300.00247 * 6 5 4 29 29 H 1.08997 * 109.46976 * 59.99852 * 6 5 4 30 30 H 1.08998 * 109.47530 * 300.00280 * 7 6 5 31 31 H 1.09000 * 109.46967 * 59.99969 * 7 6 5 32 32 H 0.96998 * 120.00356 * 179.97438 * 11 10 8 33 33 H 1.09007 * 110.90637 * 20.40937 * 16 2 1 34 34 H 1.09003 * 110.91046 * 143.96983 * 16 2 1 35 35 H 1.08999 * 110.61668 * 81.47212 * 17 16 2 36 36 H 1.08994 * 110.62187 * 204.31922 * 17 16 2 37 37 H 1.09002 * 109.87826 * 214.17174 * 19 18 17 38 38 H 1.08996 * 109.87812 * 93.17072 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0668 1.4328 0.0000 4 7 1.6130 2.1257 1.2132 5 6 2.1101 3.5077 1.2471 6 6 1.6186 4.1952 2.5225 7 6 2.1357 5.6347 2.5576 8 6 1.6510 6.3122 3.8135 9 1 1.0360 5.7701 4.5165 10 6 1.9936 7.6237 4.0654 11 7 1.5711 8.2147 5.1617 12 14 3.0580 8.5611 2.8499 13 1 2.1909 9.2392 1.8531 14 1 3.8635 9.5751 3.5765 15 1 3.9655 7.6142 2.1535 16 6 2.0719 -0.7818 -1.2213 17 6 2.3781 -2.1717 -0.6076 18 8 2.8746 -1.8575 0.7136 19 6 2.0693 -0.7780 1.2160 20 1 -0.3633 0.4956 0.9002 21 1 -0.3633 0.5317 -0.8794 22 1 -0.3633 -1.0275 -0.0208 23 1 3.1565 1.4125 -0.0208 24 1 1.6964 1.9595 -0.8795 25 1 1.8890 1.6213 2.0423 26 1 3.1999 3.5022 1.2347 27 1 1.7395 4.0485 0.3764 28 1 0.5286 4.2007 2.5353 29 1 1.9894 3.6542 3.3930 30 1 3.2256 5.6297 2.5445 31 1 1.7645 6.1755 1.6870 32 1 1.8123 9.1373 5.3392 33 1 1.3141 -0.8592 -2.0011 34 1 2.9794 -0.3184 -1.6084 35 1 1.4699 -2.7707 -0.5416 36 1 3.1373 -2.6908 -1.1925 37 1 2.6772 -0.1201 1.8370 38 1 1.2390 -1.1755 1.7996 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397271176.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:04 Heat of formation + Delta-G solvation = -89.313469 kcal Electronic energy + Delta-G solvation = -15779.060380 eV Core-core repulsion = 13233.618251 eV Total energy + Delta-G solvation = -2545.442129 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.87662 -37.81976 -35.86046 -34.53460 -32.84231 -30.57552 -28.75511 -27.30347 -25.91450 -24.03146 -22.89724 -21.93029 -20.19810 -18.91397 -17.59657 -16.80367 -16.61542 -16.40537 -16.00904 -15.59081 -15.22684 -14.84715 -14.69106 -14.07170 -13.86170 -13.70571 -13.40407 -13.26079 -12.89315 -12.56705 -12.47681 -12.35818 -11.92504 -11.78197 -11.70469 -11.47977 -11.47041 -11.38123 -11.16973 -10.76564 -10.65105 -9.36035 -8.29598 -6.34022 1.35851 1.37933 1.50056 2.36388 3.01151 3.05633 3.11926 3.56597 3.80216 3.91098 4.15804 4.22395 4.26869 4.32985 4.36175 4.62844 4.67401 4.71389 4.73720 4.81625 4.85853 4.90235 4.93276 4.97513 5.05062 5.10931 5.19344 5.22703 5.45911 5.51043 5.60977 5.66225 5.89440 6.07374 6.29406 6.43155 6.74430 7.30631 8.87521 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.057124 B = 0.004170 C = 0.004110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 490.044981 B = 6712.705201 C = 6810.448586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.088 4.088 3 C 0.074 3.926 4 N -0.691 5.691 5 C 0.070 3.930 6 C -0.091 4.091 7 C -0.010 4.010 8 C -0.535 4.535 9 H 0.029 0.971 10 C 0.001 3.999 11 N -0.953 5.953 12 Si 0.955 3.045 13 H -0.265 1.265 14 H -0.284 1.284 15 H -0.246 1.246 16 C -0.142 4.142 17 C 0.041 3.959 18 O -0.406 6.406 19 C 0.051 3.949 20 H 0.057 0.943 21 H 0.061 0.939 22 H 0.060 0.940 23 H 0.028 0.972 24 H 0.078 0.922 25 H 0.340 0.660 26 H 0.028 0.972 27 H 0.072 0.928 28 H 0.050 0.950 29 H 0.045 0.955 30 H 0.019 0.981 31 H 0.020 0.980 32 H 0.266 0.734 33 H 0.100 0.900 34 H 0.077 0.923 35 H 0.070 0.930 36 H 0.104 0.896 37 H 0.073 0.927 38 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.575 -19.466 -16.133 25.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.088 4.088 3 C -0.055 4.055 4 N -0.323 5.323 5 C -0.059 4.059 6 C -0.129 4.129 7 C -0.048 4.048 8 C -0.573 4.573 9 H 0.047 0.953 10 C -0.196 4.196 11 N -0.594 5.594 12 Si 0.778 3.222 13 H -0.190 1.190 14 H -0.210 1.210 15 H -0.170 1.170 16 C -0.180 4.180 17 C -0.035 4.035 18 O -0.325 6.325 19 C -0.026 4.026 20 H 0.076 0.924 21 H 0.080 0.920 22 H 0.079 0.921 23 H 0.046 0.954 24 H 0.097 0.903 25 H 0.158 0.842 26 H 0.047 0.953 27 H 0.090 0.910 28 H 0.069 0.931 29 H 0.064 0.936 30 H 0.037 0.963 31 H 0.038 0.962 32 H 0.075 0.925 33 H 0.119 0.881 34 H 0.096 0.904 35 H 0.088 0.912 36 H 0.123 0.877 37 H 0.091 0.909 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 1.141 -19.245 -16.199 25.181 hybrid contribution 0.982 0.805 0.424 1.339 sum 2.122 -18.440 -15.775 24.360 Atomic orbital electron populations 1.21699 0.92187 1.01560 1.02777 1.21935 0.97575 0.94256 0.95082 1.21998 0.96721 0.93161 0.93582 1.60499 1.63998 1.02589 1.05198 1.21881 0.96690 0.89025 0.98327 1.21267 1.00165 0.95132 0.96341 1.19493 0.96204 0.94157 0.94988 1.21532 1.31846 0.97552 1.06340 0.95258 1.26085 0.97354 0.98764 0.97364 1.70078 1.47921 1.13448 1.27968 0.85585 0.79332 0.78377 0.78898 1.19005 1.20953 1.16971 1.23233 1.02401 0.95016 0.97313 1.23762 1.00242 0.96770 0.82678 1.88885 1.57488 1.53245 1.32916 1.23350 0.94786 0.88288 0.96147 0.92369 0.92022 0.92080 0.95354 0.90342 0.84158 0.95338 0.90969 0.93119 0.93644 0.96292 0.96185 0.92484 0.88150 0.90382 0.91166 0.87746 0.90927 0.91635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.12 8.09 71.98 0.58 -1.54 16 2 C -0.09 -1.55 0.77 -51.19 -0.04 -1.59 16 3 C 0.07 1.56 4.46 86.31 0.39 1.94 16 4 N -0.69 -17.79 5.88 -513.89 -3.02 -20.82 16 5 C 0.07 2.14 5.69 86.30 0.49 2.63 16 6 C -0.09 -3.59 5.41 30.59 0.17 -3.42 16 7 C -0.01 -0.50 4.04 29.85 0.12 -0.38 16 8 C -0.53 -31.67 9.66 25.60 0.25 -31.42 16 9 H 0.03 1.91 7.99 -2.91 -0.02 1.89 16 10 C 0.00 0.04 5.47 84.66 0.46 0.51 16 11 N -0.95 -60.98 13.96 21.45 0.30 -60.68 16 12 Si 0.96 44.79 27.47 68.60 1.88 46.68 16 13 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 14 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 15 H -0.25 -10.67 6.54 99.48 0.65 -10.02 16 16 C -0.14 -1.96 6.27 31.89 0.20 -1.76 16 17 C 0.04 0.61 7.72 72.66 0.56 1.18 16 18 O -0.41 -9.04 11.54 -148.98 -1.72 -10.76 16 19 C 0.05 1.04 6.59 72.36 0.48 1.51 16 20 H 0.06 1.19 7.75 -2.39 -0.02 1.17 16 21 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 22 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 23 H 0.03 0.61 8.13 -2.38 -0.02 0.59 16 24 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 25 H 0.34 8.53 7.00 -89.69 -0.63 7.90 16 26 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 27 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 28 H 0.05 2.09 8.14 -2.38 -0.02 2.07 16 29 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 30 H 0.02 0.87 7.20 -2.39 -0.02 0.86 16 31 H 0.02 0.91 7.57 -2.39 -0.02 0.89 16 32 H 0.27 15.82 8.31 -92.71 -0.77 15.05 16 33 H 0.10 1.04 7.86 -2.38 -0.02 1.02 16 34 H 0.08 1.09 7.86 -2.39 -0.02 1.07 16 35 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.07 1.56 6.49 -2.39 -0.02 1.54 16 38 H 0.07 1.27 7.69 -2.39 -0.02 1.25 16 Total: -1.00 -67.31 300.90 1.42 -65.89 By element: Atomic # 1 Polarization: 11.71 SS G_CDS: 0.32 Total: 12.04 kcal Atomic # 6 Polarization: -36.00 SS G_CDS: 3.65 Total: -32.35 kcal Atomic # 7 Polarization: -78.77 SS G_CDS: -2.72 Total: -81.50 kcal Atomic # 8 Polarization: -9.04 SS G_CDS: -1.72 Total: -10.76 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 1.88 Total: 46.68 kcal Total: -67.31 1.42 -65.89 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397271176.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.421 kcal (2) G-P(sol) polarization free energy of solvation -67.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds