Wall clock time and date at job start Mon Mar 30 2020 03:35:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42898 * 113.99883 * 2 1 4 4 C 1.53006 * 109.47163 * 60.00000 * 3 2 1 5 5 C 1.52998 * 109.47510 * 300.00085 * 3 2 1 6 6 C 1.53004 * 109.46896 * 179.97438 * 3 2 1 7 7 N 1.46897 * 109.47085 * 65.00512 * 6 3 2 8 8 C 1.47446 * 110.99737 * 290.12313 * 7 6 3 9 9 C 1.54318 * 107.23303 * 236.74038 * 8 7 6 10 10 C 1.55138 * 103.01792 * 337.71992 * 9 8 7 11 11 H 1.09005 * 111.02121 * 277.54485 * 10 9 8 12 12 C 1.50702 * 110.99045 * 153.74778 * 10 9 8 13 13 H 1.07998 * 119.99553 * 247.73405 * 12 10 9 14 14 C 1.37873 * 120.00420 * 67.72623 * 12 10 9 15 15 N 1.31513 * 120.00036 * 0.02562 * 14 12 10 16 16 Si 1.86797 * 120.00141 * 180.02562 * 14 12 10 17 17 H 1.48497 * 109.47414 * 59.99666 * 16 14 12 18 18 H 1.48500 * 109.47479 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.46815 * 299.99675 * 16 14 12 20 20 C 1.47840 * 110.99988 * 169.28137 * 7 6 3 21 21 H 1.09004 * 109.47210 * 59.99833 * 1 2 3 22 22 H 1.09003 * 109.47297 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.47705 * 300.00090 * 1 2 3 24 24 H 1.08998 * 109.47153 * 179.97438 * 4 3 2 25 25 H 1.08999 * 109.46922 * 299.99945 * 4 3 2 26 26 H 1.08999 * 109.46769 * 59.99332 * 4 3 2 27 27 H 1.09005 * 109.46695 * 300.00232 * 5 3 2 28 28 H 1.08999 * 109.47142 * 59.99707 * 5 3 2 29 29 H 1.09000 * 109.47312 * 180.02562 * 5 3 2 30 30 H 1.08995 * 109.47079 * 305.00217 * 6 3 2 31 31 H 1.09000 * 109.46756 * 185.00092 * 6 3 2 32 32 H 1.08996 * 109.88895 * 356.15286 * 8 7 6 33 33 H 1.09001 * 109.88694 * 117.33682 * 8 7 6 34 34 H 1.09003 * 110.70170 * 96.09788 * 9 8 7 35 35 H 1.09002 * 110.70518 * 219.33180 * 9 8 7 36 36 H 0.97001 * 120.00246 * 180.02562 * 15 14 12 37 37 H 1.08998 * 110.37675 * 265.18757 * 20 7 6 38 38 H 1.08996 * 110.37806 * 27.53589 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.5587 2.0648 1.2493 5 6 1.5587 2.0648 -1.2492 6 6 3.5354 1.1846 0.0006 7 7 3.9778 0.5623 -1.2543 8 6 3.5939 -0.8604 -1.3026 9 6 4.8864 -1.6757 -1.5179 10 6 5.8533 -0.6382 -2.1466 11 1 5.6832 -0.5450 -3.2192 12 6 7.2891 -0.9952 -1.8596 13 1 7.8815 -0.3691 -1.2090 14 6 7.8463 -2.1212 -2.4276 15 7 7.1250 -2.8835 -3.2202 16 14 9.6256 -2.5641 -2.0713 17 1 9.8008 -2.7744 -0.6118 18 1 9.9807 -3.8098 -2.7975 19 1 10.5103 -1.4598 -2.5220 20 6 5.4453 0.6593 -1.4052 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 2.0024 3.0603 1.2495 25 1 0.4721 2.1508 1.2493 26 1 1.8802 1.5237 2.1392 27 1 1.8804 1.5238 -2.1392 28 1 0.4722 2.1508 -1.2492 29 1 2.0025 3.0604 -1.2494 30 1 3.8507 0.5685 0.8426 31 1 3.9784 2.1765 0.0902 32 1 3.1249 -1.1501 -0.3623 33 1 2.9058 -1.0309 -2.1306 34 1 5.2759 -2.0386 -0.5667 35 1 4.7099 -2.5037 -2.2044 36 1 7.5168 -3.6759 -3.6196 37 1 5.7088 1.5345 -1.9992 38 1 5.9252 0.7046 -0.4277 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397628814.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:19 Heat of formation + Delta-G solvation = -67.205976 kcal Electronic energy + Delta-G solvation = -16786.332408 eV Core-core repulsion = 14241.848931 eV Total energy + Delta-G solvation = -2544.483476 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.52652 -38.79675 -35.23374 -33.93822 -31.48952 -29.90956 -28.25500 -28.04445 -26.72381 -25.28741 -21.77066 -21.43634 -20.54816 -18.52771 -17.38607 -16.83991 -16.43364 -16.24583 -16.08769 -15.56954 -14.59930 -14.34248 -14.21332 -13.89847 -13.58591 -13.42019 -13.14940 -12.97373 -12.76028 -12.72149 -12.62027 -12.26890 -12.23246 -12.10452 -12.03641 -11.47067 -11.19036 -11.01026 -10.89375 -10.49056 -10.34925 -9.09219 -8.13668 -6.24517 1.41199 1.43163 1.50822 2.42446 2.94384 3.16972 3.22687 3.86955 4.10041 4.13291 4.26366 4.41584 4.50659 4.59318 4.62612 4.64503 4.73140 4.74127 4.79359 4.83794 4.94382 4.97787 5.03630 5.06100 5.20342 5.25207 5.32724 5.38216 5.56173 5.59447 5.79394 5.91845 6.11332 6.35944 6.38419 6.49599 6.85629 7.43244 8.96075 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.053666 B = 0.006100 C = 0.005857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 521.624455 B = 4589.258379 C = 4779.167802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.399 6.399 3 C 0.113 3.887 4 C -0.170 4.170 5 C -0.159 4.159 6 C 0.062 3.938 7 N -0.527 5.527 8 C 0.067 3.933 9 C -0.114 4.114 10 C 0.039 3.961 11 H 0.004 0.996 12 C -0.534 4.534 13 H 0.056 0.944 14 C 0.012 3.988 15 N -0.921 5.921 16 Si 0.958 3.042 17 H -0.271 1.271 18 H -0.284 1.284 19 H -0.268 1.268 20 C 0.058 3.942 21 H 0.047 0.953 22 H 0.085 0.915 23 H 0.055 0.945 24 H 0.080 0.920 25 H 0.074 0.926 26 H 0.057 0.943 27 H 0.052 0.948 28 H 0.065 0.935 29 H 0.070 0.930 30 H 0.026 0.974 31 H 0.095 0.905 32 H 0.064 0.936 33 H 0.054 0.946 34 H 0.030 0.970 35 H 0.040 0.960 36 H 0.261 0.739 37 H 0.068 0.932 38 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.303 9.037 7.770 17.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.319 6.319 3 C 0.074 3.926 4 C -0.227 4.227 5 C -0.216 4.216 6 C -0.066 4.066 7 N -0.251 5.251 8 C -0.061 4.061 9 C -0.153 4.153 10 C 0.020 3.980 11 H 0.023 0.977 12 C -0.572 4.572 13 H 0.074 0.926 14 C -0.187 4.187 15 N -0.560 5.560 16 Si 0.783 3.217 17 H -0.196 1.196 18 H -0.210 1.210 19 H -0.193 1.193 20 C -0.069 4.069 21 H 0.066 0.934 22 H 0.103 0.897 23 H 0.074 0.926 24 H 0.099 0.901 25 H 0.093 0.907 26 H 0.077 0.923 27 H 0.071 0.929 28 H 0.083 0.917 29 H 0.089 0.911 30 H 0.044 0.956 31 H 0.113 0.887 32 H 0.082 0.918 33 H 0.072 0.928 34 H 0.049 0.951 35 H 0.058 0.942 36 H 0.070 0.930 37 H 0.086 0.914 38 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -12.439 8.994 7.261 16.981 hybrid contribution 1.216 -0.920 0.490 1.602 sum -11.223 8.074 7.751 15.850 Atomic orbital electron populations 1.22893 0.80893 1.03005 1.00748 1.88040 1.20573 1.28110 1.95196 1.21563 0.91977 0.83409 0.95666 1.22333 1.02617 1.01077 0.96718 1.22166 1.00955 1.00586 0.97888 1.22367 0.94002 0.99950 0.90292 1.63553 1.12501 1.15102 1.33928 1.22646 0.95707 0.87120 1.00584 1.22569 0.95573 0.98830 0.98371 1.19673 0.93632 0.90806 0.93854 0.97742 1.21385 0.97296 1.09477 1.29057 0.92595 1.25811 1.01990 0.96253 0.94662 1.70099 1.38056 1.15633 1.32191 0.85613 0.80084 0.77592 0.78384 1.19624 1.20971 1.19305 1.22941 0.86586 0.98909 0.98485 0.93431 0.89664 0.92637 0.90142 0.90671 0.92349 0.92866 0.91657 0.91115 0.95556 0.88660 0.91816 0.92754 0.95101 0.94159 0.93011 0.91385 0.94811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.42 10.21 113.37 1.16 1.58 16 2 O -0.40 -11.44 7.44 -148.98 -1.11 -12.55 16 3 C 0.11 2.90 0.86 -10.79 -0.01 2.89 16 4 C -0.17 -3.21 8.25 71.98 0.59 -2.61 16 5 C -0.16 -3.81 8.04 71.98 0.58 -3.23 16 6 C 0.06 1.93 3.96 86.31 0.34 2.27 16 7 N -0.53 -20.32 4.18 -885.57 -3.70 -24.02 16 8 C 0.07 2.81 5.69 86.65 0.49 3.30 16 9 C -0.11 -5.77 5.89 31.77 0.19 -5.58 16 10 C 0.04 2.10 2.84 -10.16 -0.03 2.07 16 11 H 0.00 0.26 8.14 -2.38 -0.02 0.24 16 12 C -0.53 -30.37 8.49 25.60 0.22 -30.16 16 13 H 0.06 3.08 7.77 -2.91 -0.02 3.06 16 14 C 0.01 0.67 5.37 84.65 0.45 1.13 16 15 N -0.92 -55.41 12.61 21.45 0.27 -55.14 16 16 Si 0.96 44.48 29.54 68.60 2.03 46.51 16 17 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 18 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 19 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 20 C 0.06 2.53 6.12 86.77 0.53 3.06 16 21 H 0.05 0.91 6.42 -2.39 -0.02 0.89 16 22 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 23 H 0.06 0.92 6.42 -2.39 -0.02 0.91 16 24 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 25 H 0.07 1.18 6.54 -2.39 -0.02 1.16 16 26 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 27 H 0.05 1.59 7.48 -2.38 -0.02 1.57 16 28 H 0.06 1.29 6.54 -2.39 -0.02 1.28 16 29 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.03 0.88 7.96 -2.39 -0.02 0.86 16 31 H 0.10 2.60 8.07 -2.39 -0.02 2.58 16 32 H 0.06 2.57 5.78 -2.39 -0.01 2.56 16 33 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 34 H 0.03 1.59 8.03 -2.39 -0.02 1.57 16 35 H 0.04 2.20 7.83 -2.39 -0.02 2.18 16 36 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 37 H 0.07 2.82 8.14 -2.39 -0.02 2.80 16 38 H 0.03 1.45 7.68 -2.39 -0.02 1.44 16 Total: -1.00 -63.47 292.65 3.01 -60.47 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: 1.00 Total: 10.01 kcal Atomic # 6 Polarization: -29.80 SS G_CDS: 4.52 Total: -25.28 kcal Atomic # 7 Polarization: -75.73 SS G_CDS: -3.43 Total: -79.16 kcal Atomic # 8 Polarization: -11.44 SS G_CDS: -1.11 Total: -12.55 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.51 kcal Total: -63.47 3.01 -60.47 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397628814.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.739 kcal (2) G-P(sol) polarization free energy of solvation -63.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds