Wall clock time and date at job start Mon Mar 30 2020 03:07:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53005 * 109.47283 * 2 1 4 4 C 1.52994 * 109.47149 * 304.99968 * 3 2 1 5 5 O 1.42902 * 109.46848 * 65.00380 * 3 2 1 6 6 C 1.52999 * 109.46957 * 184.99925 * 3 2 1 7 7 N 1.46898 * 109.47188 * 301.69859 * 6 3 2 8 8 C 1.48535 * 111.00339 * 278.05950 * 7 6 3 9 9 C 1.54936 * 103.22892 * 200.27848 * 8 7 6 10 10 C 1.54600 * 102.92136 * 37.41931 * 9 8 7 11 11 H 1.08995 * 110.39491 * 96.99666 * 10 9 8 12 12 C 1.50695 * 110.30798 * 219.12891 * 10 9 8 13 13 H 1.08003 * 120.00484 * 115.43531 * 12 10 9 14 14 C 1.37888 * 119.99807 * 295.70973 * 12 10 9 15 15 N 1.31514 * 119.99593 * 0.02562 * 14 12 10 16 16 Si 1.86791 * 120.00182 * 179.97438 * 14 12 10 17 17 H 1.48504 * 109.47184 * 90.00063 * 16 14 12 18 18 H 1.48497 * 109.47553 * 209.99951 * 16 14 12 19 19 H 1.48506 * 109.47358 * 330.00485 * 16 14 12 20 20 C 1.47904 * 110.99817 * 160.66406 * 7 6 3 21 21 H 1.09001 * 109.47528 * 59.99529 * 1 2 3 22 22 H 1.09002 * 109.47650 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47393 * 300.00011 * 1 2 3 24 24 H 1.09002 * 109.47393 * 239.99989 * 2 1 3 25 25 H 1.09000 * 109.47013 * 120.00383 * 2 1 3 26 26 H 1.08998 * 109.47134 * 300.13461 * 4 3 2 27 27 H 1.09005 * 109.47177 * 60.13366 * 4 3 2 28 28 H 1.09001 * 109.46805 * 180.13155 * 4 3 2 29 29 H 0.96703 * 114.00233 * 47.94720 * 5 3 2 30 30 H 1.08999 * 109.47082 * 181.70071 * 6 3 2 31 31 H 1.08996 * 109.47126 * 61.70144 * 6 3 2 32 32 H 1.08997 * 110.66444 * 318.71645 * 8 7 6 33 33 H 1.09001 * 110.66516 * 81.67831 * 8 7 6 34 34 H 1.08992 * 110.72456 * 279.05754 * 9 8 7 35 35 H 1.09003 * 110.72387 * 155.77039 * 9 8 7 36 36 H 0.97002 * 119.99951 * 180.02562 * 15 14 12 37 37 H 1.08997 * 109.91712 * 26.49454 * 20 7 6 38 38 H 1.08999 * 110.08474 * 265.29084 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4300 2.1992 -1.1816 5 8 1.6620 2.0814 1.2211 6 6 3.5648 1.4443 -0.1257 7 7 4.1487 0.6832 0.9868 8 6 4.2429 1.5182 2.2116 9 6 5.3109 0.7836 3.0603 10 6 6.3226 0.2972 1.9972 11 1 7.1589 0.9922 1.9227 12 6 6.8196 -1.0832 2.3412 13 1 6.5971 -1.9153 1.6897 14 6 7.5538 -1.2849 3.4908 15 7 7.8198 -0.2727 4.2872 16 14 8.1693 -2.9961 3.9177 17 1 9.5132 -3.2021 3.3202 18 1 8.2569 -3.1369 5.3934 19 1 7.2274 -4.0098 3.3787 20 6 5.5333 0.2670 0.6751 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8932 -0.5139 0.8900 26 1 1.7163 1.7104 -2.1128 27 1 0.3437 2.1999 -1.0908 28 1 1.7952 3.2262 -1.1829 29 1 1.8539 1.5608 2.0132 30 1 3.9307 2.4706 -0.0953 31 1 3.8519 0.9840 -1.0711 32 1 4.5744 2.5268 1.9650 33 1 3.2860 1.5458 2.7329 34 1 4.8697 -0.0617 3.5881 35 1 5.7871 1.4707 3.7599 36 1 8.3366 -0.4145 5.0958 37 1 5.9778 0.9606 -0.0385 38 1 5.5372 -0.7422 0.2634 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397660768.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:48 Heat of formation + Delta-G solvation = -79.033816 kcal Electronic energy + Delta-G solvation = -16751.800443 eV Core-core repulsion = 14206.804073 eV Total energy + Delta-G solvation = -2544.996370 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.49011 -38.43206 -34.97906 -34.14874 -32.32096 -30.40064 -29.86578 -27.25701 -25.80278 -24.07490 -21.92963 -21.28377 -20.93281 -18.59954 -17.55573 -16.94068 -16.42786 -16.37535 -15.48501 -15.15426 -14.88120 -14.33129 -14.22764 -13.76086 -13.53206 -13.22332 -13.06953 -12.97194 -12.74871 -12.71450 -12.53507 -12.49746 -12.23691 -11.92439 -11.70116 -11.56251 -11.35266 -11.09766 -10.83960 -10.64688 -10.48402 -9.24337 -8.12907 -6.21554 1.41571 1.42585 1.52924 2.43866 3.11313 3.20037 3.36596 3.94317 4.01524 4.06186 4.20400 4.29410 4.47385 4.48595 4.60189 4.65519 4.75492 4.78084 4.82921 4.87182 5.02822 5.07580 5.11722 5.16505 5.23522 5.29862 5.35809 5.46855 5.55180 5.59396 5.71855 5.84941 6.13444 6.25980 6.37906 6.84066 6.87224 7.45283 8.96815 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.043472 B = 0.006340 C = 0.006091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.931792 B = 4415.474250 C = 4596.155622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.137 4.137 3 C 0.140 3.860 4 C -0.138 4.138 5 O -0.574 6.574 6 C 0.020 3.980 7 N -0.513 5.513 8 C 0.045 3.955 9 C -0.085 4.085 10 C 0.030 3.970 11 H -0.004 1.004 12 C -0.523 4.523 13 H 0.054 0.946 14 C 0.011 3.989 15 N -0.922 5.922 16 Si 0.955 3.045 17 H -0.276 1.276 18 H -0.285 1.285 19 H -0.268 1.268 20 C 0.056 3.944 21 H 0.065 0.935 22 H 0.056 0.944 23 H 0.050 0.950 24 H 0.069 0.931 25 H 0.060 0.940 26 H 0.083 0.917 27 H 0.074 0.926 28 H 0.055 0.945 29 H 0.379 0.621 30 H 0.033 0.967 31 H 0.083 0.917 32 H 0.033 0.967 33 H 0.089 0.911 34 H 0.041 0.959 35 H 0.036 0.964 36 H 0.260 0.740 37 H 0.028 0.972 38 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.479 2.532 -8.820 15.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.175 4.175 3 C 0.099 3.901 4 C -0.196 4.196 5 O -0.384 6.384 6 C -0.108 4.108 7 N -0.237 5.237 8 C -0.083 4.083 9 C -0.124 4.124 10 C 0.011 3.989 11 H 0.014 0.986 12 C -0.561 4.561 13 H 0.073 0.927 14 C -0.188 4.188 15 N -0.561 5.561 16 Si 0.781 3.219 17 H -0.202 1.202 18 H -0.210 1.210 19 H -0.192 1.192 20 C -0.071 4.071 21 H 0.084 0.916 22 H 0.075 0.925 23 H 0.069 0.931 24 H 0.088 0.912 25 H 0.079 0.921 26 H 0.102 0.898 27 H 0.093 0.907 28 H 0.074 0.926 29 H 0.230 0.770 30 H 0.052 0.948 31 H 0.101 0.899 32 H 0.051 0.949 33 H 0.107 0.893 34 H 0.059 0.941 35 H 0.055 0.945 36 H 0.069 0.931 37 H 0.047 0.953 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -12.920 2.581 -9.001 15.957 hybrid contribution 1.633 -0.457 0.824 1.886 sum -11.287 2.124 -8.177 14.099 Atomic orbital electron populations 1.21777 0.94741 1.01621 1.02203 1.22012 0.96623 0.95896 1.02986 1.21248 0.90719 0.92549 0.85573 1.21816 1.01850 1.00076 0.95819 1.86463 1.86087 1.49426 1.16419 1.23078 0.96601 0.96173 0.94984 1.64698 1.19026 1.36182 1.03790 1.23363 0.99106 0.94017 0.91803 1.22192 0.95308 0.97583 0.97292 1.19476 0.92744 0.95443 0.91260 0.98573 1.21506 1.33115 0.94351 1.07168 0.92730 1.25763 0.96303 1.00371 0.96346 1.70092 1.40240 1.32158 1.13634 0.85602 0.78723 0.80480 0.77140 1.20168 1.21032 1.19211 1.22830 0.87769 0.99232 0.97303 0.91573 0.92509 0.93091 0.91222 0.92111 0.89789 0.90703 0.92637 0.77004 0.94848 0.89903 0.94872 0.89265 0.94052 0.94487 0.93112 0.95346 0.91616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.91 9.32 71.98 0.67 -2.24 16 2 C -0.14 -3.29 4.84 30.59 0.15 -3.14 16 3 C 0.14 3.50 0.89 -10.79 -0.01 3.49 16 4 C -0.14 -2.78 8.35 71.98 0.60 -2.18 16 5 O -0.57 -15.86 11.84 -148.98 -1.76 -17.63 16 6 C 0.02 0.60 4.09 86.30 0.35 0.95 16 7 N -0.51 -18.38 4.42 -883.01 -3.90 -22.28 16 8 C 0.04 1.66 5.62 86.65 0.49 2.14 16 9 C -0.08 -4.02 5.75 31.80 0.18 -3.84 16 10 C 0.03 1.52 2.87 -10.66 -0.03 1.49 16 11 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 12 C -0.52 -29.04 8.38 25.60 0.21 -28.82 16 13 H 0.05 2.98 7.34 -2.91 -0.02 2.96 16 14 C 0.01 0.60 5.34 84.66 0.45 1.05 16 15 N -0.92 -54.10 12.62 21.45 0.27 -53.83 16 16 Si 0.95 43.97 29.54 68.60 2.03 46.00 16 17 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 18 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 19 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 20 C 0.06 2.35 6.24 86.45 0.54 2.89 16 21 H 0.07 1.14 6.35 -2.39 -0.02 1.12 16 22 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 23 H 0.05 1.07 7.82 -2.39 -0.02 1.05 16 24 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 25 H 0.06 1.72 7.71 -2.39 -0.02 1.70 16 26 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 27 H 0.07 1.38 6.35 -2.38 -0.02 1.37 16 28 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.38 10.06 6.06 -74.06 -0.45 9.61 16 30 H 0.03 1.02 7.62 -2.39 -0.02 1.01 16 31 H 0.08 2.24 7.95 -2.39 -0.02 2.22 16 32 H 0.03 1.23 7.69 -2.39 -0.02 1.22 16 33 H 0.09 2.88 5.58 -2.39 -0.01 2.87 16 34 H 0.04 2.08 7.86 -2.39 -0.02 2.07 16 35 H 0.04 1.86 8.12 -2.39 -0.02 1.84 16 36 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16 37 H 0.03 1.11 7.77 -2.39 -0.02 1.09 16 38 H 0.07 2.80 7.39 -2.39 -0.02 2.78 16 Total: -1.00 -60.34 292.06 0.81 -59.53 By element: Atomic # 1 Polarization: 15.84 SS G_CDS: 0.57 Total: 16.41 kcal Atomic # 6 Polarization: -31.81 SS G_CDS: 3.61 Total: -28.20 kcal Atomic # 7 Polarization: -72.47 SS G_CDS: -3.63 Total: -76.11 kcal Atomic # 8 Polarization: -15.86 SS G_CDS: -1.76 Total: -17.63 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Total: -60.34 0.81 -59.53 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397660768.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.509 kcal (2) G-P(sol) polarization free energy of solvation -60.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds