Wall clock time and date at job start Mon Mar 30 2020 03:31:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.46710 * 2 1 4 4 C 1.52999 * 109.47557 * 120.00099 * 2 1 3 5 5 H 1.08993 * 109.47624 * 185.00145 * 4 2 1 6 6 O 1.42899 * 109.46732 * 305.00626 * 4 2 1 7 7 C 1.53007 * 109.46933 * 64.99991 * 4 2 1 8 8 N 1.46898 * 109.46660 * 180.02562 * 7 4 2 9 9 C 1.48533 * 111.00229 * 287.39570 * 8 7 4 10 10 C 1.54938 * 103.22943 * 200.28355 * 9 8 7 11 11 C 1.54604 * 102.92068 * 37.41397 * 10 9 8 12 12 H 1.08999 * 110.38990 * 96.99973 * 11 10 9 13 13 C 1.50695 * 110.30967 * 219.12952 * 11 10 9 14 14 H 1.07995 * 120.00496 * 115.71638 * 13 11 10 15 15 C 1.37880 * 119.99572 * 295.71571 * 13 11 10 16 16 N 1.31511 * 120.00327 * 0.02562 * 15 13 11 17 17 Si 1.86798 * 119.99951 * 180.02562 * 15 13 11 18 18 H 1.48506 * 109.47297 * 59.99744 * 17 15 13 19 19 H 1.48503 * 109.47261 * 299.99924 * 17 15 13 20 20 H 1.48500 * 109.47454 * 179.97438 * 17 15 13 21 21 C 1.47905 * 110.99481 * 170.00154 * 8 7 4 22 22 H 1.09005 * 109.47609 * 60.00011 * 1 2 3 23 23 H 1.09006 * 109.47055 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47197 * 299.99556 * 1 2 3 25 25 H 1.08997 * 109.47197 * 240.00444 * 2 1 3 26 26 H 1.09003 * 109.47193 * 179.97438 * 3 2 1 27 27 H 1.08993 * 109.47465 * 300.00096 * 3 2 1 28 28 H 1.08997 * 109.46928 * 60.00279 * 3 2 1 29 29 H 0.96696 * 114.00767 * 59.99668 * 6 4 2 30 30 H 1.08998 * 109.47017 * 60.00344 * 7 4 2 31 31 H 1.08998 * 109.46745 * 300.00145 * 7 4 2 32 32 H 1.09003 * 110.66490 * 318.72256 * 9 8 7 33 33 H 1.09002 * 110.66494 * 81.67854 * 9 8 7 34 34 H 1.08996 * 110.72459 * 279.05663 * 10 9 8 35 35 H 1.09001 * 110.72436 * 155.76940 * 10 9 8 36 36 H 0.97006 * 119.99995 * 359.97438 * 16 15 13 37 37 H 1.09004 * 109.91703 * 26.49482 * 21 8 7 38 38 H 1.09000 * 109.91883 * 265.19700 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 1 3.1263 -0.6443 1.2951 6 8 1.4702 -0.1189 2.4130 7 6 1.6353 -2.1955 1.1879 8 7 2.1246 -2.8878 2.3875 9 6 3.5979 -3.0686 2.3342 10 6 3.8505 -4.2202 3.3395 11 6 2.6338 -5.1475 3.1157 12 1 2.8950 -5.9597 2.4375 13 6 2.1489 -5.7007 4.4309 14 1 1.1649 -5.4445 4.7947 15 6 2.9617 -6.5342 5.1697 16 7 4.1601 -6.8459 4.7270 17 14 2.3605 -7.2206 6.7997 18 1 1.1317 -8.0240 6.5755 19 1 2.0573 -6.1009 7.7268 20 1 3.4140 -8.0832 7.3924 21 6 1.5545 -4.2492 2.4833 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5137 0.8900 25 1 1.8933 -0.5137 -0.8900 26 1 3.1299 1.4426 0.0005 27 1 1.6765 1.9564 -0.8899 28 1 1.6765 1.9563 0.8900 29 1 0.5041 -0.1509 2.4395 30 1 2.0700 -2.6550 0.3001 31 1 0.5490 -2.2724 1.1420 32 1 3.9141 -3.3567 1.3317 33 1 4.1087 -2.1592 2.6508 34 1 3.8652 -3.8433 4.3621 35 1 4.7796 -4.7398 3.1053 36 1 4.4722 -6.4897 3.8804 37 1 1.3018 -4.6167 1.4887 38 1 0.6658 -4.2362 3.1142 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397669751.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:14 Heat of formation + Delta-G solvation = -89.898205 kcal Electronic energy + Delta-G solvation = -16495.750527 eV Core-core repulsion = 13950.283042 eV Total energy + Delta-G solvation = -2545.467485 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.39002 -38.79543 -35.38481 -34.62495 -32.33792 -30.09864 -28.58452 -28.08220 -25.97748 -24.12393 -21.78395 -21.62735 -20.87143 -18.98004 -17.68642 -16.84878 -16.59346 -16.35700 -15.67536 -15.49912 -15.09692 -14.66543 -14.18894 -13.91235 -13.79074 -13.19080 -13.16219 -12.90875 -12.81790 -12.54114 -12.48307 -12.23791 -12.04753 -11.94323 -11.78984 -11.73253 -11.58796 -11.35494 -10.68118 -10.51967 -10.45454 -9.28317 -8.57597 -6.29271 1.53910 1.61996 1.80997 2.59160 2.96052 3.22060 3.64396 3.70136 3.91053 3.99171 4.06998 4.15545 4.23920 4.34010 4.38760 4.43920 4.60809 4.69104 4.74902 4.79717 4.82995 4.93071 4.99306 5.02624 5.06773 5.14965 5.18804 5.34269 5.40193 5.44127 5.47989 6.00592 6.11267 6.19961 6.25255 6.68064 6.92554 7.49533 8.81323 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.054678 B = 0.005551 C = 0.005415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 511.969332 B = 5042.789382 C = 5169.996076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.122 4.122 3 C -0.140 4.140 4 C 0.124 3.876 5 H 0.082 0.918 6 O -0.563 6.563 7 C 0.013 3.987 8 N -0.514 5.514 9 C 0.046 3.954 10 C -0.102 4.102 11 C 0.013 3.987 12 H -0.004 1.004 13 C -0.601 4.601 14 H 0.044 0.956 15 C -0.031 4.031 16 N -0.938 5.938 17 Si 1.113 2.887 18 H -0.270 1.270 19 H -0.274 1.274 20 H -0.284 1.284 21 C 0.063 3.937 22 H 0.069 0.931 23 H 0.056 0.944 24 H 0.062 0.938 25 H 0.081 0.919 26 H 0.049 0.951 27 H 0.067 0.933 28 H 0.053 0.947 29 H 0.378 0.622 30 H 0.043 0.957 31 H 0.085 0.915 32 H 0.045 0.955 33 H 0.079 0.921 34 H 0.038 0.962 35 H 0.041 0.959 36 H 0.260 0.740 37 H 0.033 0.967 38 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.266 13.653 -10.439 18.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.142 4.142 3 C -0.197 4.197 4 C 0.064 3.936 5 H 0.100 0.900 6 O -0.370 6.370 7 C -0.116 4.116 8 N -0.239 5.239 9 C -0.081 4.081 10 C -0.141 4.141 11 C -0.006 4.006 12 H 0.014 0.986 13 C -0.639 4.639 14 H 0.063 0.937 15 C -0.229 4.229 16 N -0.576 5.576 17 Si 0.935 3.065 18 H -0.196 1.196 19 H -0.200 1.200 20 H -0.210 1.210 21 C -0.065 4.065 22 H 0.088 0.912 23 H 0.075 0.925 24 H 0.081 0.919 25 H 0.100 0.900 26 H 0.068 0.932 27 H 0.086 0.914 28 H 0.073 0.927 29 H 0.227 0.773 30 H 0.061 0.939 31 H 0.103 0.897 32 H 0.063 0.937 33 H 0.098 0.902 34 H 0.057 0.943 35 H 0.060 0.940 36 H 0.071 0.929 37 H 0.052 0.948 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -5.387 13.121 -8.605 16.590 hybrid contribution -0.467 0.014 -2.158 2.208 sum -5.854 13.134 -10.763 17.961 Atomic orbital electron populations 1.21897 0.94050 1.02173 1.02906 1.21736 0.97383 0.97370 0.97670 1.21729 1.00712 0.95111 1.02146 1.21841 0.97635 0.88842 0.85258 0.90032 1.86562 1.25888 1.80878 1.43641 1.23169 1.01321 0.96147 0.90917 1.64659 1.05089 1.16454 1.37649 1.23171 0.89355 0.98147 0.97471 1.22447 0.97932 0.95937 0.97813 1.19664 0.92808 0.92737 0.95363 0.98625 1.22347 1.03197 1.31936 1.06410 0.93740 1.27189 0.94031 0.95100 1.06624 1.70907 1.19016 1.45347 1.22348 0.82976 0.75500 0.76318 0.71674 1.19564 1.19999 1.20992 1.22712 0.98150 0.87971 0.97671 0.91160 0.92490 0.91925 0.90017 0.93152 0.91446 0.92741 0.77329 0.93863 0.89694 0.93718 0.90236 0.94303 0.94033 0.92936 0.94848 0.92056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.31 8.52 71.98 0.61 -1.70 16 2 C -0.12 -2.19 2.75 -10.79 -0.03 -2.22 16 3 C -0.14 -2.35 9.09 71.98 0.65 -1.70 16 4 C 0.12 3.04 2.75 30.60 0.08 3.12 16 5 H 0.08 2.19 7.37 -2.39 -0.02 2.17 16 6 O -0.56 -15.45 12.64 -148.98 -1.88 -17.33 16 7 C 0.01 0.36 4.12 86.31 0.36 0.72 16 8 N -0.51 -19.47 5.11 -882.98 -4.51 -23.98 16 9 C 0.05 1.78 5.91 86.65 0.51 2.30 16 10 C -0.10 -4.97 5.57 31.80 0.18 -4.80 16 11 C 0.01 0.69 2.54 -10.66 -0.03 0.66 16 12 H 0.00 -0.24 7.95 -2.39 -0.02 -0.26 16 13 C -0.60 -34.70 8.38 25.60 0.21 -34.49 16 14 H 0.04 2.56 7.34 -2.91 -0.02 2.53 16 15 C -0.03 -1.83 5.34 84.66 0.45 -1.38 16 16 N -0.94 -57.93 13.45 21.45 0.29 -57.65 16 17 Si 1.11 51.37 29.90 68.60 2.05 53.42 16 18 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 19 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 20 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 21 C 0.06 2.70 6.31 86.45 0.55 3.25 16 22 H 0.07 0.89 8.14 -2.38 -0.02 0.87 16 23 H 0.06 0.89 6.57 -2.38 -0.02 0.87 16 24 H 0.06 0.90 6.72 -2.39 -0.02 0.89 16 25 H 0.08 1.36 8.14 -2.39 -0.02 1.35 16 26 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.05 1.00 7.82 -2.39 -0.02 0.99 16 29 H 0.38 8.22 7.19 -74.06 -0.53 7.69 16 30 H 0.04 1.16 7.83 -2.39 -0.02 1.14 16 31 H 0.08 2.18 6.50 -2.39 -0.02 2.16 16 32 H 0.04 1.57 7.81 -2.39 -0.02 1.56 16 33 H 0.08 2.88 7.80 -2.39 -0.02 2.86 16 34 H 0.04 2.07 7.86 -2.39 -0.02 2.06 16 35 H 0.04 2.04 7.10 -2.39 -0.02 2.02 16 36 H 0.26 16.07 5.65 -92.70 -0.52 15.55 16 37 H 0.03 1.31 7.77 -2.39 -0.02 1.29 16 38 H 0.06 2.76 7.39 -2.39 -0.02 2.74 16 Total: -1.00 -66.30 292.94 0.23 -66.07 By element: Atomic # 1 Polarization: 14.97 SS G_CDS: 0.73 Total: 15.70 kcal Atomic # 6 Polarization: -39.78 SS G_CDS: 3.55 Total: -36.23 kcal Atomic # 7 Polarization: -77.40 SS G_CDS: -4.22 Total: -81.62 kcal Atomic # 8 Polarization: -15.45 SS G_CDS: -1.88 Total: -17.33 kcal Atomic # 14 Polarization: 51.37 SS G_CDS: 2.05 Total: 53.42 kcal Total: -66.30 0.23 -66.07 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397669751.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.832 kcal (2) G-P(sol) polarization free energy of solvation -66.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds