Wall clock time and date at job start Mon Mar 30 2020 03:07:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47152 * 2 1 4 4 O 1.42905 * 109.46775 * 240.00365 * 2 1 3 5 5 C 1.52993 * 109.47368 * 120.00329 * 2 1 3 6 6 C 1.52995 * 109.47442 * 185.00031 * 5 2 1 7 7 N 1.46900 * 109.47464 * 175.68103 * 6 5 2 8 8 C 1.47904 * 111.00066 * 175.90719 * 7 6 5 9 9 C 1.53987 * 107.05820 * 214.15721 * 8 7 6 10 10 C 1.54600 * 105.14057 * 1.22577 * 9 8 7 11 11 H 1.08997 * 110.72795 * 263.59635 * 10 9 8 12 12 C 1.50708 * 110.72135 * 140.49440 * 10 9 8 13 13 H 1.07996 * 119.99580 * 241.45184 * 12 10 9 14 14 C 1.37868 * 120.00155 * 61.45357 * 12 10 9 15 15 N 1.31522 * 120.00310 * 0.02562 * 14 12 10 16 16 Si 1.86797 * 120.00137 * 179.97438 * 14 12 10 17 17 H 1.48505 * 109.46957 * 60.00246 * 16 14 12 18 18 H 1.48503 * 109.47328 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47450 * 300.00292 * 16 14 12 20 20 C 1.48531 * 110.99838 * 58.51375 * 7 6 5 21 21 H 1.08999 * 109.47706 * 59.99869 * 1 2 3 22 22 H 1.09002 * 109.47134 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.46982 * 300.00052 * 1 2 3 24 24 H 1.08997 * 109.47219 * 60.00093 * 3 2 1 25 25 H 1.08998 * 109.47298 * 180.02562 * 3 2 1 26 26 H 1.09011 * 109.46851 * 300.00158 * 3 2 1 27 27 H 0.96698 * 114.00145 * 59.99648 * 4 2 1 28 28 H 1.09008 * 109.46990 * 304.99718 * 5 2 1 29 29 H 1.08999 * 109.47555 * 64.99516 * 5 2 1 30 30 H 1.09001 * 109.46978 * 295.68069 * 6 5 2 31 31 H 1.09002 * 109.47123 * 55.68121 * 6 5 2 32 32 H 1.08994 * 109.91566 * 333.51148 * 8 7 6 33 33 H 1.08996 * 109.91432 * 94.60611 * 8 7 6 34 34 H 1.09000 * 110.31320 * 120.14490 * 9 8 7 35 35 H 1.09005 * 110.31053 * 242.21271 * 9 8 7 36 36 H 0.96995 * 120.00102 * 179.97438 * 15 14 12 37 37 H 1.09001 * 110.67138 * 278.15626 * 20 7 6 38 38 H 1.09003 * 110.66951 * 41.28352 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 -1.1669 5 6 2.0400 -0.7213 1.2491 6 6 3.5648 -0.6133 1.3136 7 7 4.0460 -1.2153 2.5642 8 6 5.5241 -1.2172 2.6173 9 6 5.9476 -2.4947 3.3653 10 6 4.6260 -3.2235 3.7002 11 1 4.3031 -2.9902 4.7148 12 6 4.7774 -4.7121 3.5199 13 1 4.1687 -5.2330 2.7958 14 6 5.6930 -5.4089 4.2795 15 7 6.4340 -4.7747 5.1618 16 14 5.8802 -7.2540 4.0566 17 1 6.2800 -7.5454 2.6564 18 1 6.9220 -7.7617 4.9851 19 1 4.5871 -7.9220 4.3514 20 6 3.6356 -2.6395 2.6617 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.6767 1.9563 0.8900 25 1 3.1300 1.4425 -0.0005 26 1 1.6766 1.9563 -0.8901 27 1 1.7209 -0.2701 -1.9980 28 1 1.6054 -0.2617 2.1369 29 1 1.7517 -1.7715 1.2055 30 1 4.0025 -1.1394 0.4652 31 1 3.8565 0.4364 1.2799 32 1 5.9319 -1.2262 1.6065 33 1 5.8774 -0.3357 3.1522 34 1 6.5720 -3.1184 2.7256 35 1 6.4821 -2.2380 4.2800 36 1 7.0779 -5.2650 5.6965 37 1 2.6096 -2.7206 3.0207 38 1 3.7481 -3.1391 1.6995 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397675797.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:55 Heat of formation + Delta-G solvation = -64.945901 kcal Electronic energy + Delta-G solvation = -16365.907056 eV Core-core repulsion = 13821.521584 eV Total energy + Delta-G solvation = -2544.385472 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.86103 -37.53785 -33.69370 -32.57267 -30.71683 -28.41800 -27.61003 -27.07805 -24.64357 -22.41088 -20.22438 -19.80102 -19.20863 -16.57866 -16.31011 -15.40512 -14.94886 -14.64520 -14.39230 -13.90299 -13.69669 -13.20829 -12.87540 -12.43805 -12.07145 -11.98337 -11.82138 -11.64032 -11.57701 -11.00795 -10.95693 -10.76878 -10.56947 -10.46381 -10.38628 -9.96805 -9.88436 -9.56100 -9.12832 -8.70742 -8.34070 -7.63474 -5.96748 -3.99881 3.35173 3.39518 3.42345 4.21470 4.46067 4.58770 4.80568 4.87783 5.13580 5.36542 5.40517 5.46728 5.57525 5.66824 5.72498 5.83968 5.92902 5.97969 6.05663 6.14156 6.18868 6.30718 6.39535 6.48948 6.58165 6.64913 6.94270 7.22869 7.25827 7.64576 7.69284 7.74156 7.84692 7.95773 8.10201 8.51303 9.02505 9.63972 11.13071 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.042765 B = 0.005713 C = 0.005328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.578065 B = 4900.274674 C = 5254.052865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.125 3.875 3 C -0.180 4.180 4 O -0.557 6.557 5 C -0.102 4.102 6 C 0.050 3.950 7 N -0.525 5.525 8 C 0.034 3.966 9 C -0.101 4.101 10 C 0.052 3.948 11 H 0.035 0.965 12 C -0.515 4.515 13 H 0.054 0.946 14 C 0.063 3.937 15 N -0.889 5.889 16 Si 0.890 3.110 17 H -0.278 1.278 18 H -0.288 1.288 19 H -0.277 1.277 20 C 0.042 3.958 21 H 0.054 0.946 22 H 0.063 0.937 23 H 0.065 0.935 24 H 0.066 0.934 25 H 0.068 0.932 26 H 0.052 0.948 27 H 0.369 0.631 28 H 0.081 0.919 29 H 0.071 0.929 30 H 0.035 0.965 31 H 0.065 0.935 32 H 0.026 0.974 33 H 0.059 0.941 34 H 0.053 0.947 35 H 0.060 0.940 36 H 0.260 0.740 37 H 0.061 0.939 38 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.345 10.875 -9.622 16.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.084 3.916 3 C -0.237 4.237 4 O -0.363 6.363 5 C -0.140 4.140 6 C -0.078 4.078 7 N -0.249 5.249 8 C -0.094 4.094 9 C -0.140 4.140 10 C 0.033 3.967 11 H 0.053 0.947 12 C -0.554 4.554 13 H 0.073 0.927 14 C -0.138 4.138 15 N -0.527 5.527 16 Si 0.718 3.282 17 H -0.204 1.204 18 H -0.213 1.213 19 H -0.203 1.203 20 C -0.085 4.085 21 H 0.073 0.927 22 H 0.082 0.918 23 H 0.085 0.915 24 H 0.085 0.915 25 H 0.087 0.913 26 H 0.071 0.929 27 H 0.216 0.784 28 H 0.099 0.901 29 H 0.090 0.910 30 H 0.053 0.947 31 H 0.084 0.916 32 H 0.045 0.955 33 H 0.078 0.922 34 H 0.071 0.929 35 H 0.078 0.922 36 H 0.070 0.930 37 H 0.079 0.921 38 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -8.141 10.779 -8.601 16.014 hybrid contribution 0.246 -1.026 -1.237 1.626 sum -7.895 9.753 -9.839 15.946 Atomic orbital electron populations 1.22479 0.96005 1.02748 1.02185 1.21257 0.92254 0.91433 0.86623 1.22561 1.02699 0.96377 1.02083 1.86652 1.77129 1.57018 1.15455 1.21571 0.96281 1.01321 0.94784 1.22243 0.94500 0.99420 0.91671 1.64798 1.09695 1.17981 1.32443 1.22945 0.87752 1.00196 0.98478 1.22299 1.00264 0.92696 0.98718 1.19532 0.89493 0.93903 0.93813 0.94706 1.21072 1.20847 0.92330 1.21158 0.92730 1.24959 0.95728 0.98087 0.95063 1.69974 1.23628 1.35632 1.23444 0.86693 0.77753 0.85845 0.77897 1.20355 1.21328 1.20271 1.23347 0.99678 0.86068 0.99439 0.92664 0.91754 0.91549 0.91489 0.91277 0.92868 0.78443 0.90080 0.91033 0.94718 0.91624 0.95549 0.92209 0.92853 0.92154 0.93039 0.92104 0.94805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.70 8.82 37.16 0.33 -1.37 16 2 C 0.13 1.45 1.09 -90.62 -0.10 1.35 16 3 C -0.18 -1.79 8.33 37.16 0.31 -1.48 16 4 O -0.56 -6.95 12.59 -35.23 -0.44 -7.39 16 5 C -0.10 -1.49 4.22 -26.74 -0.11 -1.60 16 6 C 0.05 0.84 4.34 -3.83 -0.02 0.83 16 7 N -0.53 -10.55 5.35 -230.46 -1.23 -11.78 16 8 C 0.03 0.70 6.70 -2.76 -0.02 0.69 16 9 C -0.10 -2.47 5.51 -25.38 -0.14 -2.61 16 10 C 0.05 1.34 2.98 -89.91 -0.27 1.08 16 11 H 0.03 0.99 8.14 -51.93 -0.42 0.56 16 12 C -0.52 -14.52 8.43 -34.44 -0.29 -14.82 16 13 H 0.05 1.52 7.78 -52.49 -0.41 1.11 16 14 C 0.06 1.79 5.33 -17.82 -0.10 1.70 16 15 N -0.89 -25.98 12.44 55.43 0.69 -25.29 16 16 Si 0.89 21.64 29.54 -169.99 -5.02 16.62 16 17 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 18 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 19 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 20 C 0.04 0.93 4.78 -1.90 -0.01 0.92 16 21 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 22 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 23 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.07 0.76 6.25 -51.93 -0.32 0.43 16 26 H 0.05 0.43 8.14 -51.92 -0.42 0.01 16 27 H 0.37 2.97 9.05 45.56 0.41 3.38 16 28 H 0.08 1.14 8.14 -51.92 -0.42 0.72 16 29 H 0.07 1.16 7.14 -51.93 -0.37 0.79 16 30 H 0.03 0.64 7.77 -51.93 -0.40 0.24 16 31 H 0.07 1.01 6.10 -51.93 -0.32 0.69 16 32 H 0.03 0.52 7.67 -51.93 -0.40 0.12 16 33 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.05 1.38 7.84 -51.93 -0.41 0.97 16 35 H 0.06 1.54 8.05 -51.93 -0.42 1.12 16 36 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 37 H 0.06 1.30 7.75 -51.93 -0.40 0.90 16 38 H 0.03 0.78 7.92 -51.93 -0.41 0.37 16 LS Contribution 298.53 15.07 4.50 4.50 Total: -1.00 -30.16 298.53 -7.89 -38.04 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: -5.97 Total: 0.62 kcal Atomic # 6 Polarization: -14.91 SS G_CDS: -0.41 Total: -15.32 kcal Atomic # 7 Polarization: -36.53 SS G_CDS: -0.54 Total: -37.07 kcal Atomic # 8 Polarization: -6.95 SS G_CDS: -0.44 Total: -7.39 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -30.16 -7.89 -38.04 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397675797.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.903 kcal (2) G-P(sol) polarization free energy of solvation -30.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds