Wall clock time and date at job start Mon Mar 30 2020 03:07:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47152 * 2 1 4 4 O 1.42905 * 109.46775 * 240.00365 * 2 1 3 5 5 C 1.52993 * 109.47368 * 120.00329 * 2 1 3 6 6 C 1.52995 * 109.47442 * 185.00031 * 5 2 1 7 7 N 1.46900 * 109.47464 * 175.68103 * 6 5 2 8 8 C 1.47904 * 111.00066 * 175.90719 * 7 6 5 9 9 C 1.53987 * 107.05820 * 214.15721 * 8 7 6 10 10 C 1.54600 * 105.14057 * 1.22577 * 9 8 7 11 11 H 1.08997 * 110.72795 * 263.59635 * 10 9 8 12 12 C 1.50708 * 110.72135 * 140.49440 * 10 9 8 13 13 H 1.07996 * 119.99580 * 241.45184 * 12 10 9 14 14 C 1.37868 * 120.00155 * 61.45357 * 12 10 9 15 15 N 1.31522 * 120.00310 * 0.02562 * 14 12 10 16 16 Si 1.86797 * 120.00137 * 179.97438 * 14 12 10 17 17 H 1.48505 * 109.46957 * 60.00246 * 16 14 12 18 18 H 1.48503 * 109.47328 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47450 * 300.00292 * 16 14 12 20 20 C 1.48531 * 110.99838 * 58.51375 * 7 6 5 21 21 H 1.08999 * 109.47706 * 59.99869 * 1 2 3 22 22 H 1.09002 * 109.47134 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.46982 * 300.00052 * 1 2 3 24 24 H 1.08997 * 109.47219 * 60.00093 * 3 2 1 25 25 H 1.08998 * 109.47298 * 180.02562 * 3 2 1 26 26 H 1.09011 * 109.46851 * 300.00158 * 3 2 1 27 27 H 0.96698 * 114.00145 * 59.99648 * 4 2 1 28 28 H 1.09008 * 109.46990 * 304.99718 * 5 2 1 29 29 H 1.08999 * 109.47555 * 64.99516 * 5 2 1 30 30 H 1.09001 * 109.46978 * 295.68069 * 6 5 2 31 31 H 1.09002 * 109.47123 * 55.68121 * 6 5 2 32 32 H 1.08994 * 109.91566 * 333.51148 * 8 7 6 33 33 H 1.08996 * 109.91432 * 94.60611 * 8 7 6 34 34 H 1.09000 * 110.31320 * 120.14490 * 9 8 7 35 35 H 1.09005 * 110.31053 * 242.21271 * 9 8 7 36 36 H 0.96995 * 120.00102 * 179.97438 * 15 14 12 37 37 H 1.09001 * 110.67138 * 278.15626 * 20 7 6 38 38 H 1.09003 * 110.66951 * 41.28352 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 -1.1669 5 6 2.0400 -0.7213 1.2491 6 6 3.5648 -0.6133 1.3136 7 7 4.0460 -1.2153 2.5642 8 6 5.5241 -1.2172 2.6173 9 6 5.9476 -2.4947 3.3653 10 6 4.6260 -3.2235 3.7002 11 1 4.3031 -2.9902 4.7148 12 6 4.7774 -4.7121 3.5199 13 1 4.1687 -5.2330 2.7958 14 6 5.6930 -5.4089 4.2795 15 7 6.4340 -4.7747 5.1618 16 14 5.8802 -7.2540 4.0566 17 1 6.2800 -7.5454 2.6564 18 1 6.9220 -7.7617 4.9851 19 1 4.5871 -7.9220 4.3514 20 6 3.6356 -2.6395 2.6617 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.6767 1.9563 0.8900 25 1 3.1300 1.4425 -0.0005 26 1 1.6766 1.9563 -0.8901 27 1 1.7209 -0.2701 -1.9980 28 1 1.6054 -0.2617 2.1369 29 1 1.7517 -1.7715 1.2055 30 1 4.0025 -1.1394 0.4652 31 1 3.8565 0.4364 1.2799 32 1 5.9319 -1.2262 1.6065 33 1 5.8774 -0.3357 3.1522 34 1 6.5720 -3.1184 2.7256 35 1 6.4821 -2.2380 4.2800 36 1 7.0779 -5.2650 5.6965 37 1 2.6096 -2.7206 3.0207 38 1 3.7481 -3.1391 1.6995 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397675797.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:55 Heat of formation + Delta-G solvation = -86.758231 kcal Electronic energy + Delta-G solvation = -16366.852910 eV Core-core repulsion = 13821.521584 eV Total energy + Delta-G solvation = -2545.331326 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.15361 -38.92507 -35.39125 -34.04011 -32.25172 -30.21883 -28.79637 -28.15654 -26.61811 -23.86734 -21.61304 -21.53531 -20.75616 -18.41597 -17.45603 -16.91224 -16.64586 -16.19088 -15.81100 -15.20009 -15.01405 -14.50098 -14.28403 -13.99767 -13.49270 -13.36878 -13.10163 -12.98844 -12.65630 -12.62484 -12.59472 -12.44878 -12.19163 -12.17665 -11.70334 -11.56521 -11.34065 -11.10426 -10.83269 -10.79388 -10.50921 -9.29157 -8.14249 -6.25247 1.40750 1.42501 1.50309 2.42038 3.13664 3.19113 3.40705 3.80525 3.96777 4.10090 4.16387 4.28648 4.31929 4.47203 4.60275 4.62045 4.66969 4.75410 4.84354 4.86793 4.93807 4.99372 5.08346 5.13954 5.23100 5.25706 5.27837 5.35144 5.44421 5.59371 5.78916 5.85406 6.01206 6.28539 6.39222 6.83943 6.98285 7.42511 8.95114 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.042765 B = 0.005713 C = 0.005328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.578065 B = 4900.274674 C = 5254.052865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.126 3.874 3 C -0.176 4.176 4 O -0.581 6.581 5 C -0.102 4.102 6 C 0.054 3.946 7 N -0.526 5.526 8 C 0.042 3.958 9 C -0.093 4.093 10 C 0.041 3.959 11 H 0.003 0.997 12 C -0.538 4.538 13 H 0.052 0.948 14 C 0.015 3.985 15 N -0.917 5.917 16 Si 0.957 3.043 17 H -0.272 1.272 18 H -0.282 1.282 19 H -0.270 1.270 20 C 0.059 3.941 21 H 0.077 0.923 22 H 0.051 0.949 23 H 0.073 0.927 24 H 0.073 0.927 25 H 0.057 0.943 26 H 0.075 0.925 27 H 0.388 0.612 28 H 0.087 0.913 29 H 0.049 0.951 30 H 0.019 0.981 31 H 0.087 0.913 32 H 0.038 0.962 33 H 0.080 0.920 34 H 0.031 0.969 35 H 0.040 0.960 36 H 0.262 0.738 37 H 0.067 0.933 38 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.220 11.763 -10.871 18.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.086 3.914 3 C -0.233 4.233 4 O -0.389 6.389 5 C -0.139 4.139 6 C -0.074 4.074 7 N -0.250 5.250 8 C -0.086 4.086 9 C -0.131 4.131 10 C 0.022 3.978 11 H 0.022 0.978 12 C -0.576 4.576 13 H 0.070 0.930 14 C -0.185 4.185 15 N -0.556 5.556 16 Si 0.782 3.218 17 H -0.197 1.197 18 H -0.207 1.207 19 H -0.195 1.195 20 C -0.069 4.069 21 H 0.096 0.904 22 H 0.070 0.930 23 H 0.092 0.908 24 H 0.092 0.908 25 H 0.076 0.924 26 H 0.094 0.906 27 H 0.238 0.762 28 H 0.105 0.895 29 H 0.068 0.932 30 H 0.037 0.963 31 H 0.105 0.895 32 H 0.057 0.943 33 H 0.099 0.901 34 H 0.050 0.950 35 H 0.059 0.941 36 H 0.071 0.929 37 H 0.086 0.914 38 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -9.031 11.684 -9.872 17.763 hybrid contribution 0.513 -1.275 -0.852 1.617 sum -8.518 10.408 -10.724 17.202 Atomic orbital electron populations 1.22429 0.94357 1.02466 1.03720 1.21215 0.93409 0.91731 0.85064 1.22513 1.01891 0.95277 1.03624 1.86598 1.77667 1.57990 1.16689 1.21572 0.94651 1.00612 0.97107 1.22323 0.95960 0.99898 0.89212 1.64821 1.09225 1.16270 1.34688 1.22861 0.88257 0.98725 0.98751 1.22087 0.98994 0.94207 0.97859 1.19508 0.91401 0.93664 0.93211 0.97838 1.21397 1.21139 0.93686 1.21384 0.92982 1.25762 0.95273 1.02783 0.94639 1.70098 1.24037 1.37389 1.24076 0.85639 0.77997 0.80147 0.78047 1.19725 1.20712 1.19463 1.23060 0.99020 0.87257 0.97553 0.90408 0.92966 0.90763 0.90785 0.92433 0.90572 0.76234 0.89472 0.93241 0.96261 0.89451 0.94350 0.90150 0.95009 0.94080 0.92941 0.91427 0.95852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.87 8.82 71.98 0.63 -2.24 16 2 C 0.13 2.65 1.09 -10.80 -0.01 2.64 16 3 C -0.18 -2.95 8.33 71.98 0.60 -2.35 16 4 O -0.58 -13.40 12.59 -148.98 -1.88 -15.27 16 5 C -0.10 -2.84 4.22 30.59 0.13 -2.71 16 6 C 0.05 1.74 4.34 86.30 0.37 2.11 16 7 N -0.53 -20.75 5.35 -883.05 -4.73 -25.48 16 8 C 0.04 1.70 6.70 86.44 0.58 2.28 16 9 C -0.09 -4.65 5.51 31.47 0.17 -4.47 16 10 C 0.04 2.21 2.98 -10.33 -0.03 2.18 16 11 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 12 C -0.54 -30.96 8.43 25.60 0.22 -30.74 16 13 H 0.05 2.94 7.78 -2.91 -0.02 2.92 16 14 C 0.01 0.84 5.33 84.65 0.45 1.29 16 15 N -0.92 -54.69 12.44 21.44 0.27 -54.42 16 16 Si 0.96 44.66 29.54 68.60 2.03 46.69 16 17 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 18 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 19 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 20 C 0.06 2.65 4.78 86.65 0.41 3.06 16 21 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 22 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 23 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 24 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 25 H 0.06 1.10 6.25 -2.39 -0.01 1.09 16 26 H 0.08 0.94 8.14 -2.38 -0.02 0.92 16 27 H 0.39 5.29 9.05 -74.06 -0.67 4.62 16 28 H 0.09 2.31 8.14 -2.38 -0.02 2.29 16 29 H 0.05 1.58 7.14 -2.39 -0.02 1.57 16 30 H 0.02 0.69 7.77 -2.39 -0.02 0.67 16 31 H 0.09 2.47 6.10 -2.39 -0.01 2.45 16 32 H 0.04 1.46 7.67 -2.39 -0.02 1.45 16 33 H 0.08 2.95 8.14 -2.39 -0.02 2.93 16 34 H 0.03 1.68 7.84 -2.39 -0.02 1.66 16 35 H 0.04 2.16 8.05 -2.38 -0.02 2.14 16 36 H 0.26 14.81 8.31 -92.71 -0.77 14.04 16 37 H 0.07 2.92 7.75 -2.39 -0.02 2.90 16 38 H 0.02 1.09 7.92 -2.39 -0.02 1.07 16 Total: -1.00 -65.25 298.53 -0.44 -65.68 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: 0.34 Total: 11.76 kcal Atomic # 6 Polarization: -32.49 SS G_CDS: 3.53 Total: -28.96 kcal Atomic # 7 Polarization: -75.45 SS G_CDS: -4.46 Total: -79.90 kcal Atomic # 8 Polarization: -13.40 SS G_CDS: -1.88 Total: -15.27 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Total: -65.25 -0.44 -65.68 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397675797.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.074 kcal (2) G-P(sol) polarization free energy of solvation -65.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds