Wall clock time and date at job start Mon Mar 30 2020 02:47:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46904 * 111.00144 * 2 1 4 4 C 1.50699 * 109.47030 * 293.95331 * 3 2 1 5 5 H 1.08006 * 120.00292 * 0.02562 * 4 3 2 6 6 C 1.37875 * 119.99875 * 180.02562 * 4 3 2 7 7 N 1.31512 * 120.00203 * 359.97438 * 6 4 3 8 8 Si 1.86805 * 119.99720 * 180.02562 * 6 4 3 9 9 H 1.48500 * 109.47372 * 90.00080 * 8 6 4 10 10 H 1.48504 * 109.46694 * 209.99818 * 8 6 4 11 11 H 1.48498 * 109.47076 * 329.99669 * 8 6 4 12 12 C 1.46897 * 110.99551 * 123.95276 * 2 1 3 13 13 C 1.52997 * 109.47151 * 66.04803 * 12 2 1 14 14 H 1.09000 * 110.27721 * 304.35763 * 13 12 2 15 15 C 1.54949 * 110.39466 * 182.21088 * 13 12 2 16 16 C 1.55306 * 100.94346 * 204.59340 * 15 13 12 17 17 C 1.52997 * 110.84987 * 275.94254 * 16 15 13 18 18 C 1.53001 * 111.01824 * 152.40396 * 16 15 13 19 19 C 1.54379 * 102.25024 * 34.13507 * 16 15 13 20 20 O 1.43233 * 107.59089 * 338.64363 * 19 16 15 21 21 H 1.09001 * 109.47243 * 296.04802 * 1 2 3 22 22 H 1.09005 * 109.46705 * 56.04348 * 1 2 3 23 23 H 1.08998 * 109.47355 * 176.04697 * 1 2 3 24 24 H 1.08999 * 109.46556 * 53.95247 * 3 2 1 25 25 H 1.08997 * 109.47105 * 173.95264 * 3 2 1 26 26 H 0.96997 * 120.00140 * 179.97438 * 7 6 4 27 27 H 1.08994 * 109.47808 * 306.04244 * 12 2 1 28 28 H 1.09001 * 109.46937 * 186.04419 * 12 2 1 29 29 H 1.09003 * 111.12480 * 86.67389 * 15 13 12 30 30 H 1.09003 * 111.12354 * 322.51933 * 15 13 12 31 31 H 1.09002 * 109.47153 * 174.28504 * 17 16 15 32 32 H 1.09001 * 109.46832 * 54.28695 * 17 16 15 33 33 H 1.09004 * 109.47261 * 294.28676 * 17 16 15 34 34 H 1.08998 * 109.46904 * 182.89791 * 18 16 15 35 35 H 1.09002 * 109.47538 * 302.89328 * 18 16 15 36 36 H 1.08993 * 109.47438 * 62.89835 * 18 16 15 37 37 H 1.09002 * 109.83086 * 98.15289 * 19 16 15 38 38 H 1.09001 * 109.82927 * 219.03180 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6370 2.0471 -1.2984 5 1 1.0740 1.5115 -2.0485 6 6 2.0278 3.3491 -1.5289 7 7 2.7130 4.0015 -0.6154 8 14 1.5828 4.1869 -3.1382 9 1 0.2710 4.8680 -2.9955 10 1 2.6255 5.1875 -3.4801 11 1 1.4984 3.1711 -4.2181 12 6 1.9954 -0.7660 1.1376 13 6 1.6314 -2.2426 0.9704 14 1 0.5535 -2.3550 0.8534 15 6 2.1287 -3.0625 2.1874 16 6 2.2584 -4.4761 1.5574 17 6 0.9114 -5.2016 1.5657 18 6 3.3240 -5.3031 2.2796 19 6 2.6992 -4.1522 0.1138 20 8 2.3166 -2.7999 -0.1625 21 1 -0.3634 0.4513 0.9233 22 1 -0.3633 0.5741 -0.8525 23 1 -0.3634 -1.0252 -0.0708 24 1 1.5611 1.9273 0.8309 25 1 3.0798 1.3444 0.1083 26 1 2.9882 4.9173 -0.7777 27 1 1.5611 -0.3873 2.0628 28 1 3.0797 -0.6611 1.1757 29 1 1.3932 -3.0569 2.9919 30 1 3.0945 -2.6985 2.5381 31 1 1.0041 -6.1461 1.0296 32 1 0.1607 -4.5794 1.0784 33 1 0.6097 -5.3961 2.5949 34 1 3.4302 -6.2692 1.7862 35 1 4.2763 -4.7737 2.2506 36 1 3.0245 -5.4557 3.3165 37 1 3.7807 -4.2559 0.0253 38 1 2.2048 -4.8279 -0.5842 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602780587.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:22 Heat of formation + Delta-G solvation = -54.000091 kcal Electronic energy + Delta-G solvation = -16351.738098 eV Core-core repulsion = 13807.827272 eV Total energy + Delta-G solvation = -2543.910826 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.82422 -36.39025 -34.32486 -32.55540 -30.57232 -27.54649 -27.20555 -26.43376 -25.78121 -23.78569 -21.04655 -20.16382 -19.09285 -16.49642 -16.15754 -15.45573 -14.80990 -14.61020 -14.35439 -14.01176 -13.53117 -13.28914 -13.26865 -13.09602 -12.40856 -11.98555 -11.82800 -11.76048 -11.40770 -11.20557 -11.01195 -10.90051 -10.79019 -10.71580 -10.52094 -10.41740 -10.27735 -9.71477 -9.20861 -8.99755 -8.37195 -7.09461 -5.96009 -3.96502 3.36593 3.42367 3.48125 4.04989 4.36202 4.48442 4.64297 4.83357 4.96766 5.18535 5.28982 5.37385 5.41327 5.46392 5.54614 5.56893 5.71943 5.76557 5.81441 5.86893 5.94383 5.99606 6.04045 6.11678 6.21797 6.28536 6.38528 6.52502 6.82115 7.33885 7.40111 7.47075 7.88608 8.18077 8.30024 8.64601 9.11414 9.67247 11.15113 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.054594 B = 0.005217 C = 0.005173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 512.757089 B = 5365.696163 C = 5411.242417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.532 5.532 3 C 0.192 3.808 4 C -0.503 4.503 5 H 0.064 0.936 6 C 0.054 3.946 7 N -0.901 5.901 8 Si 0.898 3.102 9 H -0.282 1.282 10 H -0.287 1.287 11 H -0.273 1.273 12 C 0.056 3.944 13 C 0.090 3.910 14 H 0.066 0.934 15 C -0.144 4.144 16 C -0.102 4.102 17 C -0.137 4.137 18 C -0.134 4.134 19 C 0.056 3.944 20 O -0.355 6.355 21 H 0.008 0.992 22 H 0.074 0.926 23 H 0.044 0.956 24 H -0.011 1.011 25 H 0.029 0.971 26 H 0.260 0.740 27 H 0.033 0.967 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.057 0.943 32 H 0.059 0.941 33 H 0.057 0.943 34 H 0.056 0.944 35 H 0.059 0.941 36 H 0.057 0.943 37 H 0.064 0.936 38 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.805 -17.132 6.714 18.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 N -0.256 5.256 3 C 0.067 3.933 4 C -0.542 4.542 5 H 0.082 0.918 6 C -0.147 4.147 7 N -0.541 5.541 8 Si 0.726 3.274 9 H -0.208 1.208 10 H -0.213 1.213 11 H -0.197 1.197 12 C -0.073 4.073 13 C 0.032 3.968 14 H 0.084 0.916 15 C -0.182 4.182 16 C -0.103 4.103 17 C -0.194 4.194 18 C -0.192 4.192 19 C -0.021 4.021 20 O -0.274 6.274 21 H 0.026 0.974 22 H 0.093 0.907 23 H 0.063 0.937 24 H 0.007 0.993 25 H 0.047 0.953 26 H 0.070 0.930 27 H 0.051 0.949 28 H 0.092 0.908 29 H 0.097 0.903 30 H 0.098 0.902 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.078 0.922 36 H 0.076 0.924 37 H 0.082 0.918 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -1.516 -17.064 6.113 18.189 hybrid contribution -0.477 0.834 0.166 0.975 sum -1.993 -16.230 6.280 17.516 Atomic orbital electron populations 1.22260 0.89253 0.99384 1.00353 1.62045 1.06556 1.17507 1.39525 1.19739 0.95395 0.81595 0.96536 1.21186 1.34464 0.96806 1.01724 0.91828 1.24988 0.95371 0.97362 0.96981 1.69962 1.38619 1.11396 1.34140 0.86500 0.77902 0.79191 0.83855 1.20808 1.21293 1.19732 1.22188 1.00808 0.91422 0.92833 1.23032 0.96064 0.93574 0.84127 0.91583 1.23407 1.02536 0.93818 0.98420 1.22118 0.96467 0.95744 0.95942 1.21815 0.95792 0.99992 1.01834 1.21738 0.97938 0.99467 1.00018 1.23225 0.99479 0.85243 0.94189 1.88623 1.76478 1.24666 1.37605 0.97373 0.90731 0.93687 0.99328 0.95255 0.93022 0.94925 0.90826 0.90306 0.90204 0.92397 0.92200 0.92439 0.92470 0.92209 0.92405 0.91752 0.92031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.75 9.15 60.07 0.55 1.30 16 2 N -0.53 -12.35 4.73 -244.37 -1.16 -13.50 16 3 C 0.19 5.27 4.72 -4.97 -0.02 5.24 16 4 C -0.50 -14.73 8.46 -34.44 -0.29 -15.02 16 5 H 0.06 1.85 7.12 -52.48 -0.37 1.48 16 6 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 7 N -0.90 -27.49 13.29 55.43 0.74 -26.75 16 8 Si 0.90 22.25 29.54 -169.99 -5.02 17.22 16 9 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 10 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 11 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 12 C 0.06 1.08 4.67 -3.83 -0.02 1.06 16 13 C 0.09 1.43 3.05 -25.70 -0.08 1.36 16 14 H 0.07 1.04 6.03 -51.93 -0.31 0.73 16 15 C -0.14 -1.75 5.54 -24.48 -0.14 -1.88 16 16 C -0.10 -1.10 0.95 -152.56 -0.14 -1.24 16 17 C -0.14 -1.30 8.45 37.16 0.31 -0.98 16 18 C -0.13 -1.17 8.52 37.16 0.32 -0.86 16 19 C 0.06 0.73 6.99 37.88 0.26 1.00 16 20 O -0.35 -6.34 11.02 -35.23 -0.39 -6.72 16 21 H 0.01 0.16 8.14 -51.93 -0.42 -0.27 16 22 H 0.07 1.64 6.76 -51.93 -0.35 1.29 16 23 H 0.04 0.81 6.40 -51.93 -0.33 0.47 16 24 H -0.01 -0.32 8.12 -51.93 -0.42 -0.74 16 25 H 0.03 0.86 7.93 -51.93 -0.41 0.44 16 26 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 27 H 0.03 0.59 8.12 -51.93 -0.42 0.17 16 28 H 0.07 1.45 7.93 -51.93 -0.41 1.04 16 29 H 0.08 0.84 8.04 -51.93 -0.42 0.42 16 30 H 0.08 0.97 7.96 -51.93 -0.41 0.56 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.62 7.50 -51.93 -0.39 0.23 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.06 0.53 8.12 -51.93 -0.42 0.11 16 36 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.06 0.80 7.80 -51.93 -0.40 0.40 16 38 H 0.06 0.75 7.84 -51.93 -0.41 0.34 16 LS Contribution 300.54 15.07 4.53 4.53 Total: -1.00 -31.74 300.54 -7.38 -39.13 By element: Atomic # 1 Polarization: 1.40 SS G_CDS: -6.74 Total: -5.34 kcal Atomic # 6 Polarization: -9.21 SS G_CDS: 0.66 Total: -8.56 kcal Atomic # 7 Polarization: -39.84 SS G_CDS: -0.42 Total: -40.26 kcal Atomic # 8 Polarization: -6.34 SS G_CDS: -0.39 Total: -6.72 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -31.74 -7.38 -39.13 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602780587.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.873 kcal (2) G-P(sol) polarization free energy of solvation -31.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds