Wall clock time and date at job start Mon Mar 30 2020 02:47:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46904 * 111.00144 * 2 1 4 4 C 1.50699 * 109.47030 * 293.95331 * 3 2 1 5 5 H 1.08006 * 120.00292 * 0.02562 * 4 3 2 6 6 C 1.37875 * 119.99875 * 180.02562 * 4 3 2 7 7 N 1.31512 * 120.00203 * 359.97438 * 6 4 3 8 8 Si 1.86805 * 119.99720 * 180.02562 * 6 4 3 9 9 H 1.48500 * 109.47372 * 90.00080 * 8 6 4 10 10 H 1.48504 * 109.46694 * 209.99818 * 8 6 4 11 11 H 1.48498 * 109.47076 * 329.99669 * 8 6 4 12 12 C 1.46897 * 110.99551 * 123.95276 * 2 1 3 13 13 C 1.52997 * 109.47151 * 66.04803 * 12 2 1 14 14 H 1.09000 * 110.27721 * 304.35763 * 13 12 2 15 15 C 1.54949 * 110.39466 * 182.21088 * 13 12 2 16 16 C 1.55306 * 100.94346 * 204.59340 * 15 13 12 17 17 C 1.52997 * 110.84987 * 275.94254 * 16 15 13 18 18 C 1.53001 * 111.01824 * 152.40396 * 16 15 13 19 19 C 1.54379 * 102.25024 * 34.13507 * 16 15 13 20 20 O 1.43233 * 107.59089 * 338.64363 * 19 16 15 21 21 H 1.09001 * 109.47243 * 296.04802 * 1 2 3 22 22 H 1.09005 * 109.46705 * 56.04348 * 1 2 3 23 23 H 1.08998 * 109.47355 * 176.04697 * 1 2 3 24 24 H 1.08999 * 109.46556 * 53.95247 * 3 2 1 25 25 H 1.08997 * 109.47105 * 173.95264 * 3 2 1 26 26 H 0.96997 * 120.00140 * 179.97438 * 7 6 4 27 27 H 1.08994 * 109.47808 * 306.04244 * 12 2 1 28 28 H 1.09001 * 109.46937 * 186.04419 * 12 2 1 29 29 H 1.09003 * 111.12480 * 86.67389 * 15 13 12 30 30 H 1.09003 * 111.12354 * 322.51933 * 15 13 12 31 31 H 1.09002 * 109.47153 * 174.28504 * 17 16 15 32 32 H 1.09001 * 109.46832 * 54.28695 * 17 16 15 33 33 H 1.09004 * 109.47261 * 294.28676 * 17 16 15 34 34 H 1.08998 * 109.46904 * 182.89791 * 18 16 15 35 35 H 1.09002 * 109.47538 * 302.89328 * 18 16 15 36 36 H 1.08993 * 109.47438 * 62.89835 * 18 16 15 37 37 H 1.09002 * 109.83086 * 98.15289 * 19 16 15 38 38 H 1.09001 * 109.82927 * 219.03180 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6370 2.0471 -1.2984 5 1 1.0740 1.5115 -2.0485 6 6 2.0278 3.3491 -1.5289 7 7 2.7130 4.0015 -0.6154 8 14 1.5828 4.1869 -3.1382 9 1 0.2710 4.8680 -2.9955 10 1 2.6255 5.1875 -3.4801 11 1 1.4984 3.1711 -4.2181 12 6 1.9954 -0.7660 1.1376 13 6 1.6314 -2.2426 0.9704 14 1 0.5535 -2.3550 0.8534 15 6 2.1287 -3.0625 2.1874 16 6 2.2584 -4.4761 1.5574 17 6 0.9114 -5.2016 1.5657 18 6 3.3240 -5.3031 2.2796 19 6 2.6992 -4.1522 0.1138 20 8 2.3166 -2.7999 -0.1625 21 1 -0.3634 0.4513 0.9233 22 1 -0.3633 0.5741 -0.8525 23 1 -0.3634 -1.0252 -0.0708 24 1 1.5611 1.9273 0.8309 25 1 3.0798 1.3444 0.1083 26 1 2.9882 4.9173 -0.7777 27 1 1.5611 -0.3873 2.0628 28 1 3.0797 -0.6611 1.1757 29 1 1.3932 -3.0569 2.9919 30 1 3.0945 -2.6985 2.5381 31 1 1.0041 -6.1461 1.0296 32 1 0.1607 -4.5794 1.0784 33 1 0.6097 -5.3961 2.5949 34 1 3.4302 -6.2692 1.7862 35 1 4.2763 -4.7737 2.2506 36 1 3.0245 -5.4557 3.3165 37 1 3.7807 -4.2559 0.0253 38 1 2.2048 -4.8279 -0.5842 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602780587.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:22 Heat of formation + Delta-G solvation = -75.666205 kcal Electronic energy + Delta-G solvation = -16352.677611 eV Core-core repulsion = 13807.827272 eV Total energy + Delta-G solvation = -2544.850340 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.94317 -38.13503 -35.39830 -34.70259 -31.98975 -29.19936 -28.25780 -27.82568 -26.92218 -25.56863 -22.75379 -21.61741 -20.12917 -18.53745 -17.54207 -16.84629 -16.44079 -16.12205 -15.75453 -15.53181 -14.87829 -14.61925 -14.34269 -14.08305 -13.93578 -13.46674 -13.29567 -12.89949 -12.84591 -12.67237 -12.57872 -12.49587 -12.31479 -12.21678 -11.92437 -11.65860 -11.59231 -11.38841 -11.09425 -10.62568 -10.33491 -8.95781 -8.20867 -6.31227 1.40150 1.42428 1.54477 2.40452 2.91498 3.11218 3.34065 3.45045 3.82287 3.88169 4.10495 4.18790 4.33133 4.39734 4.54733 4.57697 4.67288 4.72473 4.75338 4.81171 4.87128 4.89039 5.03154 5.05153 5.06073 5.14484 5.16782 5.19244 5.29378 5.32642 5.47172 5.64220 6.03970 6.25906 6.35334 6.66193 6.84681 7.38409 8.90464 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.054594 B = 0.005217 C = 0.005173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 512.757089 B = 5365.696163 C = 5411.242417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.548 5.548 3 C 0.208 3.792 4 C -0.525 4.525 5 H 0.061 0.939 6 C 0.001 3.999 7 N -0.936 5.936 8 Si 0.972 3.028 9 H -0.270 1.270 10 H -0.280 1.280 11 H -0.267 1.267 12 C 0.055 3.945 13 C 0.093 3.907 14 H 0.071 0.929 15 C -0.138 4.138 16 C -0.093 4.093 17 C -0.136 4.136 18 C -0.131 4.131 19 C 0.046 3.954 20 O -0.395 6.395 21 H 0.014 0.986 22 H 0.056 0.944 23 H 0.075 0.925 24 H -0.036 1.036 25 H -0.001 1.001 26 H 0.265 0.735 27 H 0.044 0.956 28 H 0.057 0.943 29 H 0.099 0.901 30 H 0.077 0.923 31 H 0.069 0.931 32 H 0.047 0.953 33 H 0.073 0.927 34 H 0.069 0.931 35 H 0.053 0.947 36 H 0.071 0.929 37 H 0.066 0.934 38 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.647 -18.638 6.772 20.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 N -0.272 5.272 3 C 0.082 3.918 4 C -0.563 4.563 5 H 0.079 0.921 6 C -0.197 4.197 7 N -0.576 5.576 8 Si 0.796 3.204 9 H -0.195 1.195 10 H -0.205 1.205 11 H -0.191 1.191 12 C -0.073 4.073 13 C 0.036 3.964 14 H 0.089 0.911 15 C -0.176 4.176 16 C -0.094 4.094 17 C -0.193 4.193 18 C -0.189 4.189 19 C -0.030 4.030 20 O -0.315 6.315 21 H 0.033 0.967 22 H 0.075 0.925 23 H 0.094 0.906 24 H -0.018 1.018 25 H 0.017 0.983 26 H 0.074 0.926 27 H 0.062 0.938 28 H 0.075 0.925 29 H 0.118 0.882 30 H 0.096 0.904 31 H 0.088 0.912 32 H 0.066 0.934 33 H 0.092 0.908 34 H 0.088 0.912 35 H 0.073 0.927 36 H 0.090 0.910 37 H 0.084 0.916 38 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -2.365 -18.598 6.184 19.742 hybrid contribution -0.185 1.258 0.173 1.284 sum -2.550 -17.340 6.357 18.644 Atomic orbital electron populations 1.22235 0.87614 1.01039 0.99840 1.61961 1.08166 1.15066 1.41993 1.19385 0.93432 0.83871 0.95154 1.21467 1.34916 0.97559 1.02356 0.92125 1.25940 0.94909 0.97961 1.00874 1.70086 1.39331 1.11907 1.36288 0.85345 0.78098 0.78008 0.78938 1.19493 1.20527 1.19128 1.22282 0.99751 0.93372 0.91919 1.22976 0.96198 0.91560 0.85712 0.91145 1.23395 1.02843 0.93972 0.97349 1.22102 0.97946 0.95267 0.94057 1.21820 0.94423 1.00053 1.02979 1.21726 0.96890 0.99543 1.00699 1.23464 0.99813 0.83391 0.96337 1.88570 1.76832 1.27139 1.38910 0.96734 0.92535 0.90632 1.01825 0.98306 0.92621 0.93820 0.92456 0.88203 0.90432 0.91202 0.93400 0.90790 0.91183 0.92740 0.90989 0.91565 0.91119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.68 9.15 127.69 1.17 2.85 16 2 N -0.55 -25.94 4.73 -927.05 -4.39 -30.33 16 3 C 0.21 11.84 4.72 85.56 0.40 12.25 16 4 C -0.52 -31.42 8.46 25.60 0.22 -31.21 16 5 H 0.06 3.59 7.12 -2.91 -0.02 3.57 16 6 C 0.00 0.05 5.46 84.65 0.46 0.52 16 7 N -0.94 -58.09 13.29 21.45 0.28 -57.81 16 8 Si 0.97 45.80 29.54 68.60 2.03 47.83 16 9 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 10 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 11 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 12 C 0.06 2.14 4.67 86.30 0.40 2.54 16 13 C 0.09 2.89 3.05 31.26 0.10 2.99 16 14 H 0.07 2.11 6.03 -2.39 -0.01 2.10 16 15 C -0.14 -3.08 5.54 32.05 0.18 -2.91 16 16 C -0.09 -1.78 0.95 -50.92 -0.05 -1.83 16 17 C -0.14 -2.14 8.45 71.98 0.61 -1.54 16 18 C -0.13 -1.91 8.52 71.98 0.61 -1.30 16 19 C 0.05 1.16 6.99 72.45 0.51 1.67 16 20 O -0.39 -13.99 11.02 -148.98 -1.64 -15.63 16 21 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 22 H 0.06 2.50 6.76 -2.38 -0.02 2.49 16 23 H 0.08 2.62 6.40 -2.39 -0.02 2.60 16 24 H -0.04 -2.17 8.12 -2.39 -0.02 -2.19 16 25 H 0.00 -0.07 7.93 -2.39 -0.02 -0.09 16 26 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 27 H 0.04 1.58 8.12 -2.39 -0.02 1.56 16 28 H 0.06 2.36 7.93 -2.39 -0.02 2.34 16 29 H 0.10 1.83 8.04 -2.39 -0.02 1.81 16 30 H 0.08 1.78 7.96 -2.39 -0.02 1.76 16 31 H 0.07 0.94 8.14 -2.39 -0.02 0.93 16 32 H 0.05 0.88 7.50 -2.39 -0.02 0.86 16 33 H 0.07 0.94 8.14 -2.38 -0.02 0.92 16 34 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.05 0.86 8.12 -2.39 -0.02 0.84 16 36 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.07 1.60 7.80 -2.39 -0.02 1.58 16 38 H 0.07 1.61 7.84 -2.39 -0.02 1.60 16 Total: -1.00 -69.33 300.54 1.88 -67.45 By element: Atomic # 1 Polarization: 3.46 SS G_CDS: 1.00 Total: 4.46 kcal Atomic # 6 Polarization: -20.57 SS G_CDS: 4.61 Total: -15.96 kcal Atomic # 7 Polarization: -84.03 SS G_CDS: -4.10 Total: -88.14 kcal Atomic # 8 Polarization: -13.99 SS G_CDS: -1.64 Total: -15.63 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 2.03 Total: 47.83 kcal Total: -69.33 1.88 -67.45 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602780587.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.217 kcal (2) G-P(sol) polarization free energy of solvation -69.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds