Wall clock time and date at job start Mon Mar 30 2020 03:15:32
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42905 * 1
3 3 C 1.42894 * 113.99811 * 2 1
4 4 C 1.52997 * 109.47141 * 60.00416 * 3 2 1
5 5 C 1.52998 * 109.47512 * 300.00114 * 3 2 1
6 6 C 1.53004 * 109.47063 * 180.02562 * 3 2 1
7 7 C 1.52998 * 109.46816 * 65.00157 * 6 3 2
8 8 N 1.46498 * 109.47057 * 180.02562 * 7 6 3
9 9 C 1.36938 * 120.00146 * 270.00223 * 8 7 6
10 10 H 1.08000 * 120.00170 * 144.92083 * 9 8 7
11 11 C 1.38815 * 119.99580 * 324.91668 * 9 8 7
12 12 N 1.31620 * 120.00080 * 337.93320 * 11 9 8
13 13 Si 1.86798 * 119.99820 * 157.93475 * 11 9 8
14 14 H 1.48507 * 109.47229 * 89.99899 * 13 11 9
15 15 H 1.48494 * 109.47140 * 209.99824 * 13 11 9
16 16 H 1.48497 * 109.47126 * 330.00021 * 13 11 9
17 17 C 1.46503 * 120.00020 * 89.99825 * 8 7 6
18 18 C 1.53005 * 117.49917 * 183.23913 * 17 8 7
19 19 C 1.53005 * 117.49853 * 114.57945 * 17 8 7
20 20 H 1.08997 * 109.47390 * 59.99343 * 1 2 3
21 21 H 1.08998 * 109.47116 * 179.97438 * 1 2 3
22 22 H 1.09003 * 109.46802 * 299.99577 * 1 2 3
23 23 H 1.08996 * 109.47410 * 179.97438 * 4 3 2
24 24 H 1.09000 * 109.47224 * 299.99646 * 4 3 2
25 25 H 1.09000 * 109.47588 * 59.99364 * 4 3 2
26 26 H 1.08997 * 109.47245 * 300.00003 * 5 3 2
27 27 H 1.09000 * 109.46919 * 60.00313 * 5 3 2
28 28 H 1.09003 * 109.47249 * 180.02562 * 5 3 2
29 29 H 1.09000 * 109.46966 * 305.00534 * 6 3 2
30 30 H 1.08995 * 109.47477 * 185.00063 * 6 3 2
31 31 H 1.08997 * 109.47744 * 60.00190 * 7 6 3
32 32 H 1.09006 * 109.47483 * 299.99985 * 7 6 3
33 33 H 0.96995 * 119.99672 * 176.09015 * 12 11 9
34 34 H 1.09003 * 115.54972 * 328.90812 * 17 8 7
35 35 H 1.09001 * 117.49843 * 359.97438 * 18 17 8
36 36 H 1.09000 * 117.49946 * 145.02222 * 18 17 8
37 37 H 1.08996 * 117.50072 * 214.97872 * 19 17 8
38 38 H 1.09001 * 117.49588 * 359.97438 * 19 17 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0102 1.3054 0.0000
4 6 1.5588 2.0646 1.2493
5 6 1.5588 2.0648 -1.2492
6 6 3.5355 1.1846 -0.0006
7 6 3.9952 0.5369 -1.3083
8 7 5.4555 0.4207 -1.3087
9 6 6.2232 1.4380 -1.8097
10 1 7.1774 1.6670 -1.3586
11 6 5.7750 2.1748 -2.8975
12 7 4.8736 1.6660 -3.7105
13 14 6.4511 3.8883 -3.2073
14 1 7.6501 3.7972 -4.0789
15 1 5.4151 4.7159 -3.8757
16 1 6.8259 4.5139 -1.9138
17 6 6.0946 -0.7838 -0.7731
18 6 7.6238 -0.8133 -0.7317
19 6 6.8688 -1.6680 -1.7529
20 1 -0.3634 0.5139 -0.8899
21 1 -0.3633 -1.0276 -0.0005
22 1 -0.3633 0.5138 0.8901
23 1 2.0025 3.0602 1.2495
24 1 0.4722 2.1507 1.2493
25 1 1.8804 1.5237 2.1393
26 1 1.8804 1.5239 -2.1392
27 1 0.4722 2.1509 -1.2491
28 1 2.0025 3.0604 -1.2494
29 1 3.8515 0.5681 0.8409
30 1 3.9786 2.1764 0.0889
31 1 3.6792 1.1533 -2.1499
32 1 3.5521 -0.4550 -1.3980
33 1 4.5187 2.2015 -4.4372
34 1 5.5596 -1.2792 0.0372
35 1 8.1544 0.0633 -1.1035
36 1 8.0949 -1.3284 0.1055
37 1 6.8434 -2.7450 -1.5870
38 1 6.9022 -1.3537 -2.7960
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000615778461.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:15:32
Heat of formation + Delta-G solvation = -21.982342 kcal
Electronic energy + Delta-G solvation = -16896.401642 eV
Core-core repulsion = 14353.879210 eV
Total energy + Delta-G solvation = -2542.522433 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 227.163 amu
Computer time = 0.36 seconds
Orbital eigenvalues (eV)
-40.08643 -38.61946 -35.69690 -34.29713 -32.41260 -29.59519 -28.35650 -27.54934
-26.20484 -23.59434 -22.92239 -21.50871 -20.60809 -18.22450 -17.34427 -17.05723
-16.62851 -16.06473 -15.96931 -15.71880 -14.74633 -14.46734 -14.21396 -13.88161
-13.47813 -13.35560 -13.00303 -12.90191 -12.83301 -12.57532 -12.48108 -12.31103
-12.18268 -11.93397 -11.87873 -11.38913 -11.22726 -11.15486 -10.84328 -10.42741
-10.37205 -8.48586 -7.74908 -5.40560 1.44288 1.47237 1.56715 2.51235
2.98411 3.16096 3.42979 3.51206 4.00508 4.03234 4.22136 4.30487
4.50116 4.53672 4.55940 4.57146 4.64179 4.70022 4.74540 4.87949
4.91506 4.92620 4.98522 5.06627 5.13510 5.20266 5.23790 5.37900
5.40959 5.52274 5.55787 5.71455 5.97505 6.46947 6.49369 7.19038
7.90082 8.41650 9.15306
Molecular weight = 227.16amu
Principal moments of inertia in cm(-1)
A = 0.020913 B = 0.010227 C = 0.007841
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1338.579053 B = 2737.114429 C = 3570.133765
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.019 3.981
2 O -0.402 6.402
3 C 0.115 3.885
4 C -0.167 4.167
5 C -0.170 4.170
6 C -0.106 4.106
7 C 0.151 3.849
8 N -0.572 5.572
9 C -0.260 4.260
10 H 0.060 0.940
11 C -0.036 4.036
12 N -0.913 5.913
13 Si 0.951 3.049
14 H -0.288 1.288
15 H -0.288 1.288
16 H -0.271 1.271
17 C 0.099 3.901
18 C -0.179 4.179
19 C -0.220 4.220
20 H 0.044 0.956
21 H 0.092 0.908
22 H 0.057 0.943
23 H 0.069 0.931
24 H 0.075 0.925
25 H 0.062 0.938
26 H 0.046 0.954
27 H 0.074 0.926
28 H 0.059 0.941
29 H 0.049 0.951
30 H 0.058 0.942
31 H 0.084 0.916
32 H 0.015 0.985
33 H 0.250 0.750
34 H 0.104 0.896
35 H 0.076 0.924
36 H 0.111 0.889
37 H 0.100 0.900
38 H 0.054 0.946
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.290 -0.578 8.445 11.171
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.077 4.077
2 O -0.322 6.322
3 C 0.076 3.924
4 C -0.225 4.225
5 C -0.228 4.228
6 C -0.145 4.145
7 C 0.026 3.974
8 N -0.290 5.290
9 C -0.390 4.390
10 H 0.077 0.923
11 C -0.233 4.233
12 N -0.557 5.557
13 Si 0.778 3.222
14 H -0.215 1.215
15 H -0.214 1.214
16 H -0.195 1.195
17 C -0.010 4.010
18 C -0.217 4.217
19 C -0.261 4.261
20 H 0.063 0.937
21 H 0.111 0.889
22 H 0.075 0.925
23 H 0.088 0.912
24 H 0.094 0.906
25 H 0.082 0.918
26 H 0.065 0.935
27 H 0.092 0.908
28 H 0.078 0.922
29 H 0.068 0.932
30 H 0.077 0.923
31 H 0.102 0.898
32 H 0.033 0.967
33 H 0.060 0.940
34 H 0.122 0.878
35 H 0.094 0.906
36 H 0.130 0.870
37 H 0.118 0.882
38 H 0.072 0.928
Dipole moment (debyes) X Y Z Total
from point charges -7.238 -0.670 8.271 11.011
hybrid contribution 0.281 0.969 -0.726 1.243
sum -6.957 0.299 7.544 10.267
Atomic orbital electron populations
1.22939 0.80654 1.03356 1.00762 1.87969 1.20833 1.28191 1.95166
1.21487 0.93137 0.82997 0.94819 1.22331 1.02308 1.00748 0.97087
1.22357 1.01588 1.00552 0.98257 1.21931 0.92114 1.00760 0.99743
1.20948 0.81875 0.97588 0.97025 1.43724 1.02061 1.14261 1.68929
1.19243 1.03633 1.08449 1.07671 0.92288 1.25743 1.00443 1.02818
0.94341 1.70186 1.33672 1.35729 1.16109 0.85560 0.77494 0.81240
0.77873 1.21454 1.21416 1.19548 1.21510 0.91483 0.90489 0.97498
1.23035 0.95204 1.01835 1.01626 1.23268 1.09785 0.97275 0.95795
0.93744 0.88908 0.92453 0.91233 0.90639 0.91846 0.93537 0.90760
0.92230 0.93190 0.92314 0.89835 0.96698 0.94044 0.87808 0.90581
0.87041 0.88167 0.92761
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.46 10.21 113.37 1.16 1.61 16
2 O -0.40 -13.67 9.88 -148.98 -1.47 -15.14 16
3 C 0.12 3.86 0.82 -10.79 -0.01 3.85 16
4 C -0.17 -4.36 8.25 71.98 0.59 -3.77 16
5 C -0.17 -5.75 7.76 71.98 0.56 -5.19 16
6 C -0.11 -4.31 4.83 30.60 0.15 -4.16 16
7 C 0.15 7.37 4.74 86.38 0.41 7.78 16
8 N -0.57 -29.42 2.78 -678.00 -1.88 -31.30 16
9 C -0.26 -14.30 8.63 84.03 0.73 -13.57 16
10 H 0.06 3.25 6.55 -2.91 -0.02 3.23 16
11 C -0.04 -2.01 4.96 84.86 0.42 -1.59 16
12 N -0.91 -53.25 11.33 21.65 0.25 -53.01 16
13 Si 0.95 44.44 29.61 68.60 2.03 46.47 16
14 H -0.29 -13.42 7.11 99.48 0.71 -12.72 16
15 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16
16 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16
17 C 0.10 4.39 6.56 44.99 0.30 4.68 16
18 C -0.18 -7.11 9.80 30.62 0.30 -6.81 16
19 C -0.22 -9.31 10.36 30.62 0.32 -8.99 16
20 H 0.04 1.04 6.42 -2.39 -0.02 1.02 16
21 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16
22 H 0.06 1.15 6.42 -2.39 -0.02 1.14 16
23 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16
24 H 0.07 1.61 6.54 -2.39 -0.02 1.60 16
25 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16
26 H 0.05 1.87 6.34 -2.39 -0.02 1.85 16
27 H 0.07 2.03 6.54 -2.39 -0.02 2.01 16
28 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16
29 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16
30 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16
31 H 0.08 4.51 3.56 -2.39 -0.01 4.50 16
32 H 0.01 0.74 7.75 -2.38 -0.02 0.72 16
33 H 0.25 14.09 8.32 -92.71 -0.77 13.32 16
34 H 0.10 4.19 8.14 -2.39 -0.02 4.17 16
35 H 0.08 3.34 6.37 -2.39 -0.02 3.32 16
36 H 0.11 3.57 8.14 -2.39 -0.02 3.55 16
37 H 0.10 3.56 8.14 -2.39 -0.02 3.54 16
38 H 0.05 2.68 8.14 -2.39 -0.02 2.66 16
Total: -1.00 -62.48 298.08 4.85 -57.62
By element:
Atomic # 1 Polarization: 20.50 SS G_CDS: 1.02 Total: 21.51 kcal
Atomic # 6 Polarization: -31.07 SS G_CDS: 4.92 Total: -26.16 kcal
Atomic # 7 Polarization: -82.67 SS G_CDS: -1.64 Total: -84.31 kcal
Atomic # 8 Polarization: -13.67 SS G_CDS: -1.47 Total: -15.14 kcal
Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.47 kcal
Total: -62.48 4.85 -57.62 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000615778461.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 35.642 kcal
(2) G-P(sol) polarization free energy of solvation -62.478 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.837 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.854 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.624 kcal
(6) G-S(sol) free energy of system = (1) + (5) -21.982 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.36 seconds