Wall clock time and date at job start Mon Mar 30 2020 03:15:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42894 * 113.99811 * 2 1 4 4 C 1.52997 * 109.47141 * 60.00416 * 3 2 1 5 5 C 1.52998 * 109.47512 * 300.00114 * 3 2 1 6 6 C 1.53004 * 109.47063 * 180.02562 * 3 2 1 7 7 C 1.52998 * 109.46816 * 65.00157 * 6 3 2 8 8 N 1.46498 * 109.47057 * 180.02562 * 7 6 3 9 9 C 1.36938 * 120.00146 * 270.00223 * 8 7 6 10 10 H 1.08000 * 120.00170 * 144.92083 * 9 8 7 11 11 C 1.38815 * 119.99580 * 324.91668 * 9 8 7 12 12 N 1.31620 * 120.00080 * 337.93320 * 11 9 8 13 13 Si 1.86798 * 119.99820 * 157.93475 * 11 9 8 14 14 H 1.48507 * 109.47229 * 89.99899 * 13 11 9 15 15 H 1.48494 * 109.47140 * 209.99824 * 13 11 9 16 16 H 1.48497 * 109.47126 * 330.00021 * 13 11 9 17 17 C 1.46503 * 120.00020 * 89.99825 * 8 7 6 18 18 C 1.53005 * 117.49917 * 183.23913 * 17 8 7 19 19 C 1.53005 * 117.49853 * 114.57945 * 17 8 7 20 20 H 1.08997 * 109.47390 * 59.99343 * 1 2 3 21 21 H 1.08998 * 109.47116 * 179.97438 * 1 2 3 22 22 H 1.09003 * 109.46802 * 299.99577 * 1 2 3 23 23 H 1.08996 * 109.47410 * 179.97438 * 4 3 2 24 24 H 1.09000 * 109.47224 * 299.99646 * 4 3 2 25 25 H 1.09000 * 109.47588 * 59.99364 * 4 3 2 26 26 H 1.08997 * 109.47245 * 300.00003 * 5 3 2 27 27 H 1.09000 * 109.46919 * 60.00313 * 5 3 2 28 28 H 1.09003 * 109.47249 * 180.02562 * 5 3 2 29 29 H 1.09000 * 109.46966 * 305.00534 * 6 3 2 30 30 H 1.08995 * 109.47477 * 185.00063 * 6 3 2 31 31 H 1.08997 * 109.47744 * 60.00190 * 7 6 3 32 32 H 1.09006 * 109.47483 * 299.99985 * 7 6 3 33 33 H 0.96995 * 119.99672 * 176.09015 * 12 11 9 34 34 H 1.09003 * 115.54972 * 328.90812 * 17 8 7 35 35 H 1.09001 * 117.49843 * 359.97438 * 18 17 8 36 36 H 1.09000 * 117.49946 * 145.02222 * 18 17 8 37 37 H 1.08996 * 117.50072 * 214.97872 * 19 17 8 38 38 H 1.09001 * 117.49588 * 359.97438 * 19 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.5588 2.0646 1.2493 5 6 1.5588 2.0648 -1.2492 6 6 3.5355 1.1846 -0.0006 7 6 3.9952 0.5369 -1.3083 8 7 5.4555 0.4207 -1.3087 9 6 6.2232 1.4380 -1.8097 10 1 7.1774 1.6670 -1.3586 11 6 5.7750 2.1748 -2.8975 12 7 4.8736 1.6660 -3.7105 13 14 6.4511 3.8883 -3.2073 14 1 7.6501 3.7972 -4.0789 15 1 5.4151 4.7159 -3.8757 16 1 6.8259 4.5139 -1.9138 17 6 6.0946 -0.7838 -0.7731 18 6 7.6238 -0.8133 -0.7317 19 6 6.8688 -1.6680 -1.7529 20 1 -0.3634 0.5139 -0.8899 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8901 23 1 2.0025 3.0602 1.2495 24 1 0.4722 2.1507 1.2493 25 1 1.8804 1.5237 2.1393 26 1 1.8804 1.5239 -2.1392 27 1 0.4722 2.1509 -1.2491 28 1 2.0025 3.0604 -1.2494 29 1 3.8515 0.5681 0.8409 30 1 3.9786 2.1764 0.0889 31 1 3.6792 1.1533 -2.1499 32 1 3.5521 -0.4550 -1.3980 33 1 4.5187 2.2015 -4.4372 34 1 5.5596 -1.2792 0.0372 35 1 8.1544 0.0633 -1.1035 36 1 8.0949 -1.3284 0.1055 37 1 6.8434 -2.7450 -1.5870 38 1 6.9022 -1.3537 -2.7960 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000615778461.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:32 Heat of formation + Delta-G solvation = -21.982342 kcal Electronic energy + Delta-G solvation = -16896.401642 eV Core-core repulsion = 14353.879210 eV Total energy + Delta-G solvation = -2542.522433 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.08643 -38.61946 -35.69690 -34.29713 -32.41260 -29.59519 -28.35650 -27.54934 -26.20484 -23.59434 -22.92239 -21.50871 -20.60809 -18.22450 -17.34427 -17.05723 -16.62851 -16.06473 -15.96931 -15.71880 -14.74633 -14.46734 -14.21396 -13.88161 -13.47813 -13.35560 -13.00303 -12.90191 -12.83301 -12.57532 -12.48108 -12.31103 -12.18268 -11.93397 -11.87873 -11.38913 -11.22726 -11.15486 -10.84328 -10.42741 -10.37205 -8.48586 -7.74908 -5.40560 1.44288 1.47237 1.56715 2.51235 2.98411 3.16096 3.42979 3.51206 4.00508 4.03234 4.22136 4.30487 4.50116 4.53672 4.55940 4.57146 4.64179 4.70022 4.74540 4.87949 4.91506 4.92620 4.98522 5.06627 5.13510 5.20266 5.23790 5.37900 5.40959 5.52274 5.55787 5.71455 5.97505 6.46947 6.49369 7.19038 7.90082 8.41650 9.15306 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.020913 B = 0.010227 C = 0.007841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.579053 B = 2737.114429 C = 3570.133765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.402 6.402 3 C 0.115 3.885 4 C -0.167 4.167 5 C -0.170 4.170 6 C -0.106 4.106 7 C 0.151 3.849 8 N -0.572 5.572 9 C -0.260 4.260 10 H 0.060 0.940 11 C -0.036 4.036 12 N -0.913 5.913 13 Si 0.951 3.049 14 H -0.288 1.288 15 H -0.288 1.288 16 H -0.271 1.271 17 C 0.099 3.901 18 C -0.179 4.179 19 C -0.220 4.220 20 H 0.044 0.956 21 H 0.092 0.908 22 H 0.057 0.943 23 H 0.069 0.931 24 H 0.075 0.925 25 H 0.062 0.938 26 H 0.046 0.954 27 H 0.074 0.926 28 H 0.059 0.941 29 H 0.049 0.951 30 H 0.058 0.942 31 H 0.084 0.916 32 H 0.015 0.985 33 H 0.250 0.750 34 H 0.104 0.896 35 H 0.076 0.924 36 H 0.111 0.889 37 H 0.100 0.900 38 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.290 -0.578 8.445 11.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.322 6.322 3 C 0.076 3.924 4 C -0.225 4.225 5 C -0.228 4.228 6 C -0.145 4.145 7 C 0.026 3.974 8 N -0.290 5.290 9 C -0.390 4.390 10 H 0.077 0.923 11 C -0.233 4.233 12 N -0.557 5.557 13 Si 0.778 3.222 14 H -0.215 1.215 15 H -0.214 1.214 16 H -0.195 1.195 17 C -0.010 4.010 18 C -0.217 4.217 19 C -0.261 4.261 20 H 0.063 0.937 21 H 0.111 0.889 22 H 0.075 0.925 23 H 0.088 0.912 24 H 0.094 0.906 25 H 0.082 0.918 26 H 0.065 0.935 27 H 0.092 0.908 28 H 0.078 0.922 29 H 0.068 0.932 30 H 0.077 0.923 31 H 0.102 0.898 32 H 0.033 0.967 33 H 0.060 0.940 34 H 0.122 0.878 35 H 0.094 0.906 36 H 0.130 0.870 37 H 0.118 0.882 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -7.238 -0.670 8.271 11.011 hybrid contribution 0.281 0.969 -0.726 1.243 sum -6.957 0.299 7.544 10.267 Atomic orbital electron populations 1.22939 0.80654 1.03356 1.00762 1.87969 1.20833 1.28191 1.95166 1.21487 0.93137 0.82997 0.94819 1.22331 1.02308 1.00748 0.97087 1.22357 1.01588 1.00552 0.98257 1.21931 0.92114 1.00760 0.99743 1.20948 0.81875 0.97588 0.97025 1.43724 1.02061 1.14261 1.68929 1.19243 1.03633 1.08449 1.07671 0.92288 1.25743 1.00443 1.02818 0.94341 1.70186 1.33672 1.35729 1.16109 0.85560 0.77494 0.81240 0.77873 1.21454 1.21416 1.19548 1.21510 0.91483 0.90489 0.97498 1.23035 0.95204 1.01835 1.01626 1.23268 1.09785 0.97275 0.95795 0.93744 0.88908 0.92453 0.91233 0.90639 0.91846 0.93537 0.90760 0.92230 0.93190 0.92314 0.89835 0.96698 0.94044 0.87808 0.90581 0.87041 0.88167 0.92761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.46 10.21 113.37 1.16 1.61 16 2 O -0.40 -13.67 9.88 -148.98 -1.47 -15.14 16 3 C 0.12 3.86 0.82 -10.79 -0.01 3.85 16 4 C -0.17 -4.36 8.25 71.98 0.59 -3.77 16 5 C -0.17 -5.75 7.76 71.98 0.56 -5.19 16 6 C -0.11 -4.31 4.83 30.60 0.15 -4.16 16 7 C 0.15 7.37 4.74 86.38 0.41 7.78 16 8 N -0.57 -29.42 2.78 -678.00 -1.88 -31.30 16 9 C -0.26 -14.30 8.63 84.03 0.73 -13.57 16 10 H 0.06 3.25 6.55 -2.91 -0.02 3.23 16 11 C -0.04 -2.01 4.96 84.86 0.42 -1.59 16 12 N -0.91 -53.25 11.33 21.65 0.25 -53.01 16 13 Si 0.95 44.44 29.61 68.60 2.03 46.47 16 14 H -0.29 -13.42 7.11 99.48 0.71 -12.72 16 15 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 16 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 17 C 0.10 4.39 6.56 44.99 0.30 4.68 16 18 C -0.18 -7.11 9.80 30.62 0.30 -6.81 16 19 C -0.22 -9.31 10.36 30.62 0.32 -8.99 16 20 H 0.04 1.04 6.42 -2.39 -0.02 1.02 16 21 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 22 H 0.06 1.15 6.42 -2.39 -0.02 1.14 16 23 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 24 H 0.07 1.61 6.54 -2.39 -0.02 1.60 16 25 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 26 H 0.05 1.87 6.34 -2.39 -0.02 1.85 16 27 H 0.07 2.03 6.54 -2.39 -0.02 2.01 16 28 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 29 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 30 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 31 H 0.08 4.51 3.56 -2.39 -0.01 4.50 16 32 H 0.01 0.74 7.75 -2.38 -0.02 0.72 16 33 H 0.25 14.09 8.32 -92.71 -0.77 13.32 16 34 H 0.10 4.19 8.14 -2.39 -0.02 4.17 16 35 H 0.08 3.34 6.37 -2.39 -0.02 3.32 16 36 H 0.11 3.57 8.14 -2.39 -0.02 3.55 16 37 H 0.10 3.56 8.14 -2.39 -0.02 3.54 16 38 H 0.05 2.68 8.14 -2.39 -0.02 2.66 16 Total: -1.00 -62.48 298.08 4.85 -57.62 By element: Atomic # 1 Polarization: 20.50 SS G_CDS: 1.02 Total: 21.51 kcal Atomic # 6 Polarization: -31.07 SS G_CDS: 4.92 Total: -26.16 kcal Atomic # 7 Polarization: -82.67 SS G_CDS: -1.64 Total: -84.31 kcal Atomic # 8 Polarization: -13.67 SS G_CDS: -1.47 Total: -15.14 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.47 kcal Total: -62.48 4.85 -57.62 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000615778461.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.642 kcal (2) G-P(sol) polarization free energy of solvation -62.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds