Wall clock time and date at job start Mon Mar 30 2020 02:48:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46899 * 111.00109 * 2 1 4 4 C 1.52997 * 109.47518 * 63.20128 * 3 2 1 5 5 C 1.50696 * 109.47312 * 180.02562 * 4 3 2 6 6 H 1.07999 * 120.00331 * 359.97438 * 5 4 3 7 7 C 1.37882 * 120.00064 * 180.02562 * 5 4 3 8 8 N 1.31509 * 120.00080 * 179.97438 * 7 5 4 9 9 Si 1.86803 * 119.99762 * 359.97438 * 7 5 4 10 10 H 1.48497 * 109.46884 * 270.00021 * 9 7 5 11 11 H 1.48499 * 109.46893 * 150.00003 * 9 7 5 12 12 H 1.48497 * 109.47266 * 29.99858 * 9 7 5 13 13 C 1.46902 * 111.00131 * 236.04231 * 2 1 3 14 14 C 1.52999 * 109.47440 * 203.14875 * 13 2 1 15 15 C 1.53000 * 110.75085 * 55.84626 * 14 13 2 16 16 C 1.55298 * 110.84654 * 179.54174 * 14 13 2 17 17 C 1.54954 * 100.94075 * 152.32039 * 16 14 13 18 18 O 1.43641 * 105.13670 * 323.55889 * 17 16 14 19 19 C 1.43236 * 109.97228 * 24.42376 * 18 17 16 20 20 H 1.08998 * 109.46884 * 63.63617 * 1 2 3 21 21 H 1.08998 * 109.47193 * 183.64646 * 1 2 3 22 22 H 1.09005 * 109.47101 * 303.64363 * 1 2 3 23 23 H 1.09003 * 109.47163 * 303.19724 * 3 2 1 24 24 H 1.09007 * 109.46800 * 183.20285 * 3 2 1 25 25 H 1.09003 * 109.47234 * 59.99639 * 4 3 2 26 26 H 1.08996 * 109.46810 * 300.00163 * 4 3 2 27 27 H 0.96995 * 120.00206 * 179.97438 * 8 7 5 28 28 H 1.09000 * 109.46664 * 323.15207 * 13 2 1 29 29 H 1.08997 * 109.46688 * 83.14542 * 13 2 1 30 30 H 1.08996 * 109.47094 * 64.77287 * 15 14 13 31 31 H 1.09002 * 109.46829 * 184.77776 * 15 14 13 32 32 H 1.09008 * 109.47138 * 304.77242 * 15 14 13 33 33 H 1.08996 * 111.12901 * 270.24150 * 16 14 13 34 34 H 1.09002 * 111.12525 * 34.40584 * 16 14 13 35 35 H 1.09001 * 110.30688 * 204.63660 * 17 16 14 36 36 H 1.09003 * 110.38700 * 82.51635 * 17 16 14 37 37 H 1.09005 * 109.83008 * 238.77454 * 19 18 17 38 38 H 1.09002 * 109.82914 * 117.80463 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.5711 2.0807 1.2875 5 6 2.1107 3.4877 1.2872 6 1 2.6979 3.8407 0.4524 7 6 1.8555 4.3242 2.3532 8 7 2.3268 5.5519 2.3531 9 14 0.8404 3.7134 3.7975 10 1 -0.5955 3.9995 3.5494 11 1 1.2762 4.4059 5.0368 12 1 1.0335 2.2495 3.9544 13 6 1.9954 -0.7661 -1.1375 14 6 3.4165 -1.2369 -0.8215 15 6 3.4439 -2.0430 0.4786 16 6 4.0005 -2.0615 -2.0007 17 6 5.5168 -1.7968 -1.8221 18 8 5.6101 -0.4330 -1.3811 19 6 4.3880 -0.0394 -0.7461 20 1 -0.3633 0.4564 -0.9208 21 1 -0.3633 -1.0256 0.0654 22 1 -0.3633 0.5694 0.8556 23 1 1.6003 1.9123 -0.8600 24 1 3.0836 1.3428 -0.0574 25 1 1.9662 1.5398 2.1475 26 1 0.4830 2.1092 1.3449 27 1 2.1470 6.1405 3.1028 28 1 1.3579 -1.6313 -1.3190 29 1 2.0111 -0.1337 -2.0252 30 1 2.8666 -2.9586 0.3506 31 1 4.4746 -2.2951 0.7281 32 1 3.0100 -1.4494 1.2834 33 1 3.7711 -3.1214 -1.8906 34 1 3.6458 -1.6822 -2.9591 35 1 6.0374 -1.9241 -2.7713 36 1 5.9333 -2.4670 -1.0701 37 1 3.9600 0.8174 -1.2666 38 1 4.5787 0.2170 0.2960 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687526748.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:07 Heat of formation + Delta-G solvation = -44.026844 kcal Electronic energy + Delta-G solvation = -16715.704926 eV Core-core repulsion = 14172.226572 eV Total energy + Delta-G solvation = -2543.478354 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.96149 -37.14625 -33.79066 -32.69725 -30.19623 -29.73750 -27.15694 -25.94751 -25.67467 -22.75476 -21.86455 -19.84274 -19.29278 -16.82292 -16.28450 -15.96256 -14.97758 -14.68593 -14.42926 -14.23148 -13.81643 -13.59808 -12.94803 -12.76025 -12.55660 -12.51502 -12.11455 -11.67446 -11.50764 -11.44008 -11.25774 -10.83439 -10.64814 -10.58020 -10.43460 -9.85446 -9.82430 -9.64518 -9.32295 -9.15717 -8.51277 -7.87039 -6.02927 -4.01056 3.32053 3.39906 3.45295 3.98564 4.25020 4.47059 4.54734 4.86170 4.94577 5.21993 5.26294 5.31109 5.31511 5.54494 5.62454 5.68441 5.68605 5.76366 5.86978 5.91344 5.99681 6.04604 6.14387 6.21566 6.25912 6.31293 6.35203 6.56900 6.76476 7.13826 7.17890 7.29941 7.57415 7.61903 7.85692 8.54541 9.01471 9.59487 11.10490 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.033040 B = 0.007046 C = 0.006384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.264978 B = 3972.653533 C = 4385.119915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.543 5.543 3 C 0.050 3.950 4 C -0.007 4.007 5 C -0.521 4.521 6 H 0.071 0.929 7 C 0.068 3.932 8 N -0.903 5.903 9 Si 0.879 3.121 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.263 1.263 13 C 0.069 3.931 14 C -0.085 4.085 15 C -0.128 4.128 16 C -0.149 4.149 17 C 0.053 3.947 18 O -0.388 6.388 19 C 0.054 3.946 20 H 0.019 0.981 21 H 0.057 0.943 22 H 0.075 0.925 23 H 0.025 0.975 24 H 0.084 0.916 25 H 0.024 0.976 26 H 0.011 0.989 27 H 0.263 0.737 28 H 0.069 0.931 29 H 0.036 0.964 30 H 0.050 0.950 31 H 0.047 0.953 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.076 0.924 35 H 0.079 0.921 36 H 0.057 0.943 37 H 0.078 0.922 38 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.390 -16.770 -7.061 18.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.267 5.267 3 C -0.076 4.076 4 C -0.045 4.045 5 C -0.560 4.560 6 H 0.089 0.911 7 C -0.133 4.133 8 N -0.542 5.542 9 Si 0.706 3.294 10 H -0.204 1.204 11 H -0.214 1.214 12 H -0.188 1.188 13 C -0.059 4.059 14 C -0.086 4.086 15 C -0.185 4.185 16 C -0.187 4.187 17 C -0.024 4.024 18 O -0.308 6.308 19 C -0.021 4.021 20 H 0.038 0.962 21 H 0.075 0.925 22 H 0.094 0.906 23 H 0.043 0.957 24 H 0.102 0.898 25 H 0.042 0.958 26 H 0.029 0.971 27 H 0.073 0.927 28 H 0.087 0.913 29 H 0.054 0.946 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.099 0.901 33 H 0.099 0.901 34 H 0.094 0.906 35 H 0.097 0.903 36 H 0.075 0.925 37 H 0.096 0.904 38 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 0.723 -16.693 -6.543 17.944 hybrid contribution -1.070 0.147 0.050 1.081 sum -0.346 -16.546 -6.493 17.777 Atomic orbital electron populations 1.22384 0.88026 1.00910 1.00990 1.62054 1.07407 1.15947 1.41286 1.22611 1.00577 0.85082 0.99368 1.19581 0.96016 0.95656 0.93236 1.21086 1.33782 0.95179 1.05936 0.91129 1.24993 0.95508 0.94671 0.98153 1.69912 1.45955 1.06531 1.31830 0.86782 0.80592 0.79710 0.82271 1.20432 1.21420 1.18759 1.22011 0.94223 0.97472 0.92214 1.22078 0.95313 0.95315 0.95917 1.21687 1.00792 0.99220 0.96800 1.23340 0.95735 1.00833 0.98780 1.23285 0.95676 0.84328 0.99109 1.88418 1.36920 1.27589 1.77837 1.23715 0.83402 0.96497 0.98525 0.96197 0.92458 0.90609 0.95680 0.89843 0.95788 0.97109 0.92744 0.91283 0.94604 0.93100 0.93396 0.90148 0.90089 0.90577 0.90323 0.92488 0.90438 0.90336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 9.26 60.06 0.56 0.94 16 2 N -0.54 -9.00 3.77 -242.92 -0.92 -9.91 16 3 C 0.05 1.00 4.29 -3.83 -0.02 0.98 16 4 C -0.01 -0.17 3.90 -27.89 -0.11 -0.28 16 5 C -0.52 -14.94 9.66 -34.44 -0.33 -15.28 16 6 H 0.07 2.17 7.99 -52.49 -0.42 1.76 16 7 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 8 N -0.90 -28.10 13.96 55.43 0.77 -27.32 16 9 Si 0.88 21.93 27.47 -169.99 -4.67 17.26 16 10 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 12 H -0.26 -6.34 6.54 56.52 0.37 -5.97 16 13 C 0.07 0.95 4.20 -3.82 -0.02 0.93 16 14 C -0.09 -1.12 0.72 -152.57 -0.11 -1.23 16 15 C -0.13 -1.62 8.29 37.16 0.31 -1.31 16 16 C -0.15 -1.58 6.12 -24.48 -0.15 -1.73 16 17 C 0.05 0.61 7.50 38.19 0.29 0.90 16 18 O -0.39 -6.11 11.36 -35.23 -0.40 -6.51 16 19 C 0.05 0.85 5.15 37.88 0.19 1.05 16 20 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 21 H 0.06 0.73 8.05 -51.93 -0.42 0.31 16 22 H 0.08 1.26 6.21 -51.93 -0.32 0.94 16 23 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 24 H 0.08 1.67 3.77 -51.92 -0.20 1.47 16 25 H 0.02 0.59 7.20 -51.93 -0.37 0.22 16 26 H 0.01 0.26 5.83 -51.93 -0.30 -0.05 16 27 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 28 H 0.07 0.83 7.82 -51.93 -0.41 0.42 16 29 H 0.04 0.50 7.85 -51.93 -0.41 0.10 16 30 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.05 0.58 7.70 -51.93 -0.40 0.18 16 32 H 0.08 1.19 7.44 -51.92 -0.39 0.80 16 33 H 0.08 0.71 8.04 -51.93 -0.42 0.29 16 34 H 0.08 0.78 8.04 -51.93 -0.42 0.36 16 35 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.06 0.61 7.89 -51.93 -0.41 0.20 16 37 H 0.08 1.30 6.00 -51.93 -0.31 0.99 16 38 H 0.08 1.35 7.39 -51.93 -0.38 0.96 16 LS Contribution 289.95 15.07 4.37 4.37 Total: -1.00 -30.87 289.95 -6.76 -37.63 By element: Atomic # 1 Polarization: 4.05 SS G_CDS: -6.43 Total: -2.38 kcal Atomic # 6 Polarization: -13.64 SS G_CDS: 0.51 Total: -13.13 kcal Atomic # 7 Polarization: -37.09 SS G_CDS: -0.14 Total: -37.23 kcal Atomic # 8 Polarization: -6.11 SS G_CDS: -0.40 Total: -6.51 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.67 Total: 17.26 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -30.87 -6.76 -37.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687526748.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.398 kcal (2) G-P(sol) polarization free energy of solvation -30.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds