Wall clock time and date at job start Mon Mar 30 2020 02:48:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46899 * 111.00109 * 2 1 4 4 C 1.52997 * 109.47518 * 63.20128 * 3 2 1 5 5 C 1.50696 * 109.47312 * 180.02562 * 4 3 2 6 6 H 1.07999 * 120.00331 * 359.97438 * 5 4 3 7 7 C 1.37882 * 120.00064 * 180.02562 * 5 4 3 8 8 N 1.31509 * 120.00080 * 179.97438 * 7 5 4 9 9 Si 1.86803 * 119.99762 * 359.97438 * 7 5 4 10 10 H 1.48497 * 109.46884 * 270.00021 * 9 7 5 11 11 H 1.48499 * 109.46893 * 150.00003 * 9 7 5 12 12 H 1.48497 * 109.47266 * 29.99858 * 9 7 5 13 13 C 1.46902 * 111.00131 * 236.04231 * 2 1 3 14 14 C 1.52999 * 109.47440 * 203.14875 * 13 2 1 15 15 C 1.53000 * 110.75085 * 55.84626 * 14 13 2 16 16 C 1.55298 * 110.84654 * 179.54174 * 14 13 2 17 17 C 1.54954 * 100.94075 * 152.32039 * 16 14 13 18 18 O 1.43641 * 105.13670 * 323.55889 * 17 16 14 19 19 C 1.43236 * 109.97228 * 24.42376 * 18 17 16 20 20 H 1.08998 * 109.46884 * 63.63617 * 1 2 3 21 21 H 1.08998 * 109.47193 * 183.64646 * 1 2 3 22 22 H 1.09005 * 109.47101 * 303.64363 * 1 2 3 23 23 H 1.09003 * 109.47163 * 303.19724 * 3 2 1 24 24 H 1.09007 * 109.46800 * 183.20285 * 3 2 1 25 25 H 1.09003 * 109.47234 * 59.99639 * 4 3 2 26 26 H 1.08996 * 109.46810 * 300.00163 * 4 3 2 27 27 H 0.96995 * 120.00206 * 179.97438 * 8 7 5 28 28 H 1.09000 * 109.46664 * 323.15207 * 13 2 1 29 29 H 1.08997 * 109.46688 * 83.14542 * 13 2 1 30 30 H 1.08996 * 109.47094 * 64.77287 * 15 14 13 31 31 H 1.09002 * 109.46829 * 184.77776 * 15 14 13 32 32 H 1.09008 * 109.47138 * 304.77242 * 15 14 13 33 33 H 1.08996 * 111.12901 * 270.24150 * 16 14 13 34 34 H 1.09002 * 111.12525 * 34.40584 * 16 14 13 35 35 H 1.09001 * 110.30688 * 204.63660 * 17 16 14 36 36 H 1.09003 * 110.38700 * 82.51635 * 17 16 14 37 37 H 1.09005 * 109.83008 * 238.77454 * 19 18 17 38 38 H 1.09002 * 109.82914 * 117.80463 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.5711 2.0807 1.2875 5 6 2.1107 3.4877 1.2872 6 1 2.6979 3.8407 0.4524 7 6 1.8555 4.3242 2.3532 8 7 2.3268 5.5519 2.3531 9 14 0.8404 3.7134 3.7975 10 1 -0.5955 3.9995 3.5494 11 1 1.2762 4.4059 5.0368 12 1 1.0335 2.2495 3.9544 13 6 1.9954 -0.7661 -1.1375 14 6 3.4165 -1.2369 -0.8215 15 6 3.4439 -2.0430 0.4786 16 6 4.0005 -2.0615 -2.0007 17 6 5.5168 -1.7968 -1.8221 18 8 5.6101 -0.4330 -1.3811 19 6 4.3880 -0.0394 -0.7461 20 1 -0.3633 0.4564 -0.9208 21 1 -0.3633 -1.0256 0.0654 22 1 -0.3633 0.5694 0.8556 23 1 1.6003 1.9123 -0.8600 24 1 3.0836 1.3428 -0.0574 25 1 1.9662 1.5398 2.1475 26 1 0.4830 2.1092 1.3449 27 1 2.1470 6.1405 3.1028 28 1 1.3579 -1.6313 -1.3190 29 1 2.0111 -0.1337 -2.0252 30 1 2.8666 -2.9586 0.3506 31 1 4.4746 -2.2951 0.7281 32 1 3.0100 -1.4494 1.2834 33 1 3.7711 -3.1214 -1.8906 34 1 3.6458 -1.6822 -2.9591 35 1 6.0374 -1.9241 -2.7713 36 1 5.9333 -2.4670 -1.0701 37 1 3.9600 0.8174 -1.2666 38 1 4.5787 0.2170 0.2960 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687526748.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:07 Heat of formation + Delta-G solvation = -65.208305 kcal Electronic energy + Delta-G solvation = -16716.623423 eV Core-core repulsion = 14172.226572 eV Total energy + Delta-G solvation = -2544.396851 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.06788 -38.47426 -35.38876 -34.42762 -32.07064 -30.72896 -28.25916 -27.43778 -27.04951 -24.28725 -23.00217 -21.53598 -20.38652 -18.96837 -17.41875 -17.05118 -16.52497 -16.06850 -15.88227 -15.62068 -15.25431 -14.88497 -14.59089 -14.24995 -13.90949 -13.66702 -13.34091 -13.17789 -12.91997 -12.66932 -12.54920 -12.32489 -11.86527 -11.81689 -11.61537 -11.59557 -11.57943 -11.33864 -11.18809 -10.75098 -10.45829 -9.20376 -8.30599 -6.34943 1.34426 1.37447 1.50339 2.35653 2.91089 3.04712 3.08035 3.50875 3.81611 3.90459 4.20244 4.25116 4.32512 4.37638 4.40223 4.57025 4.59833 4.73191 4.75528 4.83540 4.86900 4.91104 4.92427 4.98132 5.08938 5.10979 5.18413 5.22277 5.29661 5.47890 5.56109 5.62982 6.06964 6.12308 6.25458 6.31995 6.73060 7.29749 8.86361 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.033040 B = 0.007046 C = 0.006384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.264978 B = 3972.653533 C = 4385.119915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.546 5.546 3 C 0.062 3.938 4 C 0.001 3.999 5 C -0.534 4.534 6 H 0.029 0.971 7 C 0.006 3.994 8 N -0.951 5.951 9 Si 0.952 3.048 10 H -0.265 1.265 11 H -0.283 1.283 12 H -0.247 1.247 13 C 0.071 3.929 14 C -0.083 4.083 15 C -0.122 4.122 16 C -0.136 4.136 17 C 0.042 3.958 18 O -0.415 6.415 19 C 0.055 3.945 20 H 0.023 0.977 21 H 0.090 0.910 22 H 0.058 0.942 23 H 0.011 0.989 24 H 0.077 0.923 25 H 0.020 0.980 26 H 0.019 0.981 27 H 0.267 0.733 28 H 0.100 0.900 29 H 0.031 0.969 30 H 0.075 0.925 31 H 0.049 0.951 32 H 0.055 0.945 33 H 0.111 0.889 34 H 0.082 0.918 35 H 0.097 0.903 36 H 0.068 0.932 37 H 0.056 0.944 38 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.915 -19.939 -7.078 21.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.269 5.269 3 C -0.065 4.065 4 C -0.037 4.037 5 C -0.572 4.572 6 H 0.047 0.953 7 C -0.191 4.191 8 N -0.592 5.592 9 Si 0.775 3.225 10 H -0.190 1.190 11 H -0.209 1.209 12 H -0.171 1.171 13 C -0.057 4.057 14 C -0.084 4.084 15 C -0.180 4.180 16 C -0.174 4.174 17 C -0.034 4.034 18 O -0.335 6.335 19 C -0.021 4.021 20 H 0.041 0.959 21 H 0.108 0.892 22 H 0.077 0.923 23 H 0.030 0.970 24 H 0.095 0.905 25 H 0.039 0.961 26 H 0.037 0.963 27 H 0.075 0.925 28 H 0.118 0.882 29 H 0.049 0.951 30 H 0.094 0.906 31 H 0.068 0.932 32 H 0.074 0.926 33 H 0.129 0.871 34 H 0.100 0.900 35 H 0.115 0.885 36 H 0.086 0.914 37 H 0.074 0.926 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -0.583 -19.889 -6.581 20.957 hybrid contribution -0.571 1.153 -0.038 1.287 sum -1.154 -18.736 -6.619 19.904 Atomic orbital electron populations 1.22454 0.86881 1.02761 1.00386 1.61996 1.08468 1.13401 1.43069 1.22290 1.00356 0.87097 0.96741 1.19445 0.96059 0.93085 0.95115 1.21428 1.33289 0.97755 1.04770 0.95308 1.25996 0.96881 0.94672 1.01535 1.70068 1.47792 1.08146 1.33171 0.85631 0.79055 0.79882 0.77936 1.18977 1.20920 1.17056 1.22113 0.94941 0.97892 0.90787 1.22092 0.94264 0.94514 0.97536 1.21623 1.01200 0.99595 0.95533 1.23321 0.94297 1.02060 0.97691 1.23596 0.97036 0.82419 1.00304 1.88388 1.36988 1.30194 1.77948 1.23556 0.84446 0.97442 0.96674 0.95879 0.89163 0.92308 0.97028 0.90474 0.96124 0.96268 0.92452 0.88153 0.95066 0.90621 0.93176 0.92632 0.87088 0.89959 0.88451 0.91382 0.92566 0.92889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.64 9.26 127.69 1.18 1.82 16 2 N -0.55 -17.24 3.77 -922.46 -3.48 -20.71 16 3 C 0.06 2.54 4.29 86.30 0.37 2.92 16 4 C 0.00 0.03 3.90 29.85 0.12 0.15 16 5 C -0.53 -31.75 9.66 25.60 0.25 -31.50 16 6 H 0.03 1.88 7.99 -2.91 -0.02 1.86 16 7 C 0.01 0.36 5.47 84.66 0.46 0.82 16 8 N -0.95 -60.98 13.96 21.45 0.30 -60.68 16 9 Si 0.95 45.27 27.47 68.60 1.88 47.15 16 10 H -0.26 -11.97 7.11 99.48 0.71 -11.27 16 11 H -0.28 -13.19 7.11 99.48 0.71 -12.49 16 12 H -0.25 -11.03 6.54 99.48 0.65 -10.37 16 13 C 0.07 1.75 4.20 86.30 0.36 2.12 16 14 C -0.08 -2.01 0.72 -50.92 -0.04 -2.05 16 15 C -0.12 -2.80 8.29 71.98 0.60 -2.20 16 16 C -0.14 -2.42 6.12 32.05 0.20 -2.22 16 17 C 0.04 0.88 7.50 72.65 0.54 1.43 16 18 O -0.41 -13.04 11.36 -148.98 -1.69 -14.73 16 19 C 0.05 1.76 5.15 72.45 0.37 2.13 16 20 H 0.02 0.62 8.14 -2.39 -0.02 0.60 16 21 H 0.09 1.93 8.05 -2.39 -0.02 1.91 16 22 H 0.06 1.83 6.21 -2.38 -0.01 1.82 16 23 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 24 H 0.08 3.24 3.77 -2.38 -0.01 3.23 16 25 H 0.02 1.00 7.20 -2.39 -0.02 0.99 16 26 H 0.02 0.89 5.83 -2.39 -0.01 0.88 16 27 H 0.27 15.89 8.31 -92.71 -0.77 15.12 16 28 H 0.10 1.93 7.82 -2.39 -0.02 1.91 16 29 H 0.03 0.82 7.85 -2.39 -0.02 0.80 16 30 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.05 1.11 7.70 -2.39 -0.02 1.09 16 32 H 0.05 1.56 7.44 -2.38 -0.02 1.54 16 33 H 0.11 1.37 8.04 -2.39 -0.02 1.35 16 34 H 0.08 1.39 8.04 -2.39 -0.02 1.37 16 35 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.07 1.27 7.89 -2.39 -0.02 1.25 16 37 H 0.06 2.00 6.00 -2.38 -0.01 1.98 16 38 H 0.05 1.92 7.39 -2.39 -0.02 1.90 16 Total: -1.00 -69.01 289.95 2.39 -66.62 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: 0.96 Total: 8.94 kcal Atomic # 6 Polarization: -31.01 SS G_CDS: 4.42 Total: -26.59 kcal Atomic # 7 Polarization: -78.21 SS G_CDS: -3.18 Total: -81.39 kcal Atomic # 8 Polarization: -13.04 SS G_CDS: -1.69 Total: -14.73 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 1.88 Total: 47.15 kcal Total: -69.01 2.39 -66.62 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687526748.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.416 kcal (2) G-P(sol) polarization free energy of solvation -69.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds