Wall clock time and date at job start Mon Mar 30 2020 02:48:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46898 * 111.00202 * 2 1 4 4 C 1.52999 * 109.46984 * 293.95180 * 3 2 1 5 5 C 1.50701 * 109.47416 * 179.97438 * 4 3 2 6 6 H 1.08006 * 119.99682 * 0.02562 * 5 4 3 7 7 C 1.37874 * 120.00294 * 179.97438 * 5 4 3 8 8 N 1.31512 * 119.99967 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 119.99966 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47295 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.46965 * 120.00641 * 9 7 5 12 12 H 1.48499 * 109.47253 * 240.00234 * 9 7 5 13 13 C 1.46906 * 110.99869 * 123.95141 * 2 1 3 14 14 C 1.52996 * 109.47046 * 85.90497 * 13 2 1 15 15 C 1.53009 * 110.56391 * 298.35360 * 14 13 2 16 16 C 1.54506 * 110.51205 * 175.67469 * 14 13 2 17 17 C 1.54480 * 104.06064 * 241.35205 * 16 14 13 18 18 O 1.44426 * 104.80280 * 23.98013 * 17 16 14 19 19 C 1.44419 * 105.27266 * 319.48334 * 18 17 16 20 20 H 1.08998 * 109.46683 * 290.26430 * 1 2 3 21 21 H 1.08999 * 109.46845 * 50.25779 * 1 2 3 22 22 H 1.08994 * 109.47562 * 170.26192 * 1 2 3 23 23 H 1.09002 * 109.47534 * 53.95353 * 3 2 1 24 24 H 1.08998 * 109.47432 * 173.95295 * 3 2 1 25 25 H 1.09002 * 109.47126 * 300.00422 * 4 3 2 26 26 H 1.09008 * 109.47258 * 60.00289 * 4 3 2 27 27 H 0.97004 * 120.00376 * 179.97438 * 8 7 5 28 28 H 1.08995 * 109.47085 * 325.90288 * 13 2 1 29 29 H 1.08996 * 109.47073 * 205.89947 * 13 2 1 30 30 H 1.09000 * 109.46811 * 311.05280 * 15 14 13 31 31 H 1.08997 * 109.46946 * 71.05253 * 15 14 13 32 32 H 1.08996 * 109.46731 * 191.05642 * 15 14 13 33 33 H 1.08994 * 110.51207 * 359.97438 * 16 14 13 34 34 H 1.08996 * 110.51434 * 122.71208 * 16 14 13 35 35 H 1.09003 * 110.36957 * 142.80944 * 17 16 14 36 36 H 1.09001 * 110.37285 * 265.03148 * 17 16 14 37 37 H 1.09000 * 110.37772 * 281.68149 * 19 18 17 38 38 H 1.09001 * 110.37150 * 159.34525 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6316 2.0574 -1.3183 5 6 2.1711 3.4645 -1.3181 6 1 2.7192 3.8325 -0.4634 7 6 1.9660 4.2816 -2.4095 8 7 1.2990 3.8333 -3.4505 9 14 2.6354 6.0255 -2.4095 10 1 3.3435 6.2840 -1.1301 11 1 3.5822 6.1922 -3.5413 12 1 1.5131 6.9866 -2.5575 13 6 1.9955 -0.7660 1.1377 14 6 2.0820 -2.2460 0.7597 15 6 0.6935 -2.7993 0.4327 16 6 2.7339 -3.0589 1.9005 17 6 4.0076 -3.6519 1.2584 18 8 4.3142 -2.7655 0.1602 19 6 3.0390 -2.4441 -0.4367 20 1 -0.3632 0.3559 0.9641 21 1 -0.3633 0.6570 -0.7902 22 1 -0.3634 -1.0128 -0.1738 23 1 1.5612 1.9274 0.8309 24 1 3.0798 1.3444 0.1083 25 1 2.0659 1.5014 -2.1492 26 1 0.5472 2.0845 -1.4266 27 1 1.1544 4.4083 -4.2183 28 1 1.3312 -0.6478 1.9937 29 1 2.9887 -0.3981 1.3949 30 1 -0.0039 -2.5205 1.2226 31 1 0.3519 -2.3859 -0.5162 32 1 0.7434 -3.8856 0.3589 33 1 2.9949 -2.4063 2.7336 34 1 2.0670 -3.8550 2.2316 35 1 4.8262 -3.6615 1.9782 36 1 3.8138 -4.6600 0.8920 37 1 2.6960 -3.2661 -1.0649 38 1 3.1134 -1.5258 -1.0192 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687526749.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:09 Heat of formation + Delta-G solvation = -49.349196 kcal Electronic energy + Delta-G solvation = -16457.012074 eV Core-core repulsion = 13913.302925 eV Total energy + Delta-G solvation = -2543.709148 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.83219 -37.02212 -33.89185 -32.65748 -29.95821 -29.09318 -27.76032 -25.51964 -25.10605 -23.04652 -21.99452 -19.82718 -19.12476 -16.40174 -16.26815 -15.70616 -15.04639 -14.77709 -14.51152 -14.46264 -14.04697 -13.12057 -12.73772 -12.69053 -12.52301 -12.09020 -12.03959 -11.65774 -11.32402 -11.19645 -11.02637 -10.85610 -10.68216 -10.46755 -10.43385 -10.24030 -9.84281 -9.57152 -9.27180 -9.08008 -8.31155 -7.70210 -5.97686 -3.99673 3.32774 3.40179 3.44330 4.13765 4.31935 4.51018 4.73209 4.91346 4.95669 5.17287 5.21638 5.38387 5.40127 5.62270 5.64707 5.70594 5.77436 5.80153 5.90700 5.92479 5.95391 6.10417 6.14088 6.25535 6.37864 6.42691 6.53394 6.57375 6.96921 7.00615 7.52744 7.60618 7.82728 7.93055 8.10822 8.46364 9.07809 9.63961 11.13791 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.041967 B = 0.005560 C = 0.005289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.030823 B = 5035.061164 C = 5292.243617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 N -0.540 5.540 3 C 0.062 3.938 4 C 0.028 3.972 5 C -0.521 4.521 6 H 0.054 0.946 7 C 0.058 3.942 8 N -0.894 5.894 9 Si 0.891 3.109 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.285 1.285 13 C 0.068 3.932 14 C -0.085 4.085 15 C -0.139 4.139 16 C -0.149 4.149 17 C 0.045 3.955 18 O -0.377 6.377 19 C 0.059 3.941 20 H 0.015 0.985 21 H 0.077 0.923 22 H 0.070 0.930 23 H 0.018 0.982 24 H 0.060 0.940 25 H 0.024 0.976 26 H 0.017 0.983 27 H 0.259 0.741 28 H 0.033 0.967 29 H 0.070 0.930 30 H 0.053 0.947 31 H 0.075 0.925 32 H 0.048 0.952 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.085 0.915 36 H 0.054 0.946 37 H 0.052 0.948 38 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.019 -14.385 9.578 17.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 N -0.263 5.263 3 C -0.064 4.064 4 C -0.010 4.010 5 C -0.559 4.559 6 H 0.072 0.928 7 C -0.143 4.143 8 N -0.533 5.533 9 Si 0.719 3.281 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.211 1.211 13 C -0.061 4.061 14 C -0.086 4.086 15 C -0.195 4.195 16 C -0.187 4.187 17 C -0.033 4.033 18 O -0.296 6.296 19 C -0.018 4.018 20 H 0.033 0.967 21 H 0.096 0.904 22 H 0.088 0.912 23 H 0.036 0.964 24 H 0.079 0.921 25 H 0.043 0.957 26 H 0.035 0.965 27 H 0.069 0.931 28 H 0.052 0.948 29 H 0.088 0.912 30 H 0.072 0.928 31 H 0.093 0.907 32 H 0.068 0.932 33 H 0.092 0.908 34 H 0.093 0.907 35 H 0.103 0.897 36 H 0.072 0.928 37 H 0.071 0.929 38 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 0.290 -14.470 8.908 16.995 hybrid contribution -0.215 1.318 0.804 1.559 sum 0.075 -13.152 9.711 16.349 Atomic orbital electron populations 1.22795 0.88203 1.02355 1.00374 1.61962 1.07515 1.15829 1.41015 1.22384 0.98458 0.85284 1.00288 1.19113 0.96836 0.94036 0.90989 1.21241 1.34982 0.97821 1.01899 0.92801 1.24984 0.95310 0.98446 0.95559 1.69980 1.40977 1.36313 1.06036 0.86551 0.78730 0.84800 0.77999 1.19793 1.20974 1.21073 1.22151 0.99903 0.92182 0.91849 1.21883 0.96082 0.95566 0.95034 1.22033 0.95414 0.99617 1.02484 1.23078 0.97273 0.99731 0.98631 1.23339 0.97021 0.93501 0.89401 1.89143 1.28652 1.65808 1.45975 1.23563 0.81905 1.01578 0.94731 0.96688 0.90431 0.91199 0.96395 0.92118 0.95722 0.96458 0.93084 0.94841 0.91179 0.92773 0.90672 0.93246 0.90826 0.90719 0.89683 0.92823 0.92947 0.86962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.18 8.93 60.07 0.54 0.71 16 2 N -0.54 -9.64 3.74 -242.92 -0.91 -10.55 16 3 C 0.06 1.34 4.83 -3.83 -0.02 1.32 16 4 C 0.03 0.72 4.92 -27.88 -0.14 0.58 16 5 C -0.52 -14.91 9.11 -34.44 -0.31 -15.23 16 6 H 0.05 1.51 7.74 -52.48 -0.41 1.10 16 7 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 8 N -0.89 -27.08 13.29 55.43 0.74 -26.34 16 9 Si 0.89 21.87 29.54 -169.99 -5.02 16.85 16 10 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 12 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 13 C 0.07 1.02 4.07 -3.82 -0.02 1.00 16 14 C -0.08 -1.08 0.84 -152.94 -0.13 -1.21 16 15 C -0.14 -1.57 6.70 37.16 0.25 -1.32 16 16 C -0.15 -1.58 6.36 -25.16 -0.16 -1.74 16 17 C 0.04 0.50 7.63 37.93 0.29 0.79 16 18 O -0.38 -5.72 11.65 -35.23 -0.41 -6.13 16 19 C 0.06 0.85 6.64 37.93 0.25 1.10 16 20 H 0.01 0.23 7.91 -51.93 -0.41 -0.18 16 21 H 0.08 1.46 6.09 -51.93 -0.32 1.14 16 22 H 0.07 0.98 4.41 -51.93 -0.23 0.75 16 23 H 0.02 0.38 8.12 -51.93 -0.42 -0.04 16 24 H 0.06 1.31 7.79 -51.93 -0.40 0.90 16 25 H 0.02 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.02 0.47 6.37 -51.92 -0.33 0.14 16 27 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 28 H 0.03 0.48 7.69 -51.93 -0.40 0.08 16 29 H 0.07 1.11 7.56 -51.93 -0.39 0.72 16 30 H 0.05 0.58 7.91 -51.93 -0.41 0.17 16 31 H 0.07 0.93 6.13 -51.93 -0.32 0.61 16 32 H 0.05 0.48 8.03 -51.93 -0.42 0.07 16 33 H 0.07 0.77 7.73 -51.93 -0.40 0.36 16 34 H 0.07 0.67 7.68 -51.93 -0.40 0.27 16 35 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.05 0.69 7.87 -51.93 -0.41 0.28 16 38 H 0.11 1.91 7.24 -51.93 -0.38 1.53 16 LS Contribution 294.01 15.07 4.43 4.43 Total: -1.00 -30.40 294.01 -7.16 -37.56 By element: Atomic # 1 Polarization: 3.03 SS G_CDS: -6.44 Total: -3.41 kcal Atomic # 6 Polarization: -12.86 SS G_CDS: 0.46 Total: -12.41 kcal Atomic # 7 Polarization: -36.72 SS G_CDS: -0.17 Total: -36.89 kcal Atomic # 8 Polarization: -5.72 SS G_CDS: -0.41 Total: -6.13 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -30.40 -7.16 -37.56 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687526749.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.786 kcal (2) G-P(sol) polarization free energy of solvation -30.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds