Wall clock time and date at job start Mon Mar 30 2020 02:48:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46898 * 111.00202 * 2 1 4 4 C 1.52999 * 109.46984 * 293.95180 * 3 2 1 5 5 C 1.50701 * 109.47416 * 179.97438 * 4 3 2 6 6 H 1.08006 * 119.99682 * 0.02562 * 5 4 3 7 7 C 1.37874 * 120.00294 * 179.97438 * 5 4 3 8 8 N 1.31512 * 119.99967 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 119.99966 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47295 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.46965 * 120.00641 * 9 7 5 12 12 H 1.48499 * 109.47253 * 240.00234 * 9 7 5 13 13 C 1.46906 * 110.99869 * 123.95141 * 2 1 3 14 14 C 1.52996 * 109.47046 * 85.90497 * 13 2 1 15 15 C 1.53009 * 110.56391 * 298.35360 * 14 13 2 16 16 C 1.54506 * 110.51205 * 175.67469 * 14 13 2 17 17 C 1.54480 * 104.06064 * 241.35205 * 16 14 13 18 18 O 1.44426 * 104.80280 * 23.98013 * 17 16 14 19 19 C 1.44419 * 105.27266 * 319.48334 * 18 17 16 20 20 H 1.08998 * 109.46683 * 290.26430 * 1 2 3 21 21 H 1.08999 * 109.46845 * 50.25779 * 1 2 3 22 22 H 1.08994 * 109.47562 * 170.26192 * 1 2 3 23 23 H 1.09002 * 109.47534 * 53.95353 * 3 2 1 24 24 H 1.08998 * 109.47432 * 173.95295 * 3 2 1 25 25 H 1.09002 * 109.47126 * 300.00422 * 4 3 2 26 26 H 1.09008 * 109.47258 * 60.00289 * 4 3 2 27 27 H 0.97004 * 120.00376 * 179.97438 * 8 7 5 28 28 H 1.08995 * 109.47085 * 325.90288 * 13 2 1 29 29 H 1.08996 * 109.47073 * 205.89947 * 13 2 1 30 30 H 1.09000 * 109.46811 * 311.05280 * 15 14 13 31 31 H 1.08997 * 109.46946 * 71.05253 * 15 14 13 32 32 H 1.08996 * 109.46731 * 191.05642 * 15 14 13 33 33 H 1.08994 * 110.51207 * 359.97438 * 16 14 13 34 34 H 1.08996 * 110.51434 * 122.71208 * 16 14 13 35 35 H 1.09003 * 110.36957 * 142.80944 * 17 16 14 36 36 H 1.09001 * 110.37285 * 265.03148 * 17 16 14 37 37 H 1.09000 * 110.37772 * 281.68149 * 19 18 17 38 38 H 1.09001 * 110.37150 * 159.34525 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6316 2.0574 -1.3183 5 6 2.1711 3.4645 -1.3181 6 1 2.7192 3.8325 -0.4634 7 6 1.9660 4.2816 -2.4095 8 7 1.2990 3.8333 -3.4505 9 14 2.6354 6.0255 -2.4095 10 1 3.3435 6.2840 -1.1301 11 1 3.5822 6.1922 -3.5413 12 1 1.5131 6.9866 -2.5575 13 6 1.9955 -0.7660 1.1377 14 6 2.0820 -2.2460 0.7597 15 6 0.6935 -2.7993 0.4327 16 6 2.7339 -3.0589 1.9005 17 6 4.0076 -3.6519 1.2584 18 8 4.3142 -2.7655 0.1602 19 6 3.0390 -2.4441 -0.4367 20 1 -0.3632 0.3559 0.9641 21 1 -0.3633 0.6570 -0.7902 22 1 -0.3634 -1.0128 -0.1738 23 1 1.5612 1.9274 0.8309 24 1 3.0798 1.3444 0.1083 25 1 2.0659 1.5014 -2.1492 26 1 0.5472 2.0845 -1.4266 27 1 1.1544 4.4083 -4.2183 28 1 1.3312 -0.6478 1.9937 29 1 2.9887 -0.3981 1.3949 30 1 -0.0039 -2.5205 1.2226 31 1 0.3519 -2.3859 -0.5162 32 1 0.7434 -3.8856 0.3589 33 1 2.9949 -2.4063 2.7336 34 1 2.0670 -3.8550 2.2316 35 1 4.8262 -3.6615 1.9782 36 1 3.8138 -4.6600 0.8920 37 1 2.6960 -3.2661 -1.0649 38 1 3.1134 -1.5258 -1.0192 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687526749.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:09 Heat of formation + Delta-G solvation = -69.319689 kcal Electronic energy + Delta-G solvation = -16457.878059 eV Core-core repulsion = 13913.302925 eV Total energy + Delta-G solvation = -2544.575134 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.90043 -38.43076 -35.51753 -34.37598 -31.55386 -30.35445 -28.95519 -26.99019 -26.61223 -24.49387 -23.23463 -21.56288 -20.18531 -18.56628 -17.34005 -16.79007 -16.52140 -16.20434 -16.05534 -15.92773 -15.29422 -14.57438 -14.26418 -14.08054 -13.74556 -13.44264 -13.27994 -13.12496 -12.91370 -12.76595 -12.46499 -12.24243 -12.19086 -11.90066 -11.72507 -11.54827 -11.35776 -11.25871 -10.98785 -10.61474 -10.53960 -9.14688 -8.20536 -6.31583 1.39293 1.40135 1.53256 2.39910 3.05779 3.12924 3.17798 3.72709 3.86275 3.91379 4.26132 4.31407 4.34259 4.39653 4.44686 4.60224 4.62010 4.76482 4.80316 4.82638 4.87518 4.94278 4.99767 5.02114 5.08181 5.14349 5.21351 5.30938 5.44964 5.47324 5.67809 5.78694 5.98294 6.11280 6.31897 6.36116 6.85659 7.37445 8.91835 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.041967 B = 0.005560 C = 0.005289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.030823 B = 5035.061164 C = 5292.243617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.548 5.548 3 C 0.080 3.920 4 C 0.037 3.963 5 C -0.545 4.545 6 H 0.057 0.943 7 C 0.002 3.998 8 N -0.931 5.931 9 Si 0.966 3.034 10 H -0.263 1.263 11 H -0.278 1.278 12 H -0.276 1.276 13 C 0.070 3.930 14 C -0.082 4.082 15 C -0.136 4.136 16 C -0.140 4.140 17 C 0.038 3.962 18 O -0.408 6.408 19 C 0.058 3.942 20 H 0.025 0.975 21 H 0.046 0.954 22 H 0.099 0.901 23 H 0.018 0.982 24 H 0.055 0.945 25 H -0.009 1.009 26 H -0.002 1.002 27 H 0.264 0.736 28 H 0.049 0.951 29 H 0.057 0.943 30 H 0.065 0.935 31 H 0.059 0.941 32 H 0.070 0.930 33 H 0.076 0.924 34 H 0.101 0.899 35 H 0.099 0.901 36 H 0.071 0.929 37 H 0.064 0.936 38 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.042 -15.201 11.240 18.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.272 5.272 3 C -0.047 4.047 4 C -0.001 4.001 5 C -0.583 4.583 6 H 0.075 0.925 7 C -0.196 4.196 8 N -0.571 5.571 9 Si 0.790 3.210 10 H -0.187 1.187 11 H -0.203 1.203 12 H -0.202 1.202 13 C -0.058 4.058 14 C -0.083 4.083 15 C -0.192 4.192 16 C -0.178 4.178 17 C -0.038 4.038 18 O -0.327 6.327 19 C -0.019 4.019 20 H 0.044 0.956 21 H 0.065 0.935 22 H 0.117 0.883 23 H 0.036 0.964 24 H 0.074 0.926 25 H 0.010 0.990 26 H 0.016 0.984 27 H 0.073 0.927 28 H 0.067 0.933 29 H 0.076 0.924 30 H 0.084 0.916 31 H 0.078 0.922 32 H 0.089 0.911 33 H 0.095 0.905 34 H 0.119 0.881 35 H 0.117 0.883 36 H 0.089 0.911 37 H 0.082 0.918 38 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 0.265 -15.304 10.589 18.612 hybrid contribution -0.200 1.503 0.279 1.541 sum 0.065 -13.802 10.868 17.567 Atomic orbital electron populations 1.22804 0.87256 1.03510 0.99777 1.61890 1.08412 1.13741 1.43123 1.21989 0.98183 0.87187 0.97377 1.18931 0.95132 0.93553 0.92441 1.21660 1.35302 0.99087 1.02299 0.92466 1.25940 0.95394 1.03219 0.94998 1.70110 1.42050 1.38193 1.06779 0.85391 0.78230 0.78938 0.78425 1.18713 1.20338 1.20177 1.22208 0.99265 0.93208 0.91134 1.21857 0.96890 0.94260 0.95281 1.21997 0.94351 1.00889 1.01999 1.23059 0.97154 1.00069 0.97555 1.23602 0.97946 0.93624 0.88667 1.89107 1.29214 1.66976 1.47425 1.23477 0.82498 1.00427 0.95460 0.95633 0.93481 0.88273 0.96380 0.92634 0.99044 0.98390 0.92738 0.93322 0.92421 0.91585 0.92204 0.91079 0.90521 0.88055 0.88281 0.91088 0.91753 0.90507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.46 8.93 127.69 1.14 1.60 16 2 N -0.55 -19.75 3.74 -922.47 -3.45 -23.20 16 3 C 0.08 3.52 4.83 86.30 0.42 3.94 16 4 C 0.04 2.02 4.92 29.85 0.15 2.16 16 5 C -0.54 -31.93 9.11 25.60 0.23 -31.70 16 6 H 0.06 3.23 7.74 -2.91 -0.02 3.21 16 7 C 0.00 0.14 5.46 84.65 0.46 0.60 16 8 N -0.93 -57.71 13.29 21.45 0.28 -57.43 16 9 Si 0.97 45.11 29.54 68.60 2.03 47.13 16 10 H -0.26 -11.75 7.11 99.48 0.71 -11.05 16 11 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 12 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 13 C 0.07 2.01 4.07 86.30 0.35 2.36 16 14 C -0.08 -1.93 0.84 -51.17 -0.04 -1.98 16 15 C -0.14 -2.67 6.70 71.99 0.48 -2.19 16 16 C -0.14 -2.53 6.36 31.61 0.20 -2.32 16 17 C 0.04 0.75 7.63 72.49 0.55 1.30 16 18 O -0.41 -12.09 11.65 -148.98 -1.74 -13.83 16 19 C 0.06 1.66 6.64 72.48 0.48 2.14 16 20 H 0.03 0.77 7.91 -2.39 -0.02 0.75 16 21 H 0.05 1.82 6.09 -2.39 -0.01 1.81 16 22 H 0.10 2.65 4.41 -2.39 -0.01 2.64 16 23 H 0.02 0.78 8.12 -2.39 -0.02 0.76 16 24 H 0.06 2.46 7.79 -2.39 -0.02 2.44 16 25 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 26 H 0.00 -0.13 6.37 -2.38 -0.02 -0.14 16 27 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 28 H 0.05 1.27 7.69 -2.39 -0.02 1.25 16 29 H 0.06 1.80 7.56 -2.39 -0.02 1.78 16 30 H 0.07 1.17 7.91 -2.39 -0.02 1.15 16 31 H 0.06 1.37 6.13 -2.39 -0.01 1.36 16 32 H 0.07 1.12 8.03 -2.39 -0.02 1.10 16 33 H 0.08 1.35 7.73 -2.39 -0.02 1.33 16 34 H 0.10 1.33 7.68 -2.39 -0.02 1.31 16 35 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.06 1.64 7.87 -2.39 -0.02 1.62 16 38 H 0.08 2.72 7.24 -2.39 -0.02 2.70 16 Total: -1.00 -66.92 294.01 2.56 -64.36 By element: Atomic # 1 Polarization: 6.04 SS G_CDS: 1.01 Total: 7.05 kcal Atomic # 6 Polarization: -28.51 SS G_CDS: 4.42 Total: -24.08 kcal Atomic # 7 Polarization: -77.47 SS G_CDS: -3.16 Total: -80.63 kcal Atomic # 8 Polarization: -12.09 SS G_CDS: -1.74 Total: -13.83 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.13 kcal Total: -66.92 2.56 -64.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687526749.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.962 kcal (2) G-P(sol) polarization free energy of solvation -66.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds